morexGenes - Barley RNA-seq Database

Contig contig_135977
Source Contig contig_135977
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_135977 (10067 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_135977

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_5182	4	959 bp	AK375219	Available	Available	None
MLOC_5181	2	4434 bp	MLOC_5181.1	Available	Available	LOC_Os06g09570.1, FRAME:+1, EVALUE:0.0, 13106.m01033 protein nucleolar GTP-binding protein 1, putative, expressed
CDS Structure of MLOC_5182

CDS Structure of MLOC_5181

Contig Sequence (10067 bp)

>contig_135977 10067 assembly3_WGSMorex_rbca.fasta
ATATTTAGGTACGGAGGGAGTAACATTTAATCGAAACAATCAACAAATTTCTTTTAGGAA
GTAATATACAAAGCTACAATGGCGTTTATACATCTACAGCCTATAACATAATTAGCTATT
TTACCTGTTAGTTCTCTTTGATTTCCGTTCATCGCGAATAGCCTAATGTAAATGTCCTGA
ACCTTAATACCTTATAGGTGCATATATAGGTGCTGGAAGGCTTTTTTGACAGTGGTGCGC
AATACATAAGTAGATATTAAGATGTTTAATACGCTTGTTTGCATGACACGCAGACACTAA
ACTTGAGGGGTTCATATAACATAGATAAACAAGAAATAATCCTTTAGGAGATACCCACTT
ACGTTTCCGTGAGCCCAAATGCAAGGTCAAGCATATCGTTTTCTTCATCTGTTGGATCCT
CCAGCTTGTTGTAGTCCTTTACATCCTGGATAAAATTCGAATTGCCGGCCAGCAGAATTT
CAGCTTCTTTAACAGAAAAAAAAACAGCATGGGTTATATCTAGAACATACCATAACTATG
ACATGACAAGTGGAACATGCGAGCGACCCTTCACATGCTCCTGCAGTAACGAAAACACCA
GGCGAGGTTATTACCTACAACTGGAATCAATTGACAAGATCTTAAAAAGTGAAAGATAGC
AAGCCAGTGCATGTGATGGGGTGTGAGGTGAATAAACACAGGTAGTTTAAAAACCTTCAA
GTTCTATGTCATTTTCGTGAGCAGCTTCTAACATGGACATTCCGACAGGAACACTTATCG
TCTTCTCAGTGCCATCCTTGTTGACAAATGTTACAGAGATTCTGTACAGGGCAGAGAAAA
ATGCTCTCGTCAGAAGACCAGTTCTTTACCCCAAATCAAACAATTGCTTAAAGCTGAATA
CTAACATTCAGTAAAACCGATCAAGCTATTGTTCAAGGCCGCTATTTCCTCAAGATGTGG
AAGGAGTAGCCCATCAAAAGGTGATAAATGTTAACCAAGAAAAATAACATTAGGAAATGG
TCTGCACTAATATGCTGCTTACTCCAAAGATACAAAAAATGGCTAGGTGTTTAAATTTCA
TGCTGCATAATTTTTTTTGGAAGAAGACAAACACACTCACTTCTCCTTGTCCTCACTGCC
TTCATCATGATGACTACTTGTTGTTGCAGTGGAGAAGAGGATGCTTTTCTGAAAAATAAA
GACCAGTGCAAATGATAAATCATCACTTCTGCACATACAAACAGATTTCAACAGAAGGCA
GTATTTTTTTTCTGAACATGTAGAAGGCAGTGTTTGCTTGCACATGTAAGGGTGTAGGTG
GCAAAATGATACACAGGTAGAGAAAAGATAATCTTTACTTTTTTTGAAAAAACTTCAAAA
TGAATCTGAAACACGGAGAAGTAATGTGTGCATCATGTATAGAAGAAAAACAATTCTATT
GCTGCTTTGGTTATATTCTCGGTCACAGCAGGAACCCAAGGCGATAGGGCACGACCATGT
TCTACATTAGCAATCACAACGATTATAACAGTACAAAAGGACTAACCGCTGGGGTTAAAT
GCCGGCTGACTTGACCTCGGTAGTAATTGTTGCTATTGGTTGACAAGGTTCCTGCTGCAA
GAAGTCAGAATGCAGAACCAAATAAACACCCTCACTAAACTAGGCATGCGTAAACCCAGA
AAGTTTTTCAAAATAAGCAATCAAGAAACATGATGTGACAGTTTTGGTGGGCTGAAAACC
TCACTAAACCAAAAGTTCAAGGAGATCTTGGATTCAGAGGCTCAATGCTTTTTAACAAGG
CTTTGCTCGCTAGACAAGCCTGGCGTCTTCTCATTTTTCCAAACAGTGTATGTGCAAGAC
TCCTCAAAGCCATATACTACCCAAGAGGGAACCTCATTGATACAGTTTTCAGAAATAATG
CATCACCTGGCTTGACGAGAATTGAACATGGCCCCGACCTTCTTAAAAAGGGAATTATAT
GGAGGATTAGGGATGGTAGTAAAGTTTGTATTTGAAGAGACAATTGGCTGCCAAGAAATC
GTAACCTAAAGATCAGTTCACAAAGGGGAAGTTCAAGATTATCCCGAGTCAAACAACTGT
TGATCCCAGGAAGAAAAGAGAGGAACACTCAACTGATTGCAAGAACTTTTCTCCCACACG
ATGCTGATCAAATCCTGAATATTAGTCTCTCTAAGTACTCCCTCCGTTTCTAAATATAAG
ACCTTTTAGAAATTTCAATACGGACTACATATGGATGTTATGATGTACATAGACGCATTT
TAGAGCGTAGATTCATTCATTTTGGTCCGTATGTAGTTGGTATTGGAATCTCTATAAGGT
CTTATATTTAGGAACGGAGGGAGTATAATTTTGAAGATTTCATAGCCTGGAACTGGCTTG
TAACCTGAATGTTGAGAGTCCTGTGCAGGAGGGTGCAAGTAGACTTATTTGGCGTAATAT
TTGGTCTGCCCCTGTGCCTAATAAAGTTCGTGTTTTCTCCTGCGCGTAGCTGCTGATATC
TTGGCTACTAAGAGAAACAAATGGAAACATACCTGGAAGTTGATTGTACATGCTCTATAT
GTGGTGTTACAGAAGAAGATAGTTTTCATGCAGTTAGGAACTGTACAAAGGCAAGACTCT
TCGTATGGAAGTTAGGAAGGTGTGGGCTATTCCTGAAGAATCTCAGTTTGCTTATAGAGG
GAAAGATTGGCTGCTGATCATGATCGCAAACCTGAGTAAGGAGACTAGGGGGCTGGTCCT
TCTTTTGCGGAGAGTGTGGCACCTAAGAAACGGTGTAATCCACAATAAAGGAGAAGCTCT
CATAAAAGATCCAGTTATTTTTCTCCAAAATATGCAGCTAGTCTCACTATGTGCAACCTA
AAGCTGGGTGACTACAAAGGCAAACAGCCGATGTTTGAGCCTGGAATTAGTAAACTGACA
CCGGCAGAGGACGTGTGCAGCCGAAATGAACCCGGTGGGATGCTGTGTTTGTTGGCGCCA
TTGACCAGCTGTACTAAATTAATGTAGACGGGTTGTTCTCTGCAGCGATAGGCGAAGCTA
GTATTGGTGTTGCGGCTAGAAGGTCTGGCTGTTCTGTTCTCTTTTGTGCAGCTCGTTCTG
TTAATTGCTCGGACGCAGAAGATCAGAGCTGTTAGCTAGCAAAGAAGGAATGTACTTGCT
AATACTTGGTGCCAGGCCCCCTTTTCCATCGAAACTGATTGTGCCTATGTGATAGTACAA
GTTATGAATGCTAAAGGGAGCGACATGTCCAGCAAATGAGGGCTTATCAACGAAATAAAA
AGTCTTCAGAGTCAAGTTGCAGATATCCAGTTTGTACAAGTGAAGAGAGAGTTTAATAAA
GTTGCCCACGAATTAGCGTCGAACGCTAGAATTAGTGGTTTGGTATGGTTCTGAAGAGCT
TAATTCTACTCCTGCCCAATGTCGGGCGTTGGTTTCTGAAGATTATAAGAACCTTATGCC
ATTATAATGAAATAAAGCTCCCTCTTCGGTGCCAAAGAAAATAAAAACATGACTCCCAAC
TCAAAAATCGGCTAACATGAACGATGAATATCATCTCATTACAATGGGTACTGGGTAGCC
ACAAAATGCGAAGCATTTGGTCCGAGCACAAGGTGCTTCACGTATGCATCGCATTTATAC
AAATTCCATGTTCTTCGGGCATTCATTAGGTCCAAGCACAAGCATTTTTTCCTAATTCCT
GATAGCGCGGACAGTGTAGCAGGAAGAAGGGCGGAGAGGCACTAACCAGCTCTGGTCTCG
CGCAGGAGCCGCGCCCCGAGCTGGGAGATCCTGGAGAGCATGGCAGCAGCGTCGCCTACT
GCCTCCGAACCCTAGAAGAACAATTCAAGAAACCGCGAATCAGCACCCGCAGCCGCAAGA
ATCACCACGCAGAAGCAAGATAGATAGGCAACCAGCGGTAGGGACGGATCAAGGGACAAT
CAGGAGCAGTGGAGGAGGCGAACCTCGCGGAAGCGGTGGGAGGCAGCCGCCGGTCACCTT
CCACGGCGGCGGGAAGGGGGGAGGTAGGCGGCGGGTGTGGTGGAGGCTGGCTGGCTGAGC
CGTGGTGGGGTCTCGAACCACCGCCGCCGCCTCCAGTACCGTGGGCCGGGGGAAAGCGGG
CTGGAGAGTGACCGTTAGATGGGCCGAGAGGAAAGCCCGTTAGCGAGGACATAAGAGCCC
GGACGAAACCCACCCCTAAACCCTCCTCTTTCCCCCTCCCCACCCCCGTCCGCCGCCGGA
CGCCCGCCCGCCGACTCCACCGAGGCGAAGCTCCGTCCCTCCGCCTCCTCCGCCGCCTGG
CGACGTAAGTAGCCCCTTCTTTCCGCTCTCTGCGTGCCGACCGTCTCGCGTAGTCGTGTG
CCCGTGATGATGATCCGCGCGGATGGCTGCGGTAGTAGACTTGTGCCTGTAGATTCGTGG
CTTGGTTCAACCTGTCCGTGCTCATCCCTGGTTGAACCTCTCAAAGAGTTCGTGAATAAA
GCAGTTGCGTCATCTGTTTTGCGCTGTGACTCGTGTTTGACCGAAGGATTTGTAACAAGC
GGCTCAATAAGGTTGTCTGATTTGTTGCAGATGATAAGGGGTGTTGATTTGTAGGTTTCT
AGTTGATGAGAAGTTGCCGACTAGTTAGCTGCTGCGGACGTTTTTTATGCTTCTTGTCGA
TTAAATGTTGCCGGCTAGTTTAGCTGCCGCAGATTTATACGCCTGGCGTGGTATTTTATC
AGAAGTTTGGAACTATTTCTGCTGTCGGCTTACTTTTATTTGCGCTAATTTTGTAGAATC
TATCAAGCATTTGATGCTATGAGAATGAAAGCATGCAGGTGTTGTTGTTGCTCTTCCCTC
CTTTGGGAGGCTGTTGCTGCCTTGCTGGTGCTTAGATATATTAGGTTTTCCTTCCATGTA
AGAATGGTGCCAGGGTTTCAGGGCCTGGATTAGTCTTTTGGTGTGATGCAACCGACTATA
CTTGTGTTTAAACTATTTTTGACTGCCAACAAAGAGACTGTGCTTTGACATGCTGGTATC
TAGGTATATATTGTAGATGTTTTTGTCCTTTCATATAAGAACGGTGTGCGTGTTTAAGGT
CCAGAGTTAGACTACGGTTTCAGTTTGTGATGCCAACTACTTTTGCTTTTTGTCTTATGT
TAGGTTTTCCTTCCATCAACAAAGAAACTGGGGTTAGCCTCAACAAAGAAACTGCAGTTA
GCTTTTTTGTCTTATGTTTTAAAATCAAAGTTTTCCTTGTGTGTGACATGGATGCACCGA
TAATGCTGGGGATGAATCTAGGGTCTTCATATGATTACAGATTGATGTTTTCTAGTGATT
GCTAGATTTCTTCCTGGCTATTGGAAATTCTGCTTGCTAGCATTTATGTTGAACCTTTTT
TCTGCATTAGTTTCTTCACTGGTTTATCTGCATTGGATTGACATGACATTTGTTTGTATT
ACAGGAATAAGTAGCAAATCTTTACGCCGGCAAGATGGTGCAGTATAATTTCAAGAAAAT
CACTGTTGTCCCTCCTGGGAAGGACTTCATTGACATAATCTTGTCCCGCACTCAGAGGCA
AACACCAACTGTTGTCCACAAGGGCTATGCTATCAACCGCATTCGCCAGTTCTATATGCG
CAAGGTTCGCTATACTCAGCAGAACTTCTATGAGAAGCTTTCCACCATCATCGATGAGTT
CCCCAGACTGGATGACATCCATCCTTTCTATGGCGATCTCCTCCATGTGCTCTACAACAA
GGATCACTACAAACTTGCCTTGGGTCAGATCAATACGGCTAGGAATATCATTGCAAAGAT
CTCCAAGGACTATCTGAGGCTGCTCAAGTATGGAGACACCCTGTACCGGTGCAAGTGCCT
GAAGGTTGCTGCACTAGGTCGCATGTGTACTGTTCTAAAGCGTATCAGTCCTAGTTTGGC
ATACCTGGAGCAGATCAGGCAGCACATGGCCAGGCTTCCATCAATTGACCCAAACACCCG
TACTATCTTGATTTGTGGGTATCCAAATGTTGGGAAGAGCTCTTTCATGAACAAGGTTAC
AAGGGCTGATGTGGACGTGCAGCCTTATGCTTTCACAACAAAATCCCTTTTTGTTGGCCA
TGCAGATTACAAGTATCTGCGTTACCAAGTGATTGACACTCCAGGGATCCTTGATCGGCC
TTTTGAGGATAGGAACATCATAGAAATGTGCAGTATCACCGCTCTTGCCCACTTGAGGGC
TGCTGTGCTGTTCTTCTTGGACATCTCTGGTTCTTGTGGGTACACTATTGCTCAGCAAGC
TGCACTCTTCCACAGTATAAAATCCCTGTTCATGAATAAGCCTCTGGTCATTGTGTGCAA
CAAGACTGATTTGCAGCCGCTTGATGGGCTTTCTGAAGAGGACATGAAGCTGGTAATGGA
GATGAAGTCAGAGGCTATGAAGACTATACCTCAAGGTGGAGATCCCAGTGAAGAGGGTGT
TTTGTTGACTATGAGTGCTTTAACAGATGAGGGTGTGATGGCTGTTAAAAATGCTGCATG
TGAGAGGCTTCTTGAGCAGAGGGTGGAGATCAAGATGAAGTCAAAGAAGATCAATGACTG
CTTAAATAGGTTTCATGTTGCTATGCCCAAGCCTCGTGACAACAGAGATAGGCCTACTTG
CATTCCTCAGGCTGTTGTTGAAGCTCAAGCAATTGCTGCTGCAAAGGAAAAGAAGAAACT
TGAGAGGGACCTTGAGAATGAGAATGGAGGTGCTGGTGTCTATTCTGCCAGTCTCAAAAA
GCATTACTTGTTGGCTGATGATGAATGGAAGGAAGATATTCTCCCTGAGATATTGGATGG
GCATAATGTTGCCGATTTCCTGGATCCGGATATCTTGGAAAGGTGTGAGGAACTGGAAAG
GGAGGAGGGTCTTCGTCTTGAAGAAGAAGCTGCTCAGGATGCTTTCATGATTGATGGCCA
TGACGAATTAACTGAAGAACAGCGTGAGATACTGGGTAAGATTAGGAAGAAGAAGGCAAT
GCTCATCCAAGAGCATAGGATGAAGAAGAGTACTGCAGAGAGCCGTCCTATCGTTCCAAG
GAAGCATGACAAGGATAGGAAATTCACAACCAAGAGAATGGGCAGACAACTCACATCCAT
GGGCGTTGATCCTACTGCAGCTGTGAACCGGCTTCGCAGCCAGTCAAGAGGCCGTAAGCG
TGAGAGGTCACTGAGCAGAGCTGATGGTGACAATGCTATGGACGTTGATGGCCAGCACTC
AGACAAGAAGCTGCGTACAAGGTCGAGGTCTAGGTCCAAATCACGACCAATTGAAGAGGT
CGTACCAGGTGACGGGATCCGGGATGTTGCTCAAAAGAAGAAGGCCATCAAGAAATCAAG
GGACTCTGTCAAGAACAGGAACAAGGAGGCTCGCCGTGGAGAGGCGGATCGCGTCATCCC
CACGTTGAAACCGAAGCATCTCTTCTCTGGAAAACGAGGAATTGGGAAGACCAGCAGGCG
GTAAACAAGTCAATGTGGACGTTGCTGCTTGCGATCACTCGATCAGGTGCGGAAACTGTA
CTTTCACTTGGTTATTCTTCCACCTAGTTAACAAATCTTTCTCTGCTATGATCATGAAAC
TACTCTGTTCTCCCCATATGGCTAGGGCAAATGTTAGAACCAGCACTAATCTTGTAGTCA
ATTGGTTGAGGTGTAGTTAGCTGAGAGTTCTGTTTGTGGATTATACTGTACTGTCAAATA
GGATTAGTAATGTTCTCAATAGATATGTAAAAGCATTGTCATCATAAACTTGTGATTGGT
GGTGCCAAGCACTCCAGGGTCTTATGGAGAAGTTATTAAAAGTATTGCTCGAGCTACATC
CACATGTTTATTGTAAAGTTGAAGCTCAGCCCTTTCATTTTCTCCTTATGCAGGAACTGC
AGAATCACTGCCATTTTTCGTGCTGGGCATCGGGGGAGGCTTGAGCGCCAATCTGGCAGG
AGATACTACCATCTACTGCATTTTTATCTTTGTCTGGCTTTTGCTCTCTGTTACTCGTTT
GTTAGACTACATCGTTGTCGAACTATATGCTTGTACCATCGGTCTACTCCGCACTAGTGC
GGAGCGGAGTCAGATTTTGTTTGATGGTGTTGTTAATGTATTTGAACGGGCGCTTGTTTT
CCTTTCCATGAAATGTTTTGATACTGTGAGATTGCACCTCGGTCTGGAACCTGTGAGGTT
CAGCAATTTCAACGGCAGCCACCGCAGTTGGCTTCAGGCGCCAGTGCTTGCAGTTGGTGT
TTCATTCAAGTTAATTACGAAGAAATCCTACTCTCGTTACCTTCTTGTTTCTGGGCCGTG
CCTCTCCATGCACTGTGACTTGAGGCTGTAGTCTTATGATTCTGGTTTCTTGGGTGAATT
ACTGAGGCTGTAGTCTTCTGGTATGTGATTGTTGCACATACGTCGATGCTAGGAAGAGAA
CTAGCCATGCCGCGTGCTGTGTTTTATTCATCGTTGAAGTGGTAGAATAAACTGCAGTCT
TAGACCATCTCGTTCATCGTTGAAGTGGTAGAATAAACGGCAGTCTTAGAATGTCCAACA
GGCATCTGAAAACTGCCCTGCACGTTAAAGATTTGTTTATTAAGTGTCGGAGACAGAAAA
CAAGGACATAAAAAACATCAATGCCCATGCTGCAAATTTTAATGGCGTTGGCTTCCCGTT
TTTTGCATCCATTGAACAAAAAACGTATTTATACACTGTAAATAAAATTTAAAGCGCCGC
GCGCCACCGCGCGTTTGTTGGATTTTGGGCAGAGTAGGTGTTTCTCAAGAGGAACTTACT
CATACTTGGTGAAAATATAAAAAAGTTATCTAGTCTGGTCAAAAAACTTGGTAGGATTTT
GGCCCATCTTGTTTCCTTTTGCAACTGAATGTTTTCTGTTGTGTTACTTAACAACTCTGC
ATGTTTACTGCGAGTTTTAACTAGTCACTTGGACTAAAGAGATGAGAGGAATGTAAATGG
TAAGCGCGGCGAATTGGTACGATCGATGAGCCAGGCGGAGCTTGGTACAAATTGCTGATG
GGGTGGGGGTCGGGCTAATGCAAAAACACGAGTATTTTGGGGCGTAAATTGCTAAAAAAA
ATCTCATCTAAGCCTAATGATAGCATGACGCGTTAAGATTTTTTTTATGCAACACATGCA
CAAAAATACGTCGCCTAACCCGACGGCCCCACTTGCACTGTCCAACGCGCGCAATCCGAC
GCCCCAATAATGCAGAAGCCAACGCGTTCAAAATTTGCAGCGCAGGCGCCGATGTCTTTT
TGCACGCTTTATTTTAGAGCTTCTTTTCTGTCTTCGGCACAAAAAAAAACCAAACTTCTT
AGCGCGAAGATCAATTTTTAGGCGGCTTTTTGGAGATGCTCTTATGAATGAATAAGGAAT
TGAGCCTGCTTTGCACAAACTCAAGTGTAGGCAGCTGAAGCGTATGACCTAACAGCAAGT
GAGTTGAAACTTTTTTTTTGTTGCATCGAAGATAGGGGGCTTTATTTAACCTAATAAGGT
TCGGTTACAATCTGCCTTCAAGCTGCTGATAAAAAAATCCGGGCAAGACTCAACCCAGCC
ATCAGTGCCCTCGAGCGTACAAGCACGCCTCGCACACAAATGAGCCGGAAAATTAAGCTC
TCGACCAACATGTCGCACCAAAAAAGAAGTAAAACTAAGGGTAATATCCTCCACTTCGTT
CCAGATAGGCGCCGCAATAGAACGAGAATTGCGTCGCGAATTCCATAAGTTGATAAGCTC
CAGACTATCAACTTCCATTATCACATGTGAGTAACCCCGCAGCTGTGCAAAAATCACCCC
CTCGCGGAAGGATAATAGCTCGGCAACGAAAGGATCTGAGATGCCTGGCAGGGGTTTACT
CCATGCTCCAAGGAGAGCAAGGTGAGAGCGGGCGACGCCACCAGCCCCTCCCGATAGAGC
GTCTGGGGCGATTGATCCATCGGTGTTGATTTTGATCCATCCTGCCTCTGGTGGCCGCCA
TAGCTGAGCTCCAGGCACTGGTCTTGCCCTAGGAAGCTCCAGAACCG