Map Locations of contig_135894 (8353 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_135894

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_5108 5 6486 bp AK366039 Available Available None
MLOC_5109 2 4908 bp MLOC_5109.1 Available Available LOC_Os01g52550.1, FRAME:+2, EVALUE:0.0, 13101.m05501 protein ABC transporter, ATP-binding protein, putative, expressed





CDS Structure of MLOC_5108






CDS Structure of MLOC_5109






Contig Sequence (8353 bp)

>contig_135894 8353 assembly3_WGSMorex_rbca.fasta
GATTGCAAGGTACCGTAAAAGAGCTCAAAAAACAATTCTGGAAAAGGAACAGTAGGAACT
AGACCTGGAACGTGAGAGGAAATAGCAGCAGAACTGACTGTTTTCCTTGATTCTTTTACC
TTGAATGAACAGGTTCCTCTGTTTCTGATGCACTCCACGGTCTTCGTCTCCGGGCTCGCC
TTCTCCACCTATTTCTCCTGGAGGCTGGCTCTGGTTTCCTACCCTCTGGTCCTGCTCCTC
ATTATCCCCGGTCTCATCTACGGGAAGTACCTCCTGTACCTCTCCCGCGAGTCGCGCCGC
GAGTACGCCAAGGCAAACTCCCTCGTGGAGCAAGCGCTAGGCTCCATCAAGACCGTTTAC
TCCTTCACTGCAGAGAAAGGGATCATCCAGAGGTACACGGCAATCCTCGACAAGACCATC
AACCTAGGGATCAAGCAGGGCATTGCCAAGGGACTCGCTGTCGGATTCACCGGTCTTTCT
TTCGCCATTTGGGCATTCCTCGCCTGGTATGGCAGCCGGTTGGTGATGTACCATCATGAA
AGCGGAGGGAGGATATACGCTGCAGGAATCTCCTTTGTTCTGGGTGGCCTGTATGTTCTT
CATGTCCCTCCTCACCTACTGACTTTTGATTATGTAGAATAGAACCTTAACTGTAAAAAT
TCTGAAATGTTGCAGATCCCTTGGAATGGCACTCCCGGAGCTAAAACATTTCATCGAGGC
CTCCGTTGCTGCCACGAGAATTCTCGAACGGATCAACCGTGTGCCCCAGATCAATGATGA
CGACCCAAAGGGGCTTGTTTTGGATCAAGTCCGTGGAGAGATTGAGTTTGAGTCCATCCG
CTTTGTCTACCCGTCCAGGCCTAATATGACAGTCCTCAAAGACTTCAACCTCCAGATTCC
TGCTGGCCAAACAATTGCTCTGGTTGGCTCTAGTGGCAGCGGCAAGTCTACCGCAATAGC
ACTGGTACAGCGCTTCTATGATGCCAGTGAAGGAACTGTCAAGGTCGACGGCATCGACAT
TAAGAAACTTAATCTCAAGTCGATTAGGAGCAAGATGGGACTTGTCAGCCAAGACCATGC
ACTGTTCGGCACATCCATAAAAGAGAACATCTTATTTGGCAAACCAGATGCAACCATGGA
TGAACTATATGCAGCAGCCATGACAGCGAATGCTCACAACTTCATAATGGGGCTTCCTGA
GGGATATGAGACTAAGGTATGTTCATCATATGGAAACAAAAACATTCAAGCACCTTAATT
CCCTGTCTCCCCTGCCTTATTGGTGATTTCACTGTGCTTGCAGATTGGTGAGCGTGGAGC
GTTGCTATCGGGTGGCCAGAAACAGCGCATTGCCATTGCAAGGGCGGTCCTCAAGAACCC
TGCTATACTTTTGCTTGATGAAGCCACAAGCGCACTTGACTCAGAGTCTGAGAAGCTAGT
GCAGCATGCACTTGATCAAGCATCTATGGGAAGAACAACACTGGTATATTGACTGCCTCG
GCTCTTCCTACTTTAGAATGCTAAACTTAGAGTTTCACGAATCCTTTGTCACTATAGCAC
TCATTATACCTTAATTAATACTGACCAGGTCGTAGCTCACAAGCTTTCCACCGTGAAGAA
TGCTGATCAAATTGCGGTAGTCGATGGGGGTAGAATAGCTGAAATTGGGACGCATGATGA
GCTGATCAACAAGGGTGGCCCATATTCACGACTTGTGAAATTGCAGAAGATGGTGAGCTA
CATAGATCAAGAAACTGACCAATTTAGGGCCTCCTCAGCAGCAAGGACCAGTGCCAGCCG
TCTCAGCATGTCCAGAGCAAGTCCCATGCCACTCACGCCAGGTTTCTCAAAGGAAACCGA
GTCATATGTTTCCCCACCTGCACCGTCTTTCTCCAGGCTTCTTGCAATGAATGCACCAGA
GTGGAAGCAAGCACTCATAGGCAGCATCTCTGCATTGGTATATGGTTCCTTGCAGCCCAC
CTATGCTCTAACCATCGGAGGGATGATTGCTGCATTCTTTGTTCAGGACCACAATGAGAT
GAACGCAATCATCAGCCGCTATGCATTGATCTTTTGCTCACTGTCCCTGGTATCCATTGC
TGTCAATCTACTGCAGCACTACAATTTCGCCTACATGGGGGAGCATCTAGTTAGGCGTAT
CCGAGTCCAGGTGCTTGAGAAGATCTTAACCTTTGAGGCAGCATGGTTTGATGAAGACAC
AAATTCAAGTGGCTCGCTGTGCTCTCGGCTAAGTGACGAGTCTTCTCTTGTCAAAACCCT
TGTCGCAGACAGAATCTCCCTGCTACTTCAAACAGCTTGTGGGATTGTAATTGCGGTGAC
AATGGGCCTCATAGTAGCATGGAAACTTGCCCTTGTCATGATTGCTGTACAGCCCTGCAC
GATGATATGCTACTATGCCAAGAAGATAGTTCTCTCAAATGTGTCGAGGGACTTGGCAAA
GGCTCAGTATGAAAGTACTCAGATTGCCATAGAAGCTGTTTATAACCACAGGATGGTGAC
CTCATTTGGATGCTCATCAAAGATTCTTCAGCTCTTCGAGCATACGCAAGAGGAACCACT
GAGGAAGGCAAGGAAGAAGTCATGGGTAGCAGGGATAACCACAGGGCTGTCGCCGTGCCT
CACATTCTTATCATGGGCATTGGACTTCTGGTATGGTGGGAAATTGGCACAGTCCGGGGA
GATCTCAGCAGGTGATGTCTTCAAAACCTTCTTCGTCTTGGTGAGCACAGGAAAGCTGAT
CGCTGATGCTGGCAGCATGACATCTGACCTGGCAAAGGGAGCAAATGCTGTTGCTTCAGT
TTTTGAGGTGCTAGATAGGAAATCTATCTCTCCGCAAAATTCACAGGTAACACATTTGTA
CTCCCATGAGCATTGTGTAGAATAAAATCAGCAGCCTAGCAGAAAATAATATTTTCTAGG
ATGCTAGATTGCTGTAAGAGAAAATTCTAACATGGCTATACTACAGGTGGAAAAGGACAA
TCCGAAGAGCAAGATACAAGGACGAATAGAGTTCAAAAAGGTGGATTTTTCATATCCAAC
AAGACCACAATGCCTGATCCTGCAAGATTTTAGCTTGGATGTCAAAGCAGGAACAAGTAT
TGGCCTGGTGGGGAGAAGTGGATGTGGTAAATCCACAATCATAGGTTTGATCCAGAGGTT
CTATGATGTTGATAGAGGTGCTGTAAGGATCGACGGTGTGGATGTGAGGGAGATGAATGT
TCTTTGGTATCGAGGATTCACTGCTTTAGTTAGTCAGGAGCCTGCAATGTTTTCTGGCAG
TGTCAGGGACAACATCGCCTTTGGTAAACCAGAAGCTGATGAAGAAGAGATTGTCGAAGC
TGCTAAAGCCGCAAATGCGCATGAATTCATCTCGTAAGTCTTACATATATTTCCCGCTTG
CATATATATTAAGCTATGTACTCCCACTATCGAACATATGAAATTTAAAGCTTATGGCTT
TTCAGATCTCTGAAGGACGGATATGACACTGATTGTGGAGAGCATGGCATACAGCTATCA
GGAGGACAGAAGCAAAGAATTGCAATTGCGAGGGCAATAATCCGAAATCCAGCTATACTA
CTTCTTGATGAAGCAACAAGTGCTCTCGATGCACAGTCCGAGCAAGTGGTGCAGGAAGCA
CTTGATCGGATCATGACAGGGAGGACCACAATCATAGTGGCACATCGACTAAACACAATC
AAGAATGCAGACTCAATAGCCTTCTTAGGAGAGGGCAAGGTGATTGAGCGTGGTACTTAC
CCACAGCTCATGAACAAGAAGGGGGCATTCTTTAACCTGGCAACCCTTCAGAAATAAATT
GCTTGTATAACGGAACTACCGCAATAAGTGATATCATAGCCTAATATAGTATAATATCAG
CACTCCTTGATAAGTTTTGGAGCAATTCTCGATCATCAACTTAACTTAGGAAGTGTTTAC
TAAAACAACAGAAAACAAGCAGGAGGCTTGCACTAAACTAATGTCATTCTCCTCTATGCT
GCGGATTTTAAGTTGTAGAACAATGCTAAAGGATTACAGCAGAGTGGAACATAGCCAGAA
GAAGAAATACCCAGAAGAAGAAATACCTACAACTGAACATGGCCACCTCTCCACTATTAC
TTGAAAATGATATTTAGGAGTCTTCCTTTGGATATCTCGATCTCCTTCCTCAAGTTATCC
ATCTCTATTTTGACCAATGCATCGACATCAATTAATCCAAGTTCATTGGAGGCTAGCCGT
TCTTTTACTTCGACAAGAATCTGCGCATAGCTCTTTAGAACGGTCTTAACCCTTACTCTT
TCCATTAAAGACTTCTGGACTAAACTCTCATGCTCAGCAACTTGACGCACCAATTTCTGT
ATTTCATCCTCCATCATCATGGACTGCTGCAGGCCTTTGATCTCATACTGAAGGGCCTGC
AATTTTTTCTTCTGTTCTTGCGATGTCGAGACAGCTATGTTACTATCACATGTTGCTTTC
TTGTAATCAAATTCCAAGGAAGTGCATACGCCTTCAAGTTCTTTGAGCTGCCACTTCAGC
TGATCTTGTAGCTTTGTGGAAAACTCTTCCTTTCGGCTCTCCATATTGAAATTGTGAATC
TCCTTGATTTTTTTAGCATGCTCCAGTAACGCAATCACTACCCTTTGAGCATCAACATCC
TGAAGACATGAGTCCCACTTAAGAATTTCTTTCTGCACAACAGCTTCAATTATAGCCGAA
CAATGTAGGTCTGAAGGAGAACCGCGAATGATTCCCTGAACGTGTGTGATGGTCTTCGTA
AAGTTGTTGCATTGAATATGAAGTAACACATTCTCAAAGGAATTGGTGTGTACTGAGGGC
TTCCATGTCAAACATAACTCATTTATTCTCATAGATGACACCTCGGACTTCGTCGGCGGT
GAGGAATCTATACAATCCCTCCCCATGAACGACTCAGAAGTCTCTGCAGCATTTCTATCG
ACTTGCTCTTCAAAGATTTCTCCATTATTTCCTTGATCGATTTTCTCCTCATTTTCTTGA
TGATGCTGAGGCTTCTCACTTAGTACCGACTCACATAGTGTTTTTTTGAGTCTCTTGAAG
TCTAGAGATAAGGAACCTACAAAGACACAAATTGGTTTAACTGCAGTATAAGGTGTTAGA
AGGCAGATGTAGGTTCTGATTAAGAAGAGACCAAGAATACCTATAGCATGCTGGTTATCT
CCTTTGGAAACACGATCTGGCTTCTCGTAGAGTAAATGTGCTTGCCCTGTTCTGTCCTCC
ACCCGATCTGTTGTGCTGGATAGTGAAGATTCCAACACTTCAGGTTTTTCTTTCAATGCG
CTCTCTGTGCTACCACAGGAATTCTTCAAGTGTGCCAGTCGTGGTGATCTCCGCGGTGTT
TCAGAAATTCGCTGTGGTCGCCACTTGACTATTCTCCTCTTCTGTTTGTACAGCAAATCA
CATAACTCATGGTCGTCAACTAGCTTGCTCTTCACTGCTGGCAGGTAATATTGTTGTGGC
TGAGTCGATACGTTAGGAACCACAAGACTGTTCTTCCTGCTATCATGTGTTTGAGGAGAG
CAATCATCCCCTGTAGGGAAGAAGTGTCGTAGTTCCCTCTTTATAAAATCAACTGATCAA
TCAAAAAAGATGTGTTTCAACATGCCAGATGCAAAAATGGTAGAAAATGAGATAATAAAA
GTACTTACATTGCAGAACAAGTTTCTGCTTTAGAAACTGGTTCTGAATTTGTGGTTTTCC
TCTACATGTGTTGAAAACCTCTGCAGCCGCATCTGAGTTCCACTTGTACAAACAGAGTGT
AGCACAGAATAAGTCAACTGTCACTCTGTCAACATGCAATCTTCTCATTACTTCAGCGAT
TGCTTTAGCTTTATCATCATCCATTGGCACCTTCGACAATAAGTATGTCTTTAACTCATC
CTTCAAACCATCTACTTCATGAAGATGTATGTCAGCGAAACTCTGTGAAGGGATATGCAC
ATTCCCTTGAGTACTCCCTCGGACGGGGACTATCTAAAAAGTGATATAAAATTATCAGTT
TAAGGAGACAAAAAATACTACTAAGGTGATAATCAACAATTTTAAACCTCTGCTCCTCTG
TGAACCCAATGTGAGACATGTGAAAATAAAATGACTTTAGGAGTTTCTAACTTGACATGA
AGAATCCGATCTTCTGATCCCTAAGCTTCCCGAGTTGAAGATAATTTCATGTTTTTCTTT
TACAGATGATAATGTGTTCTATATATGATTCCAAATAAGCTTGTGAACACACTTGCAAAT
AAAACTTATCTAGACTATTTGGACAACAGAGTGAATCCATACAAACAAGAGAGTAGGCAA
AATATAAAGGGGGAAATCTGGCTTGTACCAAATTTACTTAATTATTTACTCAATATTAGA
ACAGAAGGTTACTTTTGTATCAGATTGATCTGGTGTCATAACCAGTGAGTGACTCCGCCT
GGGATTATTAGTGGTCTTCATTAGCTCGTCACCAGTATATCCTCGCTTACAAGTGAGGAA
TATATCACATGGGAGTTTCCTTTCTAGACTTGTAGTAGCTTGAGCACCAATTCCTGAAGA
CCGGACTGCTTTCTCACAAGCGTTCCTACCAAACACCGAAACCATGAAATGCATTTTCTT
GTCGTATCCGAAGAGGAGGAACTCATATTCCCTCAAAGCATTTTCCACCACAAACTTGGG
CCATCCGGTGGTCAGAAATACACCGCGATCAACCTTCTCTAGCTCAACGGCCCAAGTCTT
CCCTTCTGAACGCTTAAGCGTGGCCTTAACCGGTGGTGCCGCCGGGACGTTGGAGCCCCC
GAGGCCCATCTCTGGAATGTGACCGAGGAAGTCTCGAGGTATCTCCTACATGTGGAAGCA
AACCAGCCATGAGTATACACTGCGAATAAAAAGTCAAGATGCAAATGCAGCATGCACTCT
TTGCAGGACACAATGTGAGGCTTTGCTTTCACATTGGCAAAACAGAGAGTCATAGTCGTG
TATGCGATTTAAAACCAAAAGTGCATGCTCACAGTGTGAAGCTTTATATACTTTCACATT
TGATTTGCAGAACACGCATGCAGAGGGAAATCGATGTCGCCTAGCCTATCAGACATTGGC
AGATTGCTGTGTTTCCTGGGTAAAGATGATGTTTATACATAAATAAACAAGCACGCCATC
TGAAGCTTGGAACTACCTGCCCGCACTGCATCGCATCAAGTTAAAAATGCTACTACAAAT
CGCACGCATGCGCATGCAAAGAGACCATTTCTTTTTCTAGGAAGACGCACATGCAGCCAT
GGGATTCCTTTCTTTATCTGAGACAACAGACATGGTGTTCACATGGAGCATCCGATCCAC
AAAAGAAAATGCAAGATTTAGCAGCACTGGGTGCCTCCCCTCCACTCCACCTACTACCGG
ATAGCACGTTCGCCGACGGCATACGCAATGCGGGAGGGAGGGGGGGAAGTGGAGCGGGGG
AACCCAGCCCAATCGCGTTCTTGGCTGGCCCTTTTCTTTTCCCTTTCTGATGAAGGGGGC
GGACCAAAAGGCGCGCGCATGCAATGCAACCACCACAGCAGCTGAGACAGAGGAGGAGGG
AAGGGGAGGGAGGAGCACGCACGAGGCGGCGGGCGAAGTCGCCGACGAGGACCTTGAAGA
AACGAGGCCGAGGCCTCCCCTCGTCTTCTTCCCCGGGGAATCCCGCGGATCGATCTCCGC
CCATGTTCATGGCTCGAGGAGAGGAGCGAGTGCTGGGGTGGTGGTTGGGTGGTAGTGATG
GTCGGAGTGGCCTCGGCAGAATCACCGCCGCTTCTCCGGCCCTGTCAAACGCGGAAAGCG
CTCCTTCTTTATTGCCTTCCACCTGGCGTCTAGTTCGCCACGTCATGTGTACGCCTACAC
GGCTTGTCAGGCTTGGAAACTGCATCCGTCTCACACTAGCTATCAGAGAATCGAAAATTG
CTGTTTTTAGGCCAACTCCATCCACGACTCCAAACAAACGTCCGGTTTAGTCAAATTTTG
TCCGTTTGAGATGGTAATAGATCCGTCCATGTTCGCCTCTGTTCGTTGGGTCGTGCGTGC
GTCCACCGCGCGGCCGCACCCCAAATCATGTCTGTGTTGGACTTGATTTAAAAAATAGAA
AAACTTAACTAAAAATAAATAAACGCAGTTCAAAAACTTGAAACATAATAATATTAACAT
TAAAAACAGCCTAGTTTTCACGGTCACAAAACGACCCAGTTTAACATAATTAACATGAAA
GAAAAAGAAGTCCGTCGTTGCCGTCGCCGTCGCCGTATTCACTCGCCGACGGTGTCGTCG
TCGTCGTCGTCGT