morexGenes - Barley RNA-seq Database

Contig contig_135983
Source Contig contig_135983
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_135983 (6939 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_135983

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_5187	5	2033 bp	MLOC_5187.5	Available	Available	LOC_Os04g45821.1, FRAME:+1, EVALUE:5e-80, 13104.m04596 protein expressed protein
CDS Structure of MLOC_5187

Contig Sequence (6939 bp)

>contig_135983 6939 assembly3_WGSMorex_rbca.fasta
TTAGAGAAGGAAAATGGTTATTTCAATGAACAGTAATAATTCCTTAAAGCATACTTGATA
CGAATTTGGCCGGGGCCGCGGGGGGCCCGGCCCCCGCGCCGTTCCCGAGGGCGGCGTCCC
TGGCGGTCGCGGCGCTGCTCGCGGTGGGGATCGGACTCGGCGTCCTCGTCCTCGCCGTCG
TGCGCAGCGCCGTGCTGCTCGTGCTCGCGCTGGTGCTCTCCGCGGCCGTCTCCGCGTTCC
TCCTGTGGAATGCCGCGGCCGCGGCGTCGGGCCGCGTGCTGCGGCGGTTCGTCGACGGGC
TCCCGGCCTCCAGCCTCCGCGTCGCCGCCGACGGCCAGCTCGTCAAGATTACCGGCGTAC
GTTTTATGATTGCCTATCCATTTTACCTGTTCTCAGTCGCAATTGCGATGGAAATTGATC
TAAGATTTCCAATTCCAGCAAGTGCTCCGTTCTGAAGTCTCGTGCCTGCCGAAATTGAGC
CGCCATTTAGTGGGGCAGTATATTCAGTACTGTAGCATTTTGTATGGCGTATACTAAGTG
TATCGATTTCTTATCTAAGATAAGATATGTGGAGTATAATGCGTGCGCCGTATAGCCATT
CCGCATTTTGTGGCAAACCCACTCATGTGCCGTGTAGTAAAGGTGCATCAATCTTTTGGA
TGGGTGTATGCTCATTGACCTTATCTTGAAAGTTAGTTCTCTCAGATTGGATTGCTGTGG
ATAGAAGCTTCGCTGGCTGGATATTAGTATAATCTTACAAGGGGCAAAGAGCTCCCTACT
TTATATGCCAAGCTAATGGAAGTAACTTCTATGTAAAGACTAAACACTAATGATCGTTCC
TTTTGGTTTGTCAACTTGCCGATTCATTGTTGTAGTACAAGCATTGTTTTCCTTGTGTAT
TAACTATGTGAGCAGAATGGTGGGCTAATCTCATATGTGTTGTAATGTTTGTTCTTTTAT
GCAGATGGTTTCATGCGGTGATATTTCGTTGATTTCTTCATATGAGAAGGTGGAGAACTG
TGTCTACACATCGACGCTTCTAAGAAAATGTGGTAGATGGGGTTCTGAGGTGGCAAATCC
TAAAAATAATTGTTCCAGGTGGAAATTGACACATGCTGAGGTTAGAATGCTCTGTCGCTA
TCTAATTATATTTTGCAGAGATTTATGTATACTTTTATGTATCACATAGTTACTTCATTC
TGTTCATATTGCGCCTATCTCATTGTAATTTTATTTGTTTTCTGTAATGACTAAATATTC
TGCTTAAGCTAGTCTACGCACCACAACTGTGTTACAAACATACTATCAGTTCATGCACCA
AGGGTATTCCCTATTATTTTAGTTCCTTTTCCAGAATAATTATGGTAAGCAACAAAATGT
ACCATGGGTCAACTTTTTCTTTCCTGTTCACTTGAAATATTAAATTGAAATCCTAATGCT
TGTTCTCAATTATGTGCAAATTTGAAGAGATTTTGGCTGCATAATTCAATATGTTTATCT
AATTTGTGTTAAAAGGGTTAGATGTAACAAACTGATTTTTCGTTTCTGAAGAATTTTGAT
TTCTTCGAAGTAAATTCTAGCCGCTTTCATGTGAATTCATTTTCAAATTTATTTCACTAG
TCTTCCAATTTTGTAACCTTATAGTGCTTCTGCCGTTATTGTAGATTTGTAGTACCTAGT
GAGATACTGCAGACATATGATGTTTTTCTCATTTGAACATTCTGTGGTGTTCGGCAGAGA
TTTGCTGCTGATTTCTACATAACAGATGCAAAATCCGGCAAAAGAGCCTTGGTGAAAGCT
GGATACCACACGAAAGTTGTTCCATTGATCGATGAAAATGTTTTGGTTACAACAAGCCGA
AGTACTGATCTATCTTCAACCTTGAAATGTTGGCTAGAAGAAAGAAATCTTTCTTCTGAA
GAAGCTCAGCTTATCCGTCTTGAGGAAGGGTAATCAAATTTGTCCTCAATATCCACACTT
TTTGTTTGTATCTTTGTAGATCAAGCTATTGGAAACTTACATGATTGCACAAACTTGTAG
ATATATCACGGAAGGAATGAGGTTGAGTGTGATCGGAATTTTGAGCAAGAAGAATGGAGA
TTTCATGATACTTCCTCCTCGTGAACCTATATCTACAGGTTGTGTCTTGCAGTCATTTCT
CCTTCCAGCTTATTTTGATGGAATAGTTCTGAGACTAGTAGACAAGAGTTATTTTATGCC
ACATTCTGGAATTTCATGAAATATTTTGACAACTCATGAGATGTAACAGCTAACAATTTT
AATCCAATACCATTTCCCCTGAAATCGTCTTTTGTACCGTACCACAAACTTTGCTTGAGG
ACTCACACAGCTCGTTTTAGGTAACCCTATACATTAGGATGTACATTCTTAGTCACCTAT
GACAATGTAATGTCTTCTCCTATCTGGTGACGGATCGTGTTGTCTTACATCATTTGCTAT
TTAGGTGGTTCTCGCCTCATCGGCCTGTTGCTATACTCTCATCATTTTGTTTTTTCATTC
CTTTGTAGTGTGGCCAAAACTGTAAATTTGTTTGCAGTGTGCTTTACTGTCATCATTTTG
TTTTACTTGTCCCTTGGTAATTTGGCCAATACCGTAAACTTATTTGCAGTTTGCTTCACA
GAAACCTTCATAGCCTGGAGAAAACACTTGTGGCTGTATCTTACCCGTCTTAACTAATTT
AAGTTTGAAGATATGATGCTCTGTATATCAGAATTTGCATGATGGTTTTGTTGTAGAAGA
ATTAGAATTTCATATTTTATTTTCAGATTGTTCATTTTGAGCACATAACCTGTGGAAAGA
TCATGCAGTCCCCATTCTAGGAGCAAATCATATTTTCAGGCTTTCCGAAACATTTGGTTC
TGGAAACCCGCATTGTCATAACTCATAAGTTTCATTGGATGATTGAATCTTCTTCCTTCT
TTGGCTGTTGCCTTTTGAGGAATTTTAAAGAAGGCATCCTGGTGCAGTCGAGGGCGTAGA
ACTTCTGTGCGGGTACGACAGGAACTTAAAAGACCTTCCGTGCAGATATATTTTGAGGAA
TGTTTTAACGGATTTTTTTTTTGCGGATGCTGTTGTCATTCTGCGTAGCTTTTAAGCGCA
GTCAATGACTTTAGTAAATCAAAACAAGTCTCCTTTATGACACTTAAATTCTAACTGAAC
GGAACCAACCACAATTCGACAAGCATCAACCAAAATTTAAAAGCTACTCCATCCGTTTCA
AAATACTTGTTGTTTTAGTTCAAACTTAAACTAAAACCACGACAAGTATTTTGGAGTGGA
GGGAGTACAATTTAACAACCATAAATTCTGTGGATCACAGATGTTTAACAACCTTAAATT
CTGTGGATCACAGATGAGGACTGTTACAGTGTACTGTAGTACTGGAGAAGGATGGTACTA
TGCTACTGGCTGTTTGCGGCAGTAATGGGCCTTCCTCCGGAACTGATATGGAAGTACAGT
AATAGCGCAGACCGGCAGTGTTGCAGCTACAATTTGGGGGCAGAATTGACAAATTTGACC
CACGAGCCAGAGTATTTCATAAATTGAACTACGTTTGAAAAAAATTCATCCAACTGACCT
TTTTGTGTGACGCCCGACAGTCAGGCGCCACACTACACTGTGTGACGCCTTTGTCTTAGG
CGTCATACGGTATAGTGTGGCGTCTATGCCTTAGGCGCCACATTAGGTCTTAGGCGTCAC
ACAGTGTAATGTGACGCCTAAGACAAAGACATCACACAAAAGGGTGAATTTTTTCAAACG
TAGTTCAATTTGTAAATTAGTTTCGCTTTTGGGTCAAAATTTTTCACTTTGCCCAATTTG
GGCCTGCTCAGAGAATTGTAGCCGAGTTGTCTTATCTACCCGATCGCCATAATGACCGCG
TCATCTGATTTTGGTCACAAAATGCAATCTGTGCTAGAGTCGTCATAAATCTCGTCTGCC
TTTTGGATTGGAGCACATTCCATATGGCAGTTAGGTGTGGCGCGAAGAAAACTTTATGAC
TCGGAATGATATATCAAGAGGATACAAACATGATGAGTACGCATCCGACCCGATGCATAG
TTAAGGCGTACATAGTTACCACCAACACACACAGAAACACGGGAGTAACTAAGGATGACA
ATTTGGCCCGAATGGGTAGGTACGTGCACATTTTTGTGTCCATGGGCTATATGTCCAAAC
CATACCCGAGGGTGGGCATGTATGCGATTTTTCGCTCATGGATGTGCCCAAACCCTAACC
GGTTATCTTACTAGTAGGGAGTAAATTACAAATACCATCACAATTGTGGACCGTAAATAA
AAAACCACCATCATCTGCTTTTTTTTAAAAAACATCACCATTGTACTAACAGTTTGCGGA
AAACACTAATGGGATGACTAGCACGTAAATTGAAAATCTGACAGGTCAATCCGGTTGTCA
GGTGTCACGTGGTTGATGGAAAACTTCAACCGTCACACCCGTTTGTTTAGGCTTCTTCTA
CCCGTCATTGCCGCCAGACGAGGTCAACGCGTGTGCCACCCATGTAACCGAGGCGACGGG
TCACTTCCGTTGTCGTGGACACGAGGAGCAGCCCCCTCTGGCTCACAACGACGAGGAACA
CATCCCCTCTCGCAATAAAATCGTTAGCATCGACAACAAGTGGAGCGGCAACGGGTGGCC
GCCACATACTCTGCCTCGCGTGAGCTGATCGCCACGACCTTCTGTTTTTTAGATGACCAG
GAGATGGGGTTTTCATCGAGGAAGAATACATTCCCACATGTGATCTTGCGATCTCTCACA
TCACCCGCATGATCACTGTCACTGTAGCCCAGCAAGGCGCCACTTCCACCACACACATAT
CGATATCCATAGTTCAGTGTACCCTTGACATACCTGAGGATGTGTTTGACCGCCGTCTGA
TGTGTGGTGGTGGGTTTCTCCAAGAATCTACCGACGATGCCTACAACATGTGTGATATCT
GACCTTGTGTGAACAAAATACCTCAAACTTCCAATTATGTTGCGGTAAAGAGAGGGATCA
ACAACCTTGGCGTCGTCTTCCTTCTTCATCTTTAGCCTGCATTCCATAGGCGTGCGACAG
GAATTGCAGTCGCTCATTCTAGCTAGCTCTAGGATCTTCTCTGCATAGCCACGCTAACAC
AGGGTTATCACCCCCTCGGATTGGGTCACCTCAATTCCAGATTGTAGCTTAACGAACCAA
GATCTGTCATCTTGAACAATTTATGCATCTGGTCCTTGAACTCCAGAATGTGGGCTCGAT
CAGTGCCTTTGATGATAAGATCTTCGACATAGATACCCACGAGAAGATAGAAATCCGTGT
CGCCCTTTCGGTACACTGCATGCTTGAACGGGCTTTTGTTGAATCCGAAGGAAGTGAGGG
TTTCATCCATCTTGGCGTACCAGGCCGTCAGGCTCACGAGAAGATAGAAATCCGTGTCGC
CCTTTCGGTACACTGCATGCTTGAACGAGCTTTTGTTGAATCCGAGGGAAGTGAGGGTTT
CATCCATCTTGGCGTACCAGGCCGTCGGAGCCTGACGGAGACTGTAAAGGGCCTTCTTTA
GTTTCATCACCTTATCTTCCTTGCCACTCACTGTATATCCAGGTGGCTATGCCACGTACA
CCTCCTTAACGAGCTCTCCATTGACATCCATATGGTGTACTTCCCAGTTCGAGTGTGCGG
CGAGAGCGAGGAACATGTGCGTCGCCTCCATGCACGCCACAGGCGCAGAGATTTCTTCCA
AGTCCACACCCTCTTTGTGCGCATATCCCTTTGCGACCAAACGAGCCTTGTGCTTGAGAA
TCCTGCCGTTGGGGTCACGCTTAACCTTGTAAACCCACTTGAGACCAATTGCCCTCTGTC
CTCGAGGAAGAGAGGTCGGTTCCCAGGTGAGGTTCTCCGTGATTGAGTCCATCTCAACAT
CCATTGCGCCTTTCCATGCGGTGTCCTCGAGCTCATGAACAATGTTGGATGGCTCCTCGA
CGCTCAGCAAGCAACGCTCCATCGCCTCGCACACGGCCTCCCTCTGGGTCTTGTCGATAC
ATAGGAGAGACGGCCGCAGTGGATGGGTCCAGTGTCGACGTCGCGCCCGTCGTCGAGCAT
CAGAGGCATGACCCAGTGCACCTGACGTGCGTCGGCTGGTGTAGCTGGCTTGGACTACAT
TGTGCCATGGACGCTCCCCCGAGGCGTGGCCATGCCAGGGGACAAGTTTACCAATGCAGG
TGTGGTGGGTTTCGCTGGCGTGCGCGGCGTGCTGGTGAGGGAGGGCGTGCCATGGTCAAT
CTCGAGGACACCCTGTTGTGTGGTATAAACCACAGTGAACATGGACGGCATGGTGTGGGC
TTCTCCCGCGCTGGGGGCTCACCATGACCACGACCTGCTCTTGGACACCATGTCCCGCAT
CACGTGGACTTTCTTCATTGCAGGATCATACACGCGGTAGGCTTTGGAGCCCTCTTCATA
GCCGACGAAAACCATAAGCGTCGAGTGGTAGCTGAGCTTGGTGATGCTGGGGGCCGATGC
GCTTTACATGAACCGTGCATCCGAACGTGCACAAGTGATGCACGCTGGGATTAGGGCCAT
GACATGCCTCGTAGGCTGTGACACCCTCCAGACTCCGGGTGGGAGCGAGATTGAGCACGT
ACACCGCAATCGTCACCGCCTTGACCCAGAAGAACGCCGACATCTCCATGCTCTTCACCA
GGCACCTCGCCATCTCCACCACTGCTTGATTGCGGTGCTCGACCACCCCATTTGCTGCGG
CGAGTACGGGGCGGTCGTATAGTATTGGACATATGCCCTAGAGGCAANNNNNNNNNNNNN
NTTATTATATTTCCTAGTTCATTATAATCGTTCATTATCCATGGTATAATTGTATTGATT
GGAAACTTAGATACATGTGTGGATACATAGATCGTATAA