Contig Data
morexGenes
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Map Locations of contig_135833 (3521 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_135833

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_5069 3 1840 bp MLOC_5069.1 Available Available LOC_Os06g51450.1, FRAME:+2, EVALUE:2e-145, 13106.m05561 protein PHD-finger domain containing protein, expressed





CDS Structure of MLOC_5069






Contig Sequence (3521 bp)

>contig_135833 3521 assembly3_WGSMorex_rbca.fasta
CCTAGCCAGTAGGGGTTGTTTCCCAGTTAAGCCAACTTCCATTCTTCCTGGGTATTCGGG
CATGCGACCATCCCGATATTTGTTTGATGGCGGAATCACTGTCGTTACCATGTAGTTACA
TAATGTTTTAGAGTGTCAAAATGCCCCTCACTGCTGGTTGTCTATGATTATTTATTGCAG
AATGTGTTGGCTTGTCTTCTGTACCAAAAGGAGCTTGGTGTTGCCGGTATTGTGAAAGCA
GGCAACAGAGAGAATGTTGTTTGGCATACAACAACAACGCAATAGCTGCTGGGAGGGTTG
ATGGAGTTGATTCCATTGGACAAATATTTACACGGTCGATACGTATTGCTACAGCGCCGC
AGGGTGCATTTGGTGGATGTGCATTGTGCAAGTAAGTGCCCATCCATCGGCCTTGTATTG
TATGTTCAATGACCCACGCATGTGCTCTTGTTCTTTATCTTTCCAATACACCATATGTAG
AACCAATCGACCATATAAAACTATCCTCCACAAACAGAAGATATCAGGTAAAGTTGATAT
CAAATTTCCTCAATGGAGTATATGGACTGCTGGAGATATGGAGTCTTAATATCTGGATAT
CAGCTTTTGAGTTCCTTCATTAATTTGCTGTTTCCTACGAGAAAGGAAGTTACAGAATGA
TTTCATTGGATTCTAAGTCCCACTGCATCTGATCTAGGATTCAGGATACTCACTTGTTAT
TTAACTATATGCTGTTCATTTGGCTATCTGATGCCCCAACAAGCCTTTTCGTCTTTGGCT
TTTGCAGGCAACATGATTTTGGCAAAAAGAAATTTAGTGAACGAACTGTGCTGCTCTGTG
ACCAAGTAAGTTCATCAATCATATACCTGTATGGAGTTGTCATGCTGTTTTTTAGCTGCG
GCGATCTCATTTTTTGATAAACGGTAACTGTATGTTGCTATTTGTTCAGTGTGGGAGGGA
ATTTCATGTTGGATGCTTGAAAGAACACAACATGGCTGACTTGACGGTGATATCCCTAGC
CCGATATATTCTGAAAAGTTTGTATGATAAAAATGAAGAAGTATATTAATGGGTTGACTG
CTGCAGGCATTGCCTGAGGGAGCATGGTATTGTTCCACTGTATGTGTGGAGATTTGTGAG
GCACTGAAAGACCTAGTTGATCGTGGAGCAGAACCTGTTCCTGCCGTGGATGTTGATCTC
ATAAAGAAGAAGCGTGCAGAGAAAGGTTTGAATGACGATGGCGGCCTTGATGTTAGATGG
AGGGTCTTGAGGGACAAAAGTTCAGAAGATAGTAAATTGGTGCTGTCCAAGGCGGTTGCT
ATTTTCCATGTAAAGTTCCTGTGGCTTCTTCATACTGGATGACAATTAATCACCGGATCA
GTTGTCTGAGAGTTGCCTGCCCCTTTGATTGTGTATTACCAATGATACACCCACCCTAGT
TATGAGTGGTGTTGGCTATTTTTACAATGCACCTTTGGCATTTTTGCAGGAATCATTTGA
TCCTATCATTCAAGCTGCTACCGGGCGAGACCTTATTCCAGCCATGGTCTACGGGTATGA
TTGATGGACTAATGTCCTGTCTCATTTACATGTACCATACTTGAACCAAAGCTCTGGGCA
TACGATCACATGTTTATCTTTCCAGGAGGAGCGTAAGGGATCAAGATTACACAGGGATGT
ACTGTGCCGTATTGACTGTTGGGTAAACTTTTTTTTTCTTCAGCCTTTTCATTTAGCAAA
GGAAAATGGACTCCTGAACCAACTTTCGGGTTCTGTTGGTGCAGCAAGACGGTGGTTTCT
GCTGGCCTCTTCCGTGTCATGGGTTGCGTAGCCGCGGAGCTCCCCTTGGTCGCCACCACC
AGGGATAACCAAGGCTTGGTTAGTTGATAATCTACTAGTATTATTGGCGTAACCATGTCC
TACCTTTATACTAGTGTTTGCAGCGAAAAGAAGGAAAGAAAAACCAACTAATAAAGGTGT
GATCTGACTGTGCAGGGGTACTTCCAGGCGCTGTTTGCATGCATCGAGCGGCTGCTGTCG
TCGCTGAAGGTGAAGCACTTTGTGCTGCCGGCAGCGGACGAAGCGGTGTCGATCTGGACA
CAGCGGTTCGGGTTTGGCAGGATAACCCAGGATGAGGTGGGTGTCATGTCTGTCGCCTTT
TGCAATCGTCCTCTGTCATCATGTCACACGTTGATAGAAAGAAGGGAACTCGATCGCTAA
TGTGTGTGTGGTGTGTTGCAGCTGCTGGAGCACCTCAAGGGCGGGCGGCCGACGGTGTTC
CACGGCACGTCGACCCTGCACAAGCCAGTCCCGGTGGAGGTTGAGGCGGAGGCGGATGCG
CGGGGGCCCGAGGAGGAGGACGAAGCGCCGGTGCCGACGGCCTTGGAGTGAGGGGCTATT
GGCTAGCTAGCTAGCTGTTTCCTTATTTTTTGGGGTGGGGGAGGATGGATTTGTAATGGT
GTAATGTAGAGACAGGGATATTTTGTTTTTGGTTTGGTGTCTAGTAGTGTAGGATGGTGT
GTTTTGTTGAGGGGTGATGGATCCTTGCTCGTATGTTCGGTGTCTAGTAGTGTAGGATGG
TGTGTTTTGTTAGGCAGTGAAGAAGAAGAAGAAGATGATTCAGTCAGAATGAGATGGATG
GTGAGAGAGAGAGATTGATTGCTGTATTTGATTGAGGAATGATATGGATAGATGGTGATT
CAGTCAGAATGCATCTTTGCTTATCTTGCATTCTTCTTCTTTGCTTATCCTTGTAGAATG
TGTTGGTGGTGTTGGCGATGTTGTTGTACTATAGTCTATACATTCCTTGTACTAGCTTTG
TTTGCTCAACTAGAGACTACATCTTGCTTAGTGTTGGTGGTGTTGTTGGAATCCATGCAA
GGAAGTAAGGATCAATGGTCCATTTTATTCCATTCTATATCAATCAATGTATCAAATATA
AGAGTAACCCTGACGGCCAAAATAACTGATTGGGTAGGGGAGGTGCTTAGACAAATAAAT
CAGTTTTTGTGAAGCACCGGTGCATATTTAGGGTAGACGCTTAATTAAGCGCCCCTCGTA
TAGAGATAAACACCGATGCTTAAAGAAACTTAATTTATTTTACTATAAACACCTCACCTA
AGCATCTTGCATTGTACTCCTACAAGGCCTAATTTCTTTAATTTATTTTACTATAAACAC
CTCACCTAAGCATCTTGCATTGTACTCCTACAAGGCCTAATACTCGAGGCATAAATCATA
TCCCTATGATCCTTGGTTATGATCATCAATAAAGAGTGTGGTACCTTTTTGTTTCTATAA
CTTTTAATAATAATAGCAAAAAGGAAAAAATGAAGAATGACTTCGGCAAGCCGAAAAAAG
TGTTTCCCCCACGCCCGCGTTGCTCCTGGCGTCGGCTCGGGCGGAACCCTAGCTGCCGCC
GCCGTCGCCGGAGGAAGCCGGCGGGCTAAGCCCGGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNATAACTTCGTCTAGCATACCTTATCACAAGTTATACG