| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
| No map location | No map location | No map location |
Predicted Genes from contig_136027
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_5217 |
4 |
3743 bp |
MLOC_5217.3 |
Available |
Available |
LOC_Os11g47780.1, FRAME:+1, EVALUE:0.0, 13111.m04767 protein pollen signalling protein with adenylyl cyclase activity, putative, expressed |
| MLOC_5218 |
2 |
575 bp |
MLOC_5218.1 |
Available |
Available |
LOC_Os06g02470.1, FRAME:-2, EVALUE:4e-35, 13106.m25646 protein ATOZI1, putative, expressed |
CDS Structure of MLOC_5217
CDS Structure of MLOC_5218
Contig Sequence (9103 bp)
>contig_136027 9103 assembly3_WGSMorex_rbca.fasta
ACGATTTATGACTTATAGGTGGCATTGGTNNNTAATTTTAGTCAACTTTAAGGACAATTT
GGATGACGTACGGAAGAAGCATTATTTGCTTTATTAGTAGGTAAGATAAGATTTTTAAGG
GTATTTGACACGACATACTACATGCTAGCTCTGTCCCTACGGTCATGAGAGCAAGAAAAG
AGGATGGATTAACTAGTTTGCACGATTGCACCTTTAATTTAATAATTAATTGGCAATTCA
AAAATTCACTTGTCAATTCATTTTAATATGCAGTACGCTGACTGGCTGACGTTTATTGCT
TCCCATTCTTTTTCTTTTTCCAGTCACTTGCCAATTCATTAAATCTGGTCTAAAGCCTAA
ATTGACTGCAGGTAGTCTCAGGTGAGGCAGATGGACCTGATATCGACATGCTTAAGGATA
TTGGATTGCAAGTACTAGCAAAATGTGATGGTTTGCCTCTTGCTGTCAAGGTAATGGGAG
GACTTCTGCGTCAGAAAGGCAAGCAACGCCGTGACTGGGAGATGGTTCTGAATGATTCTT
TATGGTCAGTATCTATGCGCGAAGAACTGAACTATGTTGTATACTTAAGCTATGAAGATT
TGCCTCCTCCCGTCAAGCAGTGTTTTCTATACTACTCCCTCCTCCCTAAAGGTAGTTTGT
TTTTTGATGATGCCATTATTAGCATGTGGATTAGTGAAGGATTTATTCACGGAACCTCAG
AAGACAACTTGGAAGAATTAGGAAGAGAGTACTACATGGAGCTTATGCTGAGGAACCTTA
TAGAGCCAGGGACAGAATATATTGATGATCAAGCTTCCAATATGCATGATGTTGTTCGGT
CATTTGCTCAGTTTGTGGCTGGAGACCAGGCAGCAACAATTCAGAGTGGAGAAACTGGTA
GCGCTAGTAAACTCACTGCACAACAGTTTCTTCACTTGTCTATAGACAGAAAAAATTCGG
AATCAGATGTGTTAGACTGGAGTTCTTTACAAGCACAAAAGGCATTGAGAACACTAATAT
GTGTCGGCCTTGTAAATATAAAGCCTGGTGATTCTTTGGTTTATTTTTCAGGCCTACGGA
CTCTGATTCTACATACACATTCTGCAAATGTCGCTCTACTGGTTGAATCTTTACATGAAC
TCAAGCTCTTGAGGTATTTGTCCATACAGAATTGTGATATATCTTGTCTGCCAGAAAACA
TTGGGAAGATGAAATTCTTGCAGTACATCAACCTTTGCATTTGCGTACAACTTGTTAAAC
TTCCACATAGCATTGTAAAGTTAGGAAAGCTATGGTCTCTTGACTTGCGTGGAACTAGTA
TAAATGGTATACCTAGAGGGTTCCATGCTTTAAAAAATCTGAGGAGACTACGTGGGTTTC
CAGTCCAGGTGGATGGTGATTGGTGTAGTTTGGAAGAGTTGGGCCCTCTTTCCGAGCTCA
GGGTTCTTGGACTGATAGGCCTGCAGAATGGATCTGCTACTTTTTCTGCTGCAAAGGCAA
GGCTTAGTAAGAAGGAGTACCTTACCAACTTGTACTTACAGTGCAGTAGTATACTTTGGG
TTGATGGGCTGATTAAAGATGAAGAAGGCGTCTCTGAGCAGCAACAAATCAAAGAGGTGT
TTGATGGGTTGCGCCCTCCGCCCAGCTTAGATTTTTTTTACATGGAAGGATATTTTGGCC
GACAACTCCCAACGTGGATGGCGTCAACATTATTAGCATCCTCCCTTGGGTGCTTGAGGA
CTCTATTTATGGAAGGCCTGCCTTGCTGCACACAACTCCCAGATGGCCTGTGCCAACTCC
CCTATCTGGAGGTTCTTCAAATCCACCACGCTCCATCCATCAAGCGTGTTGGACCAGAAT
TCCTCCAGCCCTACAATCACCATGCCTTTCCGAGATTACGCACGATGTCCTTAGACGGAA
TGCTTCAGTGGGAGGAGTGGGTGTGGGAGGAGCAAGTGCAAGCCTTTCCTGTATTGGAGG
AGCTTTTCCTACAGAAGTGTAAGCTGAGGCTTGTTCCTCCTGGCCTTGCCTCCAATGCAC
GGGCTTTGAAAATGTTAGATATATCTTCGGTACAGCAAGTTAAATTACTGGAGAATTTTG
CTTCTGTTACTGAGCTTCAATTAAATCACAACCCTGACCTGGAGCGGATCACCAATCTAC
CCAATCTTGAGAAGCTTACCATCGTGAACTGCACGAAGCTGAATGTGTTAGAGGGTGTGC
CTGCACTGCAGATTCTGGTGCTAGAGGATTATGCCATGGAGGAACTTCCGGAATACATTC
GAGGTATAATGCCAAGACAATTACAGGTAGACTGTAAGCTATGGTTGCTCGCCTCAGTAG
CTGCAGGGCAATCTGGCACTGAGTGGGACAAATTCAGCCATGTCAAACATGTAAAGGCAT
ATGCAGACGATGGAAAAAATGTCAGAGGATTGTACGTGTGGTACACAAGGGATCCCTGCA
GCTTGGAGACAAACATCAACCACCCATTTGTATCTGCAGGTAATTATACAACATACGAGC
TTCGTCTTTATGTTACCCGAGCGTTCGACATTACTTCGTTTCATTTTGTGTGCTTCCGTA
TATGCTCATATCTGAATATATTTCGTACCTTTTCGTAACAGTTGAGTATGTCGTTTGTAC
ATATGCAACTTTAGTAATAGCAAGTATTAGCTGTGCATGCGGGCTGTGTAATGCCTGCCT
TCTGATTTGGCTTCTGTCCTGCATGTTGGTAAATTTCAGAGTATTTCTGCCACTTGCTTT
CCTAGGTTTCTCGGAGTTCAACAAAACCAGGGCGCTATCCTTTTTATAGTTAAAAAATCC
ATATCATGACTGTTGGAGTCTATTCAAAGTTAATGTATAGCTCTTGGCTCTTGCCTTGCA
AATCATGGACAGTTGTGTATTTTCTTGCCTTGCAGGAATATTATCCTCTATAGACGGACA
AGTATTTCAGTCTGTATTCAAGATGAAAATAAGTACCTTCCACTATGTCTGCGGCTTGGT
GTATGCTCCATCTTTAGAAGATATGAGCAGCTGCACCTTTGCCGATGGCAGGGTGCTGTC
TCTACAAGATCGAGTAGCCCTTGCTCTGTTTGTCCTGAACTCTAGTGAGCCTCTGGAGAT
CATAGGATCCTATGTTGGTGTGAACGAATCAACCATCTCACTGTTAACTGATAGCTTTGT
TGATGCTATGGTGGAGAAAGCAACAGACCACTTGCACTGGCCATACCCCTATGAAATTGA
GAAGATCAAGTCCAAGTTTCATAAGATCCATGGTCTACCAAACTGCTGCGGTGTTTTACA
TACAGTTTGCATCACACCGCAAGATCATGAGAGAGGTTACATCTTTGTACTGCAAGCCAT
CATTGATCCAGATTTGAGGTTCATCCATGTTGATTGGGAATGGTCAGTTGGCGGGACCCG
GTCTGGTATTATTTTGCATGACTCTAACCTCTTCCAGAGCTGCGAGAAGGGTGAGTGGTT
GAACGGCAACAGGCTGAAGGTGTCTTTAGATGGATCGGAAGTTGGGGAATATTTAATTGG
TGATGCAGAATACCCTCTTCTCCCCTGGCTGCTGACACCTTATAACCAGCTGGAAAATGA
GGACCACCCAAACTTTCATTATCAAGCCGAGTTCAACAGGAGACACTCTGCAGCCCGAAC
CGTCACACTGAAGGCGTTGGCAAGGCTCAAAGAAACATATAAGTGGTTGCAGCAAGGGAC
GTGGTCTCCGGAAGATCGAAATACTGCAATCAACGCGTGCTTGATGTTGCATAACATAGT
GATAGACATGGAGGAAGGTGAAGGCGTACCGTATAGTGAGGATGCGGATTACAGCGAGCA
AGTGCGTAGGTTGGCAGATGAGGACGCTGCCAGAGCGAGGGATGTACTGGCCCGGTACTG
CTTGACCAGCAGCATGTCATCGCAATCTTGAGGTAAATTAACACAAATAATGCCCCTAGC
TAGCTACATCTTAATTCATGAGGTTGTTCTGTCCACATAGTTTGTTATGTTTATTCCGTC
CTGCTGATTCCAGCCTTCTTCATTTGTAGATGCAGACAAGGAGCAGGAAGTAGCTTCAGG
CTCAAGGGGGTAACTAGTAACTAAAGTGGGACAAGGAGCGCACACACGCACGCACGCGAG
GGCAGTAGAGGAAGAAGCACATACCGCCGTCCTCGTCGCTTCACTTGGTACTGTTTTCTC
TGCCACATCTTTCAGCCTAACTTGTATGGTCGCCTGCATCCTGCTTATGCATAACAGTTC
TTCTCTTGCCGCTCGTTCATCTGATGTTGTTGCGATATGCTAATTTATTACTTCCTATGT
ACCTAAATAATTGTAGTTGGCTAGTCTAGTTTTGTCCAACTACAATTATTTAGGTACAGA
TGGAGTAGAAAAGAATTAATTAAGCTGACACACCCAATCAATCAGCAATTAAGTTAGCAG
CTATACTACATAAGGAAAAGCGAAATGTCTTTGACATGTTAAACCTTGATGTGAGCAGGA
AGCGTGCGGGTCTCCACGCCTCATCCTTGTGTGCTTGGTTACATGCATGGACCGGCCGGA
TTCAGATGGATGAGATTGTATGCAAGCCAGCAAAGCCAAAGGCTGATTCAGTTGATGCTG
GCACGACATGGATTATAGGTCCAGCGCCTGTTGTTTTATCCTGGTCATCTCTTTGGCAAA
GACAAGTCCTATGTATTACAACATGTTGTATATATCGTCGGTGATAAGCTGTTATGCATT
GGAGAAAACGACGGCGTCGTTGCATGCATGGACGCTATTATGTGGTTTGTATTGTATCTT
TCCGGTTGATAGTTGATGCAACTGCAGAACTTGCACATACAAAATGGGTGTCCTGCATGC
TTATGGTTGTGACAGGTGCATTGTTGGGCACTACTGTTCAGTTCAGGTGCTTGCTGTTAA
GCGTGTTGTCGCCACACCCTTTTATAACAGCCTAGAAGGGAATGTCGTTTTGCATGTTTA
ACCCTAATAATAAAAAAGGTCATTGGCCAGATCAGGTAAACGTCAGCGGAGTTACTTTAT
ATAAGGGCCCGGTAGTGTTTATTTGTTTGCGGGGTTACTTTATATATACTGCAACCTTTA
TAATGACATGGTGTACATGTACTCCCTCCGTCTAAAATTATTTGTCGCAAAATGGATAAA
AATAGATATATCTAAAACTAAAGTACATCTAGATATATCTATTTATCCGACAAGTATTTT
CAGGTGGAGGGAGTATATATGTAACAAGTTATATATAACATGTTTGTCTCTCAATCTTGA
ACCATCTAATCTAATAATAACTTAATAAGTCTTGCATTACTACAACCTAAATAGTTTAAT
CGCTTCCCCACGCCCGCGGCGCGGCGGCTCGGGCGGAACCCTAGCCGCAGCCGCCACCGC
CCCCTTCCCTGCTTCCTCCTCCCTCGCAGTCGCAGGAGGAAGCCGCCGACGGCGAGGCGT
TTCCTCACCCTGCAGTGCGCTCTCGAGGCAAAGGAGTTCGGCCCTTCCGCGGCCTCTCGT
GGCGTGGCGTCGCTCGGCAGCTCTCCTCCAACAGGTCTCGGCGGGGTGGCGGCCCCCTTT
TCCTCTTGCGCAAGCTCGTTCGGGTGCTCGCCGTTGGATGCGGCGGCTTCCCACTGGCCA
ATTCAGACCGGTTCTGCCCCTGGTAGGGGGCTGCCCTGGTCTTTAGTGTGGTGTGCGCCG
ACCGCATTATGGAGGTCCGCGGTTGCCGGGGCGGCGGCCCTGGATTTGGTGGTGGCGGCT
TCCGCCAGGGGTCAGTGTGTCTGGTCATTGTGGATCGTCGTGGGATCCCGTGGTCAAAAT
GAGGTAGGCCTCGACAACTTGTGGTTCGTGGGCGGCGGTGGGTGGCGGCGGGTGTTCGGC
ACAGCTCTGGAAGAAATCTTTGCTCCGGCCGTCATCGGAGCCGGCGACGGCTGTGCCTGC
AGGTGCCGTTATCTTTCTTGGAAGCGTCGTCGTGGATGTGTGCTACTCCTTCCCACGACC
TGAATTCCTGAGGGAAACCTCAGATCCCCTAGATCGGGCGATGGAGGCGTCATTGCATCT
TTTATCTCCTTGGGGGCATCGTCCTGAAGCCGGCTACGACTCGGAGACTAGTGTATTGCG
GCATCTTCGCCGTAGATGGTGGCATCTTTACTGCCATATAGTTTGCTGAGGTAGGGCGTT
GGTTACTGTTTGGCAACGATGATGGCGTTGAGAGGATCTCGGGTCATGGCCTGGACTTTG
GTAGTCGGTTCTTTCCGGCATGTCCGAGATGGTCTTCCATGGGTTGCTTGGTTGCTTTAA
TGTCGGAGTTGTGGTGGAGCGGGTCCAGGCGGTGATGAAGGCGGTGGTCGTTTGCGAAGG
GCACAGTCGGCGCAAGTTCTGTATATTTGCCTTGTGATTCTCGTCGTCAAGGTCGGAGCT
CTCGTCTGCTTGCGTGTGTGGTCATTCGGTGGCATGTGTCGTCGTGGCTTCTTTGCAACT
GTTTGCGAGTTGGCTTCGATGTTGGAGCTCGGTGATGAAGTCGTAGACACTGGTTCGAGG
CAACGGGTGATGATGATGATGCTTGTGCGGCGGACCTCTTTCTTTTTTACGGCTTTGGGT
CCCATGTTGATGGTCAGGTTGACCGGTGGTGTCCTTGTCATATGGGTTGTGTCTTGTATA
TGTTTTATCTCAGTTTTCCGTCAATTAACCGGCAATTCTCTTCTTCTTAAATAGTAAAAG
TGACAAGTCTTTTACCTCGTTTTAAAAAAAATATCTTGCCGTCCTCATTAAGGTAGTTAC
GCGATCACTTTTTTCAGGAGTTGTTGTAATTTCCGAGGCAATGTTAATACCATCACAGCA
TAAGCTTGCAGCATCAGATCAGGAAGGAACACAGCACTTGAACACACAGTGCGGAAACAA
CAACGCAGTTAGTTAATTTACTGCCTGGTGGGAAATTTCACCAAGGAACAGAGTTCAACA
AGAGACGAGAGGGCGAGCGGTAAAGCCACCCAAAGTTGCTCACGGCAGCAAAACATTAGA
GTATACCCTGACTCTCAAGTCCCTTTTATTTATTATTAGGAACTTGATAACCCTAGCTAG
AAAAGAAACTTTGGGTCCCATGGTGGGAGCAAGACGAGCCGCGCGCCGCCCATTCATGGG
TCCTTGACGATGAAGTTCTGGCGACTGATGGGGTTCATGATGACCGGCGGCCCAGCGGTG
CGAGGCCAGGCTTGGAACTTGGCGTCGGTGGCCTGAAACCACTCCTTGTCGGTGGCGGTC
TTGCAAACAGTGCCTATACATTTCCAAAAGTAAGAAGCAGCCATTAGATGGATTCTTACA
AAAGGTTAGGCACAGGCGTCCTTCATAATTATTATAAGCATGTATGTAACAGCGTCAGCA
TGGTGCTACTAGTCACCTCCAAAGATCTTCTTGTCAGAAACGATGGTGTCGCACACGTAG
GCAACGCCAAGGGATCCGACCAGCGCGCCGATTATGCACTTTGTCGCCATTGCTACTGCA
CAATGGAGATACGGGGTATATATATATATTGTCAAATATAATGCATTGCTGTAAAGAAAC
TATTCACATGCGTGTAAACTAATGGTCAGAAAGCATGGCAGGCCAGAAAACAAACAAGCA
ACCCCACTGGCGCATGTGTAGGCATCTAGTGCAAGGGTACAGATGAAGTACCGGTTGTTT
GTTGCATGCCAACAGAAAGAAATTAAGAGAGATTATGTGCTCTTTTCAACATGAATATCT
GATGCGCATCGCCCAAATTAAGCTTGTTGGCCGGGCGGAAATTAGCCAGATTTTGTGCCC
ATTTCAACATGTATCCTATACACGGCAAAAACATGTACTTCCTTCGTTCCTAAATATAAG
TCTTTTTAAAGATTTCATTATAAACTACCTACAAATGTATATAGGCATATTTTAAAGCGT
AGATTCAGTCATTTTGTTCCATATGTACTAGGTATCTAAAAAGATTTATATATTTAGAAA
CGGAGGGAGTATCATATATGACCAACTATGTATCCACGGCCAGCTAGCTTGAAAGAGATG
TGGGGAAATCGTACATGCAAAAGTGCGTGCAACGATGATCAAGATGCATGGGACATTCAG
ATCCACCGACAGGCAACAAATCGGGATCGATCCACCCGTCGATCCAACCATCCGTACGTG
TGTGTCAATAACGACCCAAATGATATGAATAATGGATTCGTTGGTACTAACATAACAAAT
CACGATCCATCAAGAAACCGCCCAAAATCAGATTCTCCTCCGACGCAACGACGTGCGATC
ATCGAGGAGACGCCACCGACCACGAGCCCAAGGGGACGGACACGCGGGTGGATCTGATCA
TCGACGCGCGCTCAAGCACCCTACGGGATCCGGCCGCCATCTCTGATCCTCGCCGACGAT
CGATCGCCGCTGTTGCCCTACCAGGCAATCAACCCACGGAGAAGAAACCGTGTTCCGGCC
TAGATGGAGAGAGAGAGAGAGAAGAGGGCGGAGATGGTGAGGGTACCTCGCGATCGATCG
CCGCCGCCGCCGCCGCCGGGGAGGGGGAGAGGGAGAGAAGAGGAGAGGAGATGCAGGCGC
GTGGGAAGAGGCAGAGAAGGCGAGCGAGCGAGTGGGCGCAGAAATTCTTCTCCATGCATA
AAGGGCCCCCACACACCCTTTGCTTGACCGCTTCTCCTCTGGGCCTCCGGGCCGGGCTGG
GCCTCCTTTCGCATTCCCCGGCAGTTAAGCACCACACACTCTCTCGTTTCCTCTGCATTT
TCAGGTACCTTCTCTTCTCTTACCCTAAAAAAAAAAAGGTAACTTCTTTTCTTCCTTGCT
GAAGAAAAAATGTGACTCCTCTCCCCAAATATTTTCGCAGGAAAGAAATTTACTTCCCAG
CCAAGGAGTTGTTTGCCCTTTGCTGACTCGGACCAGCCAACGGCGATATATATACAAGGA
GTGCTCTTTTATTTTTATCTATACTATTAAAGGGGATCTGCCGTCGTCGTGATGGTTCGA
CCTGCAGCGATCCCCCTTCCATCGCTAGAGAGGGAAGTCCCCCACCCACGTCATCCCACA
GATTTTTTTTCATCCTTCAAAAAACCAAACGGTTCAATGCAGA
