morexGenes - Barley RNA-seq Database

Contig contig_135703
Source Contig contig_135703
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_135703 (6443 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_135703

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_4948	5	1381 bp	AK367130	Available	Available	None
MLOC_4947	1	935 bp	MLOC_4947.1	Available	Available	None
CDS Structure of MLOC_4948

CDS Structure of MLOC_4947

Contig Sequence (6443 bp)

>contig_135703 6443 assembly3_WGSMorex_rbca.fasta
GGGATAGCCCTTGAACCAAACACACCGTAAGATGGGACAAGGCGTCTCCGTCTTTCGACT
TTGGGTGCTGGCGAGGCGTGCCATACCCAGGGACATAAACAATGGCAAATGAAGACTCAC
CTACTCAGCATGCGTATTCTGCTGCATCTCCTCGACGTCTTCTACAACCGATTGTTTGGC
TATGGCCAATAAGGTCCTTGTGTGTCATCCGTTCTCAGGGGTCTTAGACGGGTCATCAGC
GGCAAAGTTGGAGTCGCCTGTTTGGGAATAGGTGGCGGCGTCCTCAAGGGTCTTAAACGG
GTCATCGACGGCGAAGTTGGAGTCGCCTGTTTTGGAATAGGTAGCGGCGAAGTTGAAGTC
GCCTGCTCGGGAAGAGGTGGTGACAATAACATTGCAAACAAGCTCAATGATATCCTACTC
AGCAGTGTGTGTGGTCTTGTTGATGCCAGATCAACCAAGTGCCCTTCTTTGTGGGTATGC
TGTAACAGTCTTCACCTGGATTTCCATTAATTAATCGAGCAACACTATTCATCCGTTCTT
AGTGAATCGGGCTCTAGGGGAGCGTGTTTAAAAAAAAATCTCAACGACTATGACTTTATC
ACGCAGCATGCATTCCGTTATGCTATAGTAGAACCCATCTTCTGTTTGGGAGGCGCATTA
TGGAAAAAAAGAATGGGTACCCCGGAGAGACGAACACAGAACAATTCCACAGGCATCAGC
ACGCATTAATTCAGGCGTGAAGGTGACGACGGCTCACTCTTTGTCTCACTTGTAACAAGC
AAACTCCCGTACAAACGGTCCATGAGAAGGAAAATGGTGCCATGTCGCATTATTCCTCTG
TGGTACGGATCGGCACAACCAGCCAGACCACAACTCAACACGATTCGGTTCACACGGAGC
ACCTATCTCACACTTTCTGACGCACTAGCCAAGCTGCTTCTCTCTGATCACTTATTTTCT
ACTCCCACCATTCCTAAATATAAGACCTTTTTAGAGATTCCACTATGAACTACACACGGA
TGCATGTGTTCATATTTTAGGATGTAGATTCATTCATTTTGCTCCGTATCTAGTCTATAG
TGAAATCTCTAAAAAGTCCTATATTTAGGAACGGAGGGAGTACCATGGAGGTGGTGGTCT
ACATCAGGCTGTAACTTTCTTGGAAGTCACCGAGTTGCAGATGGTGGCAAAGTCAGGACC
CTGCAACACACCCAGATATTTTGCTTAGCAGAATCAAGATGATAAAGCAGAGATATATAT
ACGACAACTGAGAACACATGGCATTAGTTCTCCAATTGAATTGCTTTCCTTCAATTAAAC
AGAAGTCAATTACGACTCAAAAAAAAAACAATTTCTCATACCTTCAAAGAGGCACCACCA
ACAAGGAAGCCATCGATATCTTCCTTCTTTGCTAGCTCAGCACAATTTGCTGCGTTTACA
GAACCTGCAACGGAAAAGCATACGAGGATGGTCATACAACAGAATCAGTCTTGTTAGCCA
TATAACAAGTTTGGCTCTAATCCAAGAGTCCAATGCCCTAAGAGGTGAAAACAGTGGTTG
GGAACTGCCCAGATTGGGGCTTCAAGATATTTATGATAGCAGGAAGGGGGTAGTGGCTTT
GAGGATATTTATAAGACAGCATGTCATACTTAATTTATACTCCAGTCACCAGTCTAATAT
GGGTGAAACAGAGAACACATTGGCCCCGAATAAAAAGGCCAAGATAAGAAACTAACCTCC
ATAGATAATTCGAACGGTCGAAGCAACATCAGCTGATACATTGGTTTTTAACCAATCACG
AACAGCGGCATGAACTTCTTGAGCTTGCTCAGGAGAAGCAACCTTTCCGGTTCCAATAGC
CCACACAGGCTCGTACGCAATAACAACGTTTTTCCAGTCCGTAATATTATCTGAAGCACA
CATTTTGCAGATAAATCAATGCTGTTCAGGCCCACCACCAAGCCAATAAAGATGAATAAA
TTTCACCTGCAAAAGCCTTCATCTGCTTAAAACAGACATCAAAAGTTTTCCCAGCCTCCC
TCTCTTCCAACAGTTCCCCTATGCATGCCATAACCTTAAGATTTTGACTCAAGGCATATG
CAGCCTTCTTCCCAATAAACTGCATTGGATAAACTTGTTAGATCGCAATCCTAAACTAAA
TTAGTGCATGATAACAGCAACTATACATCTCAAAGTCAACTTCAGACTCCAGAGAAATGG
ACAAGAAAGAGAAGCACAAATTCAGTAGCATCTGCAATTACCTGATCATCTTCACCGATA
ACATGTCTGCGCTCAGAGTGACCAAGAATAACCCATTGGCAGCCAATGTCCACCAACTGC
TCCGCACTGGAGTTTTCCAATGAGAAAATAAAACTCAGAAATGAAAGCTCAAAAGGAACA
AAAATAGAAACAACATTTTGTAACCCTCATCACTTAGTACATTCCAATAAAACAAACATT
TTTTCGTCATCAGTGCGGCAGAAGAATTTGCAACCTCTTGTGTACCAGTAAAAGACAAAG
TCGACAAGTTTAACTTGCAGTATCCAACCTGATCTCTCCAGTGAAAGCTCCTCCTTTTCC
AATCCATGTGTTTTGAGCAGACACCTCAATACGGTCAGTTAGTGAACTCTTGACCTGGTC
GATATAGATGAATGGCGGTGCTACCACAACATCTGCACCATATCCACAGCTCCATATATT
AATATATCGCTGAGTTAATGAGACAAGCAGCTAAATATCTTGAAATAAACTACATAATCA
CATTTACAAGGTGAATTGAGCAGCTCCATAACAGTAGTCTAATAAAAGTAGTTACTGAAC
TGGTGCAAGCAAACTACTTGTGTCTTCCACCATGAATTTTTTTACCTTTTGGTGACCCGC
GGTGTAAAATTCCCATATAAAAATAAACAACCATGCATATTGCTACTATGGAGCATGTAG
AAGCTAGTGCGCTATCCCTTCTCTTTTGGCCAACTTGGTAACCAAGTAACTACCTAACAA
CCAGGAAGAAGTGCTTCCATGACACTGATGCTCATGCATGATGTATGCTACCATATATGG
TGTATGGAATTATTATTTTTGCTGGACAAGGGGATCAAGACTGGTTGAAATGGGTTGGGG
CTAGCAGCTTGAACTTCAAAAACAATAGATAAATAGGTTGGGGCTAGCAGGGGTCTACAT
TTCTGGTGAACACTACTATAGAAGAGCAAATGTAGTAAATAAATTACATAGGATGAAAAC
ATGGCTAGTAGAAGGTATATGTATTCAGGAAAATGTCCATACCGAATGGAAACCGGCACC
ATTGACATGTTGTATACCAATTAAACATGCACACCTATTGCACGGGTCATACCGAAAGGA
AGCTTAGGATGCTTAGGATATGCGTAGAAGAAGCAAATGAGCTTACCTACATCGCTTTCG
AGTGTGGCAGCATTCAAATCAGAGACAAGCTTGCTAATGGATTCCTTTGTTCCATTCTAG
AGTAAAGGACAAGAATAGAAATCAGATATTAATCCAAAAAAATCCGAGATACCTGAGCGA
AACATTAAGCAATGTAACTTTATATAGTCAACAAAAGCTCCCTATAAATGTGAACCAAAT
GAACACATAAGCATAGGAAGGTTCCCCCAAATCATGTACCTGCTGCCACCTGAATACATT
CACATGGCAACGACCAACTTTTTATTAGACCGATGGCTGCCCCCTGCTAAATGCCTTAAT
GTACGGCGTCTCTTATCTCATGATTAAAACACCACTGACATAAGTATAATAACTAGCAGC
ATTCCTCTGTTTCGTAAGTGTCGCATCAAATGCCGCTCAAATCTCGACATGATGGAATCT
GACGACGGTTATATCAAGGGACATGACAGACCGGAAGTTGCAAAACTAGGCGGCACGGCA
CCAAAAGCAACTCTAATCCTAGAAGAGGGCCTCAGTAACGGTGTATATCACGATGTCTGC
ATGAACGAATAGGGACAAACGAAATCCCCCCAAGGCGACAACCACAATGCCGCCGCGAGG
ACCAAAAACGTCACGCGGGGCGCAAGGGGAATCTCCACCGCCACCGTACTCGAGATTCCC
CCATCGGCGCGGTGCTGACGCGTGAAACCCGTGCTCGCAAAGCCGGCGGGATTGTGGGGA
GAGCGGGGGGGCACTTACGCACTTCCAGTTGCCTCCGACGAAGAACTGCAAAGCGACATC
AGAGCCGGAATCAGGCACGAGCAATAGATTTCACCAGGGAAAGTAGCACGGGTAGGGGGC
GGTGGTGGATTGGTGGGGCGGCGGTACCTTTCCGGATCCGGCCATGGCGACGAGGCGCTG
CGCGCGGCGGCGGGAGCAGCCGAGGCGGAGCTGGTGGTTCTGGTGGTGGGGCTGCGGGGC
CGGGGCGCCGGCGGCGGCGAGGCGGGAGAGGTGGGAGGAGGCGAGGGACGACGGCGCCGC
CATTCTCTCTCAATCAAATCTGTGCGTCGCGCGCTGTGATGTGGTTGGTGGGCGAGGGAG
GCTCGAGCGTCTCCTCCTCGTCTGATGATGCGCGCAGCAGCCACCACACCAACCACAACC
AGCGGTCGCACGGGAGTGGGGAGCAGAGGGAAAGGGGGGAGCGAGGGCGACCCGTGCGGC
CACGGTGGCTTTGTATGGCCGGCCGCCTCCGCCCGCGCCTGCCTTATCGGCCCACGGATA
GGGTGCCGAGGGCCGAGGATTCCCCTGCGCTCCTCGCTCGCGGCGGAGCTACCTACCGGG
GCGGGCCGGGCCGGTCCGGATGCGAGGGCGACAGGCCACCGCAAGCCCTGATCCCTGGAA
CCCACGCAAGGAGATGAAAGGAATGCTCTCCGCGTCCGCCCATGCGGTGTCTACCTCTAC
CTGGCAGGCAATGTACGAGGTAGAGGCAAAAACTTGAATAACAGATGACGGATGGATATT
TAGAGAGCCATTGGTATCTTTAGTTCATCGTGCTCGTATCATTTCTGAATTTATTTCAGG
ATTTTCGACAATGCGTGTTTAATGAAAGAAGATGTTTTCATCGATGACGAGACGTCTACG
GTGTTTCATAAATTTTAAGTTGGTATGTCATCTCACTCTCTTAGAGGTTTTATAAGGATA
GGATGTGCATGTGTTTGTTTATAATGATGAGTGTATGCGCGTTTATATGAACGTTTGCGT
CTGTATGGTGTAAAAAAGCAACAACTCCTATGAACACGTCCGAAAGATTAATACGAGCAT
CCGGACTTGAACCCGGATGGACTGGGGATACCATTATCCGTCTAACCATTCAACAACATG
TTGGTTCATAGGAGGTGCTTGTTTCAACCAACAACATCATTTTATTCTGAAGCGAAAGAA
GGGCTTTTCCCTTTTCAATTTCTATTATAGAAACCAAATTTAAACTACAGTCAGGACATA
CAACTACCCGAGTTAACACGTAAAAACAAAAAATTAACAACATGCCAACATATCGTCGTA
GCTTCCTAAACTATCCCTTCCCTCTCCTGGTGCATCAGCGAAGAAAGGGAAAAGAACTTG
CGCACAAAACCAACCATCCAACATTAAGCAGGTTCCACACATATGGAAGCAAAAAAACGT
AAAATGAAACGTCCTAACTGACTATAGCACCAACCATTCCAGCAAAAGCATGGCTAGTTT
GCAGATCGTCTAACCTCCAAGCACATAACAATATATATCCACCCTTGAGACGACGTGTAA
ACTTCACTTGCTACATTTTGATCAGTACCATGGGATCGCCGAACATCTTTTTATCAAAAT
AATTCCATTTCCGCATTTGCAGATTGTCCAGAGTAGGAGGAAGTTACCACCAGGACGAGT
TTCTTGTCATTTTTGTTAAATGTTCTAATCCATCTCCCCGTGCAATAATTTATAGAGGAA
GGGATTGATTTTAAATTGAAAGCACGTTTTAATAAGCTTCAGATAAAAGAAGCAGCTGAA
AAATTGAAAAAAAGATGATCTACATATTCATCCTCATCACATAATACACATCTTTTTTCA
CCCTTCCAACCCCTCTTGCCAAGAGAATATCTAGTATGGATTGATTTCCTATTACCTAGC
CACATAAACACTTTGATTTCAGCAGGCACTTTGACCTTCCACAAGATTTTTTGAGGGAAT
TTGCAATTCTCAGTAATATCAGCTCCCCATAAAGAGATTATATTATGAATTTCTTATCAG
CATTTAACACCCATTCTATCTAATCTCTACCAGTACCCAATTCAATGCTCATGCACCTAC
TTTTAAGATTTTTTCCACAAATCTAAGGTTTCTCCATATAAGGTTCTTCCAAATTTAAAC
CCTCTCCATGATGATCCACAAGTATAGGGNNNNNNNNNNNNNNNNNNNNNNAAGTAAGAG
TGTCGAACCCAACAATGAGCAGAAGGAAATGACAAGCGGTTTTCAGTAAGGTCACAAAGC
ATATTCATATTCATAATCAGAGG