| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
| No map location |  |
No map location |
Predicted Genes from contig_135809
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_5048 |
1 |
477 bp |
MLOC_5048.1 |
Available |
Available |
LOC_Os11g16246.1, FRAME:+1, EVALUE:2e-14, 13111.m09138 protein retrotransposon protein, putative, unclassified |
| MLOC_5049 |
2 |
5990 bp |
MLOC_5049.1 |
Available |
Available |
LOC_Os01g47800.1, FRAME:-3, EVALUE:0.0, 13101.m04950 protein AAA-type ATPase family protein, putative, expressed |
CDS Structure of MLOC_5048
CDS Structure of MLOC_5049
Contig Sequence (10637 bp)
>contig_135809 10637 assembly3_WGSMorex_rbca.fasta
CCGATGCTGGACTGCGGCAAGGCTTGCGCGCCGAGGGCTCCCTCACCACACCCGCTGCCT
CCTATGTGACCAAGAGCCAGAGACCATCCAACACCTGTTGATCTCCTGCCCATTTGCGCG
GCAGGCATGGCATGAGACATTGTCCTGGCTGCACCTCCCAATTCCTCTGCCGGTGCATGA
CGCTTCCATCCAGGATTGGTGGAGTAGGGCGAGAGACGCCACCCCACCACCGCTACGCAA
GACACTGCGATCTGTCGCGCTGCTGGTCCCCTGGATGATATGGAAGCATAGGAACGCGTG
TGTGTTCGATCATATCCCTCCGTCGCTAGACGAGCTCTTAGATAGGATTCAAGATGAGGT
TAGGTGTTGGGCTCGGGCAGGGGACAAAGGGCTTAGGGTAGCCTTGCCCCCAACCTGGGA
CGTCCACTAGACCTGCATGTAACTGTGTTGTCATCACCTCTTCGGAGGCTGTAATTTCCC
CCCCTTTTCAATGCAAAGAAACGCAAGGCTTTTGCGTTTTCTCGAAGAAAAAAAAAGAGT
ACAACACCTTGGGTGTCAAGTTAGGAAATATTATATATGTGCAGGTCATGTAAGGTTTGA
GAATCAAACAAGAACAATAAATCTAGGATAATCAAACATCAGATTTTTATCATGGCAAAC
TGAAAGAGGATGGCAATTTTCTTTAGCGAGCATGGCAAATCCTTGCCATGTTCACATTTT
TGCTAGGAATTGCCATGCTCGCTAAAGGAAATTGCCATCCTCGTGAGAACATAATTTACC
ATAAAAAACGTTCGATTTGTCATGCTTAAAAATCTGATCCTGTAAATCTAATCTATAGTT
ATTCTCTCATCCCAATCTATGTCCACCCAGTCCCTCACAGACATGCCTTCTGGCTATCTT
CAGCACGGTAGCTATCCAGTTGTGAATCAAGATTCACAACAGAAAAATAGTCGGTAGTCT
TACTGACATATGGCCCAGGCAGGTTCACTATACGGAAAAAGGCTTTCGCCCTGCTTATAG
ATAAAGCAAACCACCATATCCATACAAACTCAAGTCAACAGCAAGTTCACTATCATACCC
ATTCATATAAAGGAGGCATGCATGCATCAGGGAGAAAAGAAAAACAGCACCCTGCTATAA
GTTATAATCGTGATTCAAAATCCAAGAATAACAATGTAGTTAGTAGTTACTGTATTCCCT
GGTTATCCCAGCCAGAGTCTATCTCTAGTACATCGGCCACTGTTAATCTATATTTGATTC
AAATCCAAATTTCAATTTGTTTTCAAAGAGACCATATGCAAACCAGTTTGGCCACTAGCT
GGATAAATCTGGCTCTTTTATGTCTCCAGACCCATATGACAAGTACTAATTCACCGTCTG
AAATCAGTCCACTAACAAAATTATGAAGTGATCCTAATAGCATAGGCAAGTTATATCCTA
CCTCCCAAGTCGCAACTACCCCTAGTCCAACAAAAAATACCCAGTGGAACTTTATTACCT
TCAAAATGGATAAGCCATGGCCAAGTATAACCCCTAAGGCCCTAACACAATCAATGTCTT
GCTGCTGTGGCAGTATTCAGAGACTTGACATGATGTGCAACCAAACCATTGCATATAAAC
ATTGCCTATGGGGTTCTAACCCATCGGTTATAGTTTGCATCAAATAGTTTATAAGAGTTT
CTTACCGACACCTAAGGTTCGCTGCTTACTCTATATTGTTAAATATAGTGTTATAGTCAT
CACCAATCAACAAAATAATGTTAGTCGTTCTTTCTGTTCCCAAACATTAACTCCGCTGGA
ATAACTAAAAACAGCAATCTTAATTTCACTCATGCCAGAATAACAGCACTCACAATTATA
CAGAATTAGCATGCTGAAAGCTATTTGCTCATTACAAAGCATACCAGCAAGTCGGTGAGT
AGTCTGAATGTAACACTCAAACCTGCTAATATTTGTGAACCTTGTTTCACCTTGATGGCT
TAATTGAGTTGTAATACATAATACAGTGAGATTTGAGAAGGCATCATCATTCATCTAGTT
CTACAGATTCCAACATCAGTAACAGCAGTCCTTGTCTACAGCAGACACACTTAATTAACA
GAAGATCAATTGCTCCACTTCTCTTCAACCAATCCATATCTCACAACGATACGCAAGAAC
GCATTCCACTGCCAATCATAACCGATAAAGGAGATTTATTTGCAGAAGGCTAGCATGAAG
TTGCATCGAGGATGAGAAGCAGAAGACTTGCTAATCTTGTGGTATGTACAGAACTGGAAG
TGGGTCAGCTCAGAGCAAAAATCCTAAACTGCAGCATCTTTAGCATTGGACAACACATTG
TATTTTTATCTGCCCACATGATCACATCAACTGGGGATCTGAACGAGCATAGAAATCGTT
CCTGGTAGAGAGCAAACACATAATCTTTTAAAGTTGCAATGAAGTGTGGTCCCTGCAGTG
AGATCTTGTGGCATCAAAACACCATCCTTAAAGAAAAAACTTAATGATTGTCCACATAGA
GAATGCCTCTCCTTATTACTGGCTTCGGCCTCTGCACTGCTTTCCAAGTGACATGTACAA
TCCATTGAAACAAAACTAACATCACCCTGACAAACACAATGCTCTGAGATGATTTCCAGA
TAATGCCTTTTGCCAATTTCTTCTTGACAACCACCTACACCTTGAGAGCTGTGCCATTTT
CTAACTGTTACTAGTAGATTCAGTGAGCAAGATGAGAGAATGTCATGCATATCATCAATG
GTTAAGCAATGCTTATTAAGCCGTACTGAATTTGAAAGAATATCACGAGACAACTTATAA
ACAGCACAGAAGCATGCGGAGCAACATTCATATAGACATGAAGATTTTGGAACTGAGAAA
TTCTTTATGCTATCTTGCATGTGACCATTAATCGAATGATCTGACTGAACATCATTAAGA
GGAAAGCCGGTATTCAACTCATTACCACTGCCATGAGATTCAGAAGACATTGTCTTCTTT
GATACTTCTACATTGCCCGTAGTAGCTGGGCATGCACTTGAATTTTCTGCCCTTTGCATA
TTATTGAAATCTTCAACAGATTCAGAGAGGCTTTCAGATCTTTGAATATCTGGCTTGCAT
TTTTCTTTACCATTGGTTACTCTGGACATTTTCCAGCCATTGTTTACTCCACCAGATCCT
CCATCGTTTATTACGGAATCTGCAGGTGCAAGAGTACCTTTGTGCGCATCAGGCGAAGCT
GAACAGACAAGATCATGTTCCACTGCATCAATCCTGGGTATAGATGTCAAATGATCATTA
CCAATGTTGCAGGCCACACTATGAATTTTAAGTTGGTCAGGACCTTGTTGGACTGGCTTG
TCATGCATCTCACTAGGACAGGAAGCATGGCCAACCAGATGGTCGTGTGACTGTTGGGCT
GAAGTGTCTTGGACCTCGGTAGAGCCGCCAACAGGACCAGAGAGTACATTGCTTTCTGTA
GCGTAACTGGTACTTTCACACTCTCTTGTGCATGACTTTCCTAGACTTGCTGGCTTTGTA
CCTAATGCTCTTGTCCTACTGTCAGGATGTAATCTGTAGATGAAAGCAAAAGGAAGAAAA
CAAAAGGTCAGTAAAAATTCGTCACAGGATCAGCAATATTGAGTACCAAAATGATCTTGC
TGGCCTAGCACACCTGACTTAAGAAAGAAACAATACTGGTAATCAATAGAAACATAAGAC
TGATTCGTCAGGCATACCTTTGGAAGGTGTATGCCCAGCTGTTCACGATGTCATCCAGAT
ATGCTACTTGAGATAGAATATGGAAGTACCGATATCGACTTTTCTTTTCCAAAATTTTAA
TTCGGATCTGCTCAACTAACAGTTCCAAGACCTTTCTCACCTCAGCACAGACTTCCATAA
CAGATGCATAAACACCTCTATATGCTAATAAACCAACAGCAACCAATCCTCTCACACAAA
GGAACTTCTCCTTACCCTTAACAACACTCTGTCCTTCAGACAATGATTTATCGGATGAGC
TACTGCCATGTAATAAACAGGAATTAAACGGCCAGCCTTTCCATGGTCCATTTATATCAG
TGCAGGGGCCTTCACGCAGTTTTGAGGTAACCCAACAGAGTTTAGAGAACTGCGGGTGCT
GCAGTATCTGGATTCCGAAGGCAATAATAGAAAGTGATTCATTGCCCTTCATAGTTCTAC
TAGAAGGATTTCTTGAGACAAGTTTCTCAGGATCTTCCTCTTTATCTTTCACATCAGACG
CTGATGGATGTGGCTGAGCATTGCATGTGGGCAGCTTTGTAGGGTATGAGGGCCGTTCTT
CAACATACAAAGAAGACTTCGCCAATATGGTGGATTCCTGATTCTCACAGGATTTAGATT
CATCTGGTGCACTAATTTCCATGGGAGCAAAGACTTCTTTCTGTTCATCACGATTGTTAT
GAGCTCTGTCATGCAATAATTGAACATGATGCTGAATTAAGTCATGTGATAACCGCAAAG
CACATGAATCGAGCACCTCGTCCCAGCTAATAGAGCTATCAACATTCACAGAGAATCTTG
GTACAGTGTGTTCTGAAGAACTAAGACATTGATCTACAACATGTGTGCTGAAGAAATGCT
TTACTCCGCATGGAAGATCTTGGAACTTCAGCTCACTAGTGGCCTGTAAGTGAATTATCA
GCTATATATACAATTTTTATATAATCAGGTCAGTTAATTACCACTAAATCTCAAGTCTAA
AGAGTAATGGGTAATCGCCAATGGTGATAACATTCACCGTGTTCAACATGAATATGAGAT
GAAAGATAAACCAGCAAGGCAGCAACAAATGAACCAACCATCTCTTTATCATTTGCACAA
ATAGACTACATAACAAATACTCCCTCTGTACCTAAATACTTGTAGTTGGGGAGAACTAGA
CATAACTGAGCACATCACTATTGTTGCTATTAAGATCCAATGGGCGAACTACTGCTATAT
AATGTTGCACAATTGAATTTGAGCAATTACTCACAGCTACGAACTACTGTACTTGCTACT
AACTTCTAGAGCGAATTTGGGGTTAGTTTGGCAATACAGTGGCTTTTAGGTTACGGTTTT
GTTTATTAATTCCAGATATCCTCGGTAATTAACTAAGAGCCATAGCAGAAATATTTCACA
ATAATTGGTAAAGAATATCTCAACTAACTATATGTTGCAGCATGGACTGATCACAACCTT
TATGTCATTTTAAGTTTGTGTTGTAAGGCCCAAAAGCATGATTTAACAAAGATAAATACA
AAATATCCTTTACTTGATAACAGTTTTAGTTGTTTTTACTTTTTAGTTTAGATTATCATA
TAAAAAAACGCAAACAAGGTGATAACATGACTAGAAATCCTCAGAGGCGTACTCATCGTG
TTAATGAACTTAAATGCAGTATTTTACCATTAACTTATGCACATTCCTTTGTGACATATT
ATGGAGGACAGTACGAATATGCATACATATATCCAGAAAATCTCAAGCAAAAAGGAAGTG
AAAAGACATATGGCATGAAGAGTGGAGATGAAGCTTACCAGAACACTTATGGATACAGAT
GCTGACAATGAACTCATCTGATCAACCAAAGTATTCCAAACTTCTGAACATTTTGGCATG
CTTTCGACTGGCGAGGAGGCCAACTTGCTTGTACCCATGTTGCGCCCATGATCTTCTGTT
TCCTGTTCATGGACCGTGTTGACTGCCCACAAATCAACTCTAGGCATGTAGATTATGCAC
CTTTCAAGGTGTAGACCTTTCACTGGTCAGGGAAAAGCAAAAATAAACTATGGTTACTCA
CTTATATCCACTTGGCAACAAATGGAAGACACTAATAGAGTACTAGATGGATAGTCAATA
GATCATTGGACATCAACTAAAAGAGGAATTGGGCATAACATAGTTTACCTATATATAAAA
CCATAAAGGCACTCTTCTCCAGGAACATATAAGTTACTGAAACAACATTACATTGGTTGT
TTTTTAATATTATGACAATGGCTTCTAAACTCACATGATGTGGCCAAAAAAGGATAATGG
TTCAGCTAAACTAAGTCTGCTAATTTACATCAGGCCAGATATGGGTTGGCAACTTGGCAT
AAATTCAATCTAATAAAAGAATCATCATTGCTATGGTGCATCAATCTTCAGTGCATACAT
TCAGTAATCTAACTTGGCAATGTGCAGCTCAACTGAAACGAATTCAACCTCAAATGGATA
AAACAACTTGAATTGTCCAGTGTAGATACATATTAGCTACATATTCAACTCGCTTTCTAA
TTAGTGATGAAATCTTCACAGGAAAATGCAACTTTGATCAGCAGAAAGATCCAACATCGG
GTGCATAACTATCTTCATATATAACTAATTTTCTTGATAAAACAAGTTTTGGGTTTTCAA
TGTGTCAACTGCACAGTGCTTGTGAAAAGTCAGTTGGTTGTGGATGGCTGGCAGCCCATA
TTAGATAAGAGTAGCGCATGCACATCAGTGAAGCCCAATAAGATAGCTATCTATAGTGTA
TTTGTCTATTTAAATAGACTCCTGAATACATGACTGAAGGTTACATCCAGGAAAGCTCCT
ACTTTCTAAGTAACATCCAAACCTGTTTATACAAGACAGAATATGTTGTGGCGTTATAAC
TGCAGAGAATACTAATACGAAGTCATGGCAGAAAATGACAGCGTTCTCTATGATGCTGCA
GTTACTGTGCAGCAGGCAACAGTAGCACCATGAAAATTTCATAATGACAGGATCTGCTTG
CAAAGTGAACAAATTTAAGCCTAAAGGAAGTTGCCGACTTATCATCGATTCTTGAACAAA
TAACTTTTGAGTGGGCATTAATTTCACATACTCACGTCACGAGTCACCTTTTTTAGATGG
TGGAGATTTTATTCATCCCCAGCCTCTGTTACATGCATATGACAGTCCAAAATGAAAAAA
AAATACACAGACAAAGAACATTAACACTCAAGGCACAGGAAAAGCACAGACGAAAAGTTA
ACTGCTAATTTCTCAGTCAACATTTCAGAAGTAAATGGGAAAAAAAGGAACTTACACAGA
ATTTGCGTCAATCCATTAAGGATGTCACCATTTCCCTCCTGTGCCATAGTTGCAAGATCA
AGCTTGTGTATTACAGTCTGACCCACAAAACCATGAAGAAGGCAACGAACTAGATGTTGT
TGGCCTGATCCGGGTGCTCCAGCAACTAAAGCTCGAAAACCTGTTAACTTATATGCTAAC
CCTCCTTTGTTCAGAGAACAGGTGGAACTCAACCTGCGGTCATCGAACTTCTCATGTTGT
TTGTTTTGACTTAACAACATTGAACCATGATTTCCTAGTTGAGATGCTGTAAGACCATAG
CTTGACAAGATTGATACAATTTTATCTCCAATATCTTTCTGCTGTATCAAAACGGGAAGA
TAGGAACACCAGAAAGTGTGAGGTACGTTGTTCTTTTCCATAGACGAAAACACCACTTCC
TTTATAGAGGAAGATGCCGTCAGAAGAGACAAAGGTAACCAGATTCGTTCATCCAAACAG
AGGGAAATAAGGAGGTGAAGCAATGGTTTAAGAAGGCATGGTAAAAGATAGGAATCAATA
GGAGCGGAAACTAGATCATTTGCAGCAATCCCTGCTTCCCTTTGTGAACAGGGTGGGGGA
GCTGCTGCAAGAGCAGACAACCAATCCCTTTCCTCCACGTCGATTGATGGTAGAGGAAGT
CGTCCATGTTCAGTTCCTTTCTCAGCGAAGCGTAAGATATCTTGCAATGGGCAAGTCCTT
TTCAGAGCATTTAATGCAGCTTGGGTACAAATTGCCTGCAAATCAGCACCAGCATATCCA
ATAGTTTGGCTTGCAACAGCTGAAAGGAATGTGCCTGAAATAGGACTAGGCCAGTTTTTT
GTGTGTAACGAAAGAATGGCAGATCTAGCCTCTAGGGTGGGGAGCGGGAAGTATATCTCA
CGATCAAACCTTCCTGGTCTCCTAAGAGCAGGGTCTATAGCATCAGGACGATTTGTAGCC
CCTATTACTATAACCGAGCCACGTGATTTCAAACCATCAAGTAACGAGAGCAAAGTCGCC
ACAACTGAATTGTGCGTCTGGTCTTGTTGTCTGGATCTACAAGGGGCTAAACCATCCATC
TCATCAAAAAATATGATAGAAGGTTGGCATTTTTCAGCTACCTGGAATAGAAGTCTTAAC
TGCCTCTCAGCATCCCCAACATACTTGCCCAAACAATCAGCGCCTTTTCGAGCAAAATAA
GCAATCCTTCTGTTACCCTGAGAGCATGCCCCTATTAGTGCCCGTACAACAAGTGTTTTA
CCAGTACCAGGATGACCATGCAGCAGAACACCTCTTGGTGGTGTAAGACCTAAAGAGCTA
AAGAATTCAGGATATAGAAGGGGCAGTATCACCACTTCTTTCATGCTCTGAATAACATCA
CTCAGCCCAGCAACAGATTCCCAACCACGGTACGCCTCGTCATTTTCAGAAGAACCTCCT
ATGTAAACAGGTGCAATCCTCAAAAGATCTCTGTTTAGCCTCTTCCCCTCACGTTTCAAG
AACTCTTCATCTTCCCCACAGTTCTCTAACCATTTCTCTTCAGCCTCTATATCCTTTCTC
CATGCATCATGTGACAACTTTCTGATATTGGCCTTCATCTTTTTTATCTTCATCTTCCTG
AGTAGTTCAGCATATTTATCTCCTTGGGGTTGGAAGAGATGTCGATGATCATTGCAAGTT
ATAAGAAACTTCCGGTGATCAAATATGCAGGCTTCTGTTCGACTACAAGGCTACAGAATA
GAGATGGGGAGAAAAATAATACATATTAAAGAGAAATAATTAATGATGAAGTGCAGCCTA
AGCATATAAAGTAATTACCAAATGGTAGGTTTTTGGACATCGATCAACACGGCACCCAAT
AGTTGCTCCAGGTCTACCACATCGACTGCACTTCAAAAGCCTTCCACGGCAAAGTGCTGC
CCTTACATTTTTTAGGCACCCTAAACCAGCAAAGTAAACCTGAAATTTAACACCAAAAAA
TGATTTTCTTATCACAAATACATTACAAAAAATCTCAGCATCACCAAAATCGCATTCAGT
TGTTTTTATTAGCAATACATTCTATTGGAATTCAGTAAGCAATCCACAGCAACCAATGTT
GATCCATAACCAGTTAACCACGTAGTGGAAGATACTATTTTCAGGAAATACAATCATGGT
GATAAAGAGGGGGTTACTGAGGAAGTGAGCCTAACTAACTTGGGTGAGGCCATGAGAAGG
TGGATGTACAAACCCACAATAAGTCCTCGCGGCGCAGATCTGAGCTCCTATTTACATTGG
GGGCTTTCCCTACACTGGGGGGGGGGGGGGGGGGCTATAGACAAGGGCATTGTTGCATGC
CTTCTTTTTTTAAAATAGAGCAAAAGAACAGCAATAATAAGCAACAGAAGAAAGTAGTAA
CTCAACATACACATTCAAATAGCACATAAGAATTTTGAAATGCATTGCAGGAACTGACCT
CGGGACTCCAAACTGCACAATTCTGATGAACCCAGACACGGGCAATCCCAAATCTATCAT
GTATTGGACCCAGTAACCTTCCAAGCCATCCAGGATCGTCACTGAACCCATCCCATATAT
CATAGTTGGGCTCCTCTGAAGGCATAGCACCCTCATAGGCTTCATTCTCGCTGTCAGCAG
TATCATGCAGTGCAATCTTGGGTGGCCTCCCATCAGTCCCTCCTCCACATAGCCCACACC
TCCTTCCTTCTTTAACATCTACAACTCCTCGTTTTTCATCTGACACTAGAGATTTCCCGA
CTCTCTCGTTCAGAGCGTCCTCAGACAACACTATATTTGGGGCATCATCCATCTGTCCAT
CCTGCTGGACCTCTTCCACTTGCTCATCAGGACCATGACCATCAAGTTCCATTTGCTGCT
CATCAGGAAGGTTGCTCGCTTCTGCAATCTGCCCATGGTGCACATCGAGCTGTTCATTCT
CCCCTAAATCGCCGAACTCAACCTCATCAGCATTCTCATCACCATTTTCTCCTTCTAGTA
CAGGTGAATCCAACTCTTTGGTTTTCTCTTCCTCTTGCAAACTATCCTCGTCCCCCACTT
CCTCCATGTTGCCTTCGTCTAGATCAGTTCCTGCACCGGTTGCTTCTTCCTCCTCCTCAT
ACTCATCATCTTCCTCCCCTACTCCTTTTTCCTCGTCTTCTTCTTCGACTACAGTGACAC
CCTCAGCAGCATCGTGAGTTTCTACACTAACATCGATGGTTAAATTGATCTCCCCCTCTG
TGACTTCCATCCCACGCGATGACAAACCTCCGCTCTCCTCGCCCCCCTCTTCCTTGGCCC
CCTCCTCTTCATCTTCGTCTTCGTCTTCAACCCACAGGGTCCTCACTCGCCGCCCCGCGC
CGGCCTTCCCCTTAGCCCTATCTCGCAGCCGCGAGCGCCAAGCCGCATTTCCCCCGCCGT
CCTCCTCATCCTCCTCGCCGTCCACTACTCGGGCAACAGCCTGGCCCCGTGCCCTTCCCT
TGCCCCCCCTCCGCGGGCTCCTGTAGGACCCGGCCACGCCCCCGCCGCGGCGGGGCCTCA
TGCGGCGGGGCGAGGGA
