morexGenes - Barley RNA-seq Database

Contig contig_135794
Source Contig contig_135794
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_135794 (8910 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_135794

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_5021	7	3565 bp	MLOC_5021.1	Available	Available	LOC_Os01g25820.1, FRAME:+3, EVALUE:0.0, 13101.m02734 protein respiratory burst oxidase, putative, expressed
CDS Structure of MLOC_5021

Contig Sequence (8910 bp)

>contig_135794 8910 assembly3_WGSMorex_rbca.fasta
TTGATTTCTCAACAAAATAGGATAGGTTCTCAACAAAATAGGATAGGACTGAGTACATTA
GTTAGTTAGCTTATTGTTTTAATAAATCAAAATGATTATAAAAAATTAAAAGCATGTGGT
ATTATTTTTCTCCCGTTGCAATGCACGGGCCCTTTTGCTAGTGGGACTCAAAGATTCTAG
GAAAAGCTGGAGAGGGGTTGGATTCTGAGAGAATCCCCAGATTCTAGCAAAAGAACTGAG
CCTAATACTACTACCACAACAGTGCATTTCACCTACAGTACTAAAAGACTGTAAGGATTA
AAATACTATATTTTTGCTGAGTTGGATGAGAGAGAAGGGAAACGGGCTCTTCGTGAAAAG
CTAGCTCTACCACGTGCTTCTAGGTGCTTTGTGAGAATGAAAGGTGTACCATATATGATA
AAAGTAGTACTCTTTTATAGCTAACTATTATACAAGCTAGTTATAAAATGGGCTATACTA
TTGACCATGCTCTAAATATGGATCGATTAGTACTTTGATGGAGGAAATAGTTGGGTACAG
GATCCAAGGCCGCAGTGTCAAGTTGTACTACCAATTGACAGTCAACTTGGGGTAGTACAT
GATCCAAGGCCCATCAACTTGTGGGTAAATAACCCATCTTGCCTGTGTCTTTTCTCGGTA
GGCACATTGTCATCCCACCCCCAGGGAAGCAAAGCCACCTGCATCTGCAAGCCTGGTTCT
CTCTGCTGGTGGAGTCCCGCGAAATGCTCCGGGTTCCAATCGCAATCAGTGGCTGAAATC
CCTCCCTGGTTTAAGGTACAAATCAAATCTTTTACCCACCCCACTTCGAGCTGTCAAAAA
GAAACGAATAAATTGGTCTTCCATCCATTCTGCTTCTGCGCTTGTTTCTTGGTTCAGTTA
GCGCGGTCAAATCTCGGCTCGCTCCCCCCCTCCTCCTGGAATCGAATCCCCTTTCTGCCA
CCAAGAAATGCGTTGCTGATTGAATGCTGCAGGCTCTGCTTAGCTAGATCTGAACAGCTC
TTTTGTGTGAGTGTGAGTGTGACTGTGTGAGTGAATTTGTCTCAGTCCGGGAGCCTCTCT
TCAGTTTGCTTGCTTCCTTCTTAGTAATTTCTGAATTTCTGTTACCGGAAGTAAGACTAG
CTCTCGGTCTCACCATCATCTTCTCGCGGAATCGCCGACAGCTTTTTTACTTCAGTTTCT
ATTCTCTTCCAAGCTCCTCCTTGGAAAATATCTCCATGGATCTGATTCAGAGAGAGATTT
AGCATTCTGTTTTCTTCTTCTTGTTAAGTTTCCTATAGCTGACACCAACCAATTCCCCCC
CGTGCCATTTGTCGCGTGGCCAGCGCGTCACGTTCGGAGGAGCAGAGCAGACACCAGTGA
GTGAGCAGTACCAGCAAGCCCTCGTGCGTTTAGGTCCCAGACAGCTCTGTCTGCTGTTGT
GCGTGTCTTTATTAAGGCCTCCTCTCTTTTGCTCTTTGCTTCTTCGTGCGAGAGATGCTC
CGGGCTTAAGGTACAATCTTTGCTCTTTTCCCCCCTTCGAGCTTTCAAAAAAGAGGGGCA
AGAAAACAGAGTATTTCTTTCCTCTGTGCTTGAAGCTTGATTCTTGGTTAGTGTGTGTGT
TTGTTTCTCTTTATCCTTCTTGGGGTTCAGTCAAATTTCTGCTATCCGTTTGGGGTTTCA
GTCAAATTTCTGCTATCCGCTTGGGGTTCAGTCAAATTTCTGCTATCCGCTTGGGGTTCA
GTCAGATCTCAGCAGCTGGACAATAGCTAGGATTCTGACAGGAAGGAAGAGAGATCTAAC
ACTCTCTTCTCTTGTAGTACTACTAGTAGTTTCTATTCATGTTCCTTAAGTTTGTAAGCT
TTTCGAATTTTTATTTTTGGTTCAACTTTCTATTTTTTGGTACATCTTCTGTAATTTTTG
TTTCAGTAGTACTAGTAGCTTGATTTGGCATCTTGGGCAGCTAACTAACTAACTTGCTGC
CCTTTGAGAGAGCAGAGAGGAGGAATTGTTCCGGGATTAGGTAAAAGAAGAAGGACATGG
CTGACATTGAAGCTGGCAAGCCAGCCACTGAATCTGACACTGCAACATTGATCCCAAACA
GTGGAAGCTTAGAAGGTTCAAGCAGGGCCACAAAGACCACCAGGTTCAAAGACGACGACG
AGGTCGTCGAGATCACGCTCGACGTGCAGCGGGATGCGGTGTCGGTCCAAGGCGTCAGGC
CGGTGGCCGCGGAGGCTGCGGTGGCCGCCGCGAGGAAGAGATATGACAGGAGCAAGAGCA
CCGCTGCGGTGGCGCTCAAGGGCCTGCAGTTTGTGACTGCCAAAGTTGGCGGCGACGGCT
GGGCCGCTGTGGAGAAGCGGTTCAACCACCTGCAGGTTGACGGCGTCCTGCTCCGTTCCA
GATTTGGGAAATGCATTGGTAACTACGTACTTGTTCAAACAGTTTCAGTTTCCTTGGAAG
AAAGAATTTGTATAGTTCAAGTGTTAATTGCTTTTGATATTGACTCTGTGTGCAGGCATG
GATGGGTCCGACGAGTTCGCGGTGCAGATGTTCGACTCGTTGGCGAGGAAGAGGGGGATA
GTCAAGGAAGTGCTGACCAAGGCGGAGCTCAAAGAGTTCTGGGAGCAGCTCAGTGATCAG
GGTTTCGACAACCGTCTCCAAACGTTCATCGACATGTTAGTACCAGTTCACTTTTGCTAA
ATGTTTTTTCATGGTTTCCTTTCTGCTCTCACTCTATATATAGGTGCACTTACCAACTCT
TTGTTCAGGGTTGACAAAAATGCTGATGGAAGAATCACATCAGAGGAGGTCAAGGAGGTT
AGTCACAACTCACAACAGAGGACCCCAAACTGAAAAATCCCCCTTCTTATATGCAAAAGC
AGAGCAAAATGTCATGCTGTAAATTTAAAGCATATTATATTAAACAAATGATAACATGCT
TGCAGATTATCGCCCTTAGTGCATCAGCAAACAAACTCTCCAAGATCAAGGAGCGAGCCG
ATGAGTACACAGCGCTCATCATGGAAGAGCTTGACCCTGACAACTTGGGCTACATAGAGG
TATATGTGTATGTCCAATCAAATTAACAATTAGAGAATCGCGGCACGGTTTCTTCCTAAT
TAACCACTCAATGTAAACGCCAACAGCTGGAGAACCTGGAGGCACTCTTACTGCAGCCAC
CATCTGAAGCCGTTGCATCGACCATCACCCACAGCTCCAAGCTCAGCAAAGCTCTTAGCA
TGAGGCTCGCGCCTAGTAAGGGCATGAGTCCACTTCACCGCTACTGGCAGGAGTTTTCCT
TCTTTGTAGAGGAGAACTGGAAGCGTATATGGGTCGCGGCCCTCTGGCTCTCAATCTGCA
TCGCCCTTTTCGTTTGGAAGTTCATCCAGTATCGCAACCGAGCTGTCTTTCACATCATGG
GCTATTGTGTGGCCACTGCAAAGGGTGCCGCCGAGACCCTGAAGTTCAATATGGCCCTGG
TCCTTCTTCCTGTCTGCCGAAATACAATCACTTGGATTAGATCAAAGACGAAGATTGGAG
CTGTTGTGCCCTTCAATGACAACATAAACTTCCATAAGGTAATGTCAATAAGTGGTATTT
CTGCATTAAGTAAGAACATATCCTGAGAATAACCTGCTGACGATGTCTGACAAATAATAT
AGCACTAAGTAAGATGTGACTTAATATAACCAGCTATATTATTGTGCAGGTAATAGCAGC
AGGTGTCGCAGTTGGTGTTGTTTTGCATGCAGGTGCTCATCTGACATGTGATTTTCCTCT
CCTGCTCCACGCAAGTGATGCGAAATATGAACCAATGAAGCCTTTCTTTGGGGAGAAAAG
GCCACCAAATTACTGGTGGTTTGTAAAAGGAACTGCAGGGTGGACAGGTGTTGTCATGGT
AGTGCTCATGTCAATATCCTTTGTATTAGCCCAGCCATGGTTCCGACGTAACAAGCTCAA
GCCCACTAATCCACTCAAGAAGATGACTGGTTTCAACGCCTTCTGGTTTACGCACCACCT
ATTTGCTATTGTGTATGCGCTGCTCATCGTCCATGGAACAAGTTTGTACCTAACCAAGGA
GTGGTACAAGAAAACGGTAAAAGTCTACAATACCCTATTAATGCCAATAGAAAATCTGAT
GATCAGAACTATTGATGCTTATTGACAATTTTTCTTGCTTTTACCAGACATGGATGTACA
TCGCTTATCCTGTCTTCTTATATTTGTGCGAGCGCATTGTTCGGTTGTTTAGAAGCAATG
ATGCAGTTAAGATTCAGAAGGTACCACCATGAAAAATCCCTTAATAAGTGCCAAGCCATT
TAACATGGGAGATGGATTTTTGAACAGCAAATAAGCCTTAAATTACTGAAAATTATGTAT
TCACTCTTTCTGAACCTTTAATTTTTGTGTCCTAAACAGGTTGCGGTATATCCTGGGAAT
GTGTTGGCTCTTTATATGACCAAGCCACCTGGTTTCAGATACCGAAGTGGGCAGTACATC
TTTATAAATTGCGGCGCTGTATCTCCATATGAATGGTACCCACGTTACACTTTGTGGAAA
AAAAAACAGTTGCATTAATATAATTTTGAAATCAGCAGATGACTAATAGTATAGAAAATC
TGTTCTATCACAGGCATCCATTTTCCGTTACATCAGCACCAGGAGATAATTACTTGAGTG
TCCACATTCGCACAAGGGGTGATTGGACTTCTCGGCTTAGGACTGTCTTCTCTGAGGTAA
ATCAGGTTTTCCGGCCTTTGGTTTGTCTAGTGACCACATCATGTTGGAAGTTTGTGTAAC
AGGAGAAACATGTCAAAAGATGTTTTGGAGAACGAATAGAGATATGCCAATAGCAATGTA
TGGCATAATTACATATAGGGGGTGTTCCAACACTTCTAGCCCCAAATGTATCGAAATGTT
GCTTAATACTAGAACTTAGATGTCTGAAGCATTGTGAACTGTTAAGGTTTCTATTTTTCA
TATCAATGCCATTGCCCATTCCTCTACTTGATGGAACCGATAATAACGTTAAATTTAAAC
CAGGCGTGTCGGCCTCCGACTGAAGGAGAAAGTGGACTCCTTAGAGCTGACCTCTCCGTG
GGAATCACTGACAGCAACGCAAGGTGAGAAGGAACTTCTTCAGCTGCTTCAAAAATGCAG
TATTACCACACAATATATTTTAAACTCTTGTTCTGATCCTAAACTCTGTATGACATGTAT
TAGATTCCCTAAACTTATGATCGACGGGCCATATGGTGCTCCAGCACAAGATTACCGGGA
ATACGATGTGCTGCTGCTCATCGGGCTTGGCATCGGAGCCACCCCTTTGATCAGCATTGT
GAAGGATGTGCTTAACCACATCCAGCGCGGTGAATCGGTTGGCGGAACAGAGCCGGACGG
CAGTGGCAAGGCAAAGAAGAAACCGTTCATGACCAAGAGGGCCTACTCCTACTGGGTCAC
AAGGGAGGAAGGCTCCTTTGAGTGGTTCAGAGGGGTGATGAACGAGGTGGCCGAGAAGGA
CAAGGATGGAGTGATCGAGCTCCACAACCACTGCTCGAGCGTGTACCAAGAGGGCGATGC
TCGGTCCGCGCTCATCGTCATGCTCCAGGAACTCAACCATGCCAAGAAGGGGGTCGATAT
TCTGTCCGGGACCAGCGTCAAGACCCACTTTGCCCGGCCTAACTGGCGAAGCGTCTTCAA
GCGCATCGCAGTCAACCATGAGAATCAGCGCGTTGGTACGTCGTCTTCTCGCTGTCATTC
TCACATCGATATCGATACGGTGTTAAGACTATATAATTGCCATTTTTTTCTGCTAACGTA
CCTTAATTCATTTCTGCTTCAGGGGTCTTCTACTGCGGCGAGCCTGTTCTTGTGGCGCAG
CTGCGGCAGTTGTCGGCAGACTTCACCCACAATACCAACACAAAGTTTGAGTTTCACAAG
GAGAATTTCTAATTACACATATGTATGTAGCTATAATGTAAGAACCTGCCTTTCTATGGT
CTGCGTCATCATAATAAGGTAGAGAAATAATAATCCAAGTTTTTTTTATATGGACCGGTT
TAGATGTTATGGCGAGATCTCGATTTCTGAACAAATCGTGAAACTGGTGGCACTTTGGGC
TTGCTCTACTCTAGGCTCTAGCTCCAAAAGTATCAAATCTGAAAATCAACTCCGACAAAA
AGATGACAGCTAAAAATCACCTTGAGCGCCGGAGGTCGGACAAGCGTTGGGCGGAGCTGC
TACTAGTTAAAATCATAGTCTCTCGTGCACCTGAACTCATCAAGCTATTTCGTGGTGCCT
CGATTAGTGACAGTGCAGATGCCGCCTGTACATGTACTGCCTCCATTTCTAAATACAAGT
CTTTTTTAGAGATTTCATTATGAATTGCATACGGACATGCATAAATATGCTTTAGAGTGT
AGATTCACTTTTTTTTTTATATGTAGAGTAGTTCATAGTGGAATATATAGAGAGACTTTC
ATATTTATGAACGGAGAAAATAGTACACAATAAGTTTGGTTTGCTAACCAAAATAACTAA
AGTAAAGAGCAATATACTATTCTCCATGATAGGTGTACTTCATCCAAGGGAATTACATAA
CCACAAGAATGTTGTAAAAGTTACTGACTAGAGAATGTATTGTGCAAATAGAACTGCAGC
AAGGTGGCCAGTCTGGAGTTTCTAAGACGAAGGAGACATTTTCCTGGGCGGGAGTGCATC
AACGTAGCAAGGACGGTAGGGGAATGCATGGTCAATGTCTCTAGCTTGTTGGTGATGATT
CTCAGGATATATGTAACCTCCTACATACTGCATTCTGCAAGTGTGGAGATGATATGTCCC
CACCGTCTCGTTAAATTTGAGAAGAAGCGCATCCTTGTACGGGTGGAATCCAACAATACT
GCAGCCCCACCCGCAAAGGTCTTCTTCTGGAATTGTACTGTTGTCATAGTCAATGAAGTT
GTGCTCGTCCGAGTTCCATGAGTAGTCGGAACCGTCTCTACTCCTGAATTCCTCCTCCTC
CTCGTCATCGTTTTCGTCGCCATCATCATCATCATCATNNNNNNNNNNNTCATCATCATC
ATCATCATCATAGTTATCTTGTTCTTCCTTGTCTTCACCTTGTATCTCATCATCATCATC
ATCGTCATCATAGTTATCTTGTTCTTCCTTCTCTTCACCTTGTATCTCATCACCATCATC
CACATAGCTATCTTGTTCTTCCTTCTCTTCACCTTGTGTCTCATCATCATCATCATCATC
ATCATAGATATCTTGTTCTTCCTTCTCTTCACCTTGCGTCTCATCATCATTATCTTCTAG
TTCATCCTCTTCATCTTGTGCCTCGTCATAGTTATCTTGGTCATCTTCCTCTCCACCATC
CTCGAAGTCTCCGGTCCCATCATCGCAACCATCATTGACTTTCTCATTGTTGCCACGTTC
GAATAGGCTGATCAAGTCTTTGTTGCCTGAAGCCACTTCCCATGTCATCCTTGGTTCTAT
CCCCGGTTGACTACTCAGATATCTCATCATACGGTCATGAATTTTGAGGTCGGCACGGTG
TGCCAAGGTCCATCCCAACGGATCATCGGCCAACTCCATTAGATCCCAGACTTGAAGCAG
GAAATCTTTGACCACGGCATAGCGGATCCCCCTATTGCAGCTCCCTAAGTATCTGGTTGG
CAGGGCCCATTGATACAATATCTCGCGGTCACAAGGATGCCCCGGAAGCTGAACCATCTG
GTATGTCCCCTGGTAGCAACGCAGGATCATGAGGACACCACTATGGCAGTGCACGTAGAG
CGAGCCGTGCCAGTACTCGGCCGACCACCACGTGCGCTGGTCCTTGCAGCGCGGCGTGGT
CACCACATCGTAGAGGTTTCCCGGGGCGCAGCGCCCTGGCGTGAACTTGCGGCTCTCCCA
CCGGCCTGTCCGTGAAGAGAAGACCAACACGTGGAGTACATTCTCCTTGGGCACCTTTGG
CTCTTCTTCCTTGGGTTCAGATGGTTGATCTTGTCCAAACAAGTTGGGTGGCCAGTCATC
GTCCTCGCCGTTGTGTTCTAGCTTTTCTGTGGGAAAGAAGAAGACCTCGTGGTGCCGCGA
CACGGCCGGGTCGAAGGCCAGGAACATGCCCTCGACGCTGCACGGCCAGGGCGTCGGCGG
ACATGGCAGGCGGGCGTACCGCGACGTTGCTGGGTTGCAAACATAGGGAACCATGTGGCG
ATTGAACGAGAGCTTCCCCGTGACGAGGAGCAAGCCGTTGCAGTGCTGATTTACATGGCA
ATCCCAATGGTCCCAGAGGAGACGCCGGTAGCCGGGCACGTGGGCGCCGCCCGACGGCGG
CGGCGGGCCGAACAAGGCGAAGCCGGGGTCGTAGCCGTGGTAGGTGCCGAAGACGCCGGG
GAACTCGCGTGGGAAGACCTGCGGGAGGAGGAGGGCGTGGGTGTGAGCGCCGATGAGGTC
GCGCCATGCGCGGCAGACGCACCGGGACACGGCTAGGGCGTGGCCGGGTAGGCGCCTGAG
GATCTCGAGCAGGAGGTCGCTGGGGAGGGCTACGGCGCCGCTGCCGTCCATCACGCCGAC
CGGATCGCACACGAAACTCTGGGTGGCGGCGATCTCGGGTACAATGGGGAGAGGAATAAT
AGGGTCCGGCGATAGTAGAGTTGTTGTATGGAAAAAGTCCATTTTAAACTCTGAATTCGT
AGGTGGTCGGTGAAATAAACCTCAAAGTCGAAATCCCTGTCGATTGCACCCTAAACTAGG
CAATCTCGGTCTAAATCAAACCCTGGGACGGTTTGTCAGACCGGGATTGCAAAGGATGGC
TGGGATTGTTTTTTTTCTTTCAGAAATTTGAAATAGTTCACGGAAATAAGGAAATGTTCA
CGAATTTGGCAAAAAGTTCATGCATTTGAA