| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
No map location | No map location |
Predicted Genes from contig_135682
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_4932 |
1 |
608 bp |
MLOC_4932.1 |
Available |
Available |
None |
| MLOC_4933 |
3 |
1135 bp |
MLOC_4933.3 |
Available |
Available |
LOC_Os09g25280.1, FRAME:+3, EVALUE:3e-48, 13109.m02416 protein retrotransposon protein, putative, LINE subclass |
| MLOC_4934 |
1 |
2743 bp |
None |
Available |
Available |
LOC_Os05g32390.2, FRAME:-1, EVALUE:7e-76, 13105.m03334 protein FZL, putative, expressed |
CDS Structure of MLOC_4932
CDS Structure of MLOC_4933
CDS Structure of MLOC_4934
Contig Sequence (7441 bp)
>contig_135682 7441 assembly3_WGSMorex_rbca.fasta
GGGGGGCGGGGGGGGGGGGCGGCCGTCTCCGCCTCCGCTTCCTCCCCTGCGCCGCCTGCA
AGTGCAATGCCGCCAAGCGCAGCCAGCGAGAATCGCGAGAAGGAAACGAGCATGGAGCAG
AGGAGGCTGGTCAGGAGCGGCGGCCGGAGGACGCGCACGTCGTCGCGAAGTACGCCCGCG
GCGGGCGGTGCGTGGAGGCGGAAGGTGGCGCGACGGCGGCAAGGCGCGGCGGGAACTGGG
AGCCGGAGCAGGCGGCCGCGTTCTGGGTGGCCATCACCTGAACTGAAACGGATTCATCGG
CTAACAGTGCTGATGAATTTCCTGCTGAATTAATTATGGTTTCAACATCAATTTCCACCT
AGCTAGTATCTGGCATTCTGGCGGTTACCCACGTACACGTGTACGGTCGACGAGCAGCTG
GGCACTATTTTTCTCAACCTGAGGCTGAGAGAGATCTGTCAGAACAATGGTTCAGCTGGC
CTGCCTACATTGCGCAGATAGGATGTACTACTAGATTAGTATGTTTCCTCTCGTATTGTA
TTAACTCAAAGTCTACATTGCACAAAAGTATCTGAAGTTTGCTTTTGTGTAGCATTGATT
ATGTGTTTACTGCACAAAATGTTTCATGAAATATGTAAAAAAATTAAACAAGGCAGAATA
TTTTTCATTTCACTGATTAAGGAAGAAGGTTTACACAAAGTCACAAGGCAGCAAAGGAAA
TAAAGATCTATTTTCGTGTCATTACAATACTCAAGTGTTTGGCACCTGCTAAAGCCTAAA
GAGACGGTTCCTCTTTAATCTTGCTAATAAAGACCATCGAAGGAGCAGCCGTGTTGAGGA
AGATTTTAACATTACACTTCGAACAAATCCCCCAAGAAATGGGCATAAGCAAGTGCCTTG
AAGGTTCCGCTACAAATATAAACATTTCCGGTCCACCATTCCAAAACTGAGGCCCTCATC
ATCCAATCAGTGGTAATAATAGCATGAGAAATATTTTCTCATGCATAGTTGCATGTGGAA
GTAGGCTTTATCACATCCATAATTATATGGTGATGTGACATGCTTGCATGTTAAGATAAA
TAATTTAATATGAATCACTCTCTTAGGTATGTAGGATTTGCAAGCCTCTGACCCAACTAA
TTTTCCAAGATTTATGACCTTATGACTCTCACCAGCTGCTAACTTTTCTTCACAAAATAA
AGCGAAAAACTACATCCTAGAACAAAGTGATTCGGCTACAGGTGTCAAATTAGTGGGGGA
GACGCATATGGCGCTGCCAAATGTCAAAGGATGTTATCTGAATGTCAACGGACAGGTGTT
CTATTCTAATGTCATATCTTCTGAAACAACATTTTCCAGCCCCAAAAGAGTTATAAACGT
ATTATTTTACAAGTGCATGAATATGCCTTCACTTAAGATATCGAAAGCATGTATAGGTCG
GTGCCACAAAACTAACCATATATATACTCCTAATAACAATGCAAATTTAAGTTTTAGTCG
GTCATTCATGGGTGCATGGGATGGCTTTATGTTACCCAAATCAAATAAAGGATGCGATTA
CCTCCTCCGTCCAAATTATGCTGGCTCTACAAGTACAAGGTCAGATATAATAACACTAAC
AAAAAGAACGTTAGGGAAATATATGCTTTGGCGAAAGTGGTTTGACAAAAATCTTGAAGC
TCGGCTTCTTACACACACTTGCATACATACACACTCTTCTGGCTTATGCACTCATGTCCT
CCTTCACTTTCATGTGAGATCGATATAGAGGTCATCACTAACAAGTTATATTTCAAGGTA
GGGGTTGACCATAGTCGAAAAAGTTGCTCTCCCACATGGTCGAAGACATGCACATGCTCC
TGGAATGCGGATTTTTGAAGGCCGAGCTCCATGAAGCTTGTTTAAGAAAATGATATTACT
TTTAATTCCACATACCAAGGGAATCAAGAGAAAGGCACCCTCGTTCCAAATTAATTGACG
CTGCTTTAGAAGAAAAGAGTACTTCAAATTTATGTGCTCAATATTTCATGAAACGTGGTC
AAGGGTTAGGGCATTGGAGATGTCGATGGGAGAGATCCAAATGTTGTTTGTTAAAGCTTG
CTGGACCGAGCGGTTTTTGTGATGATATGGAACCTCTGAGAAAAGATTGCTCAGGTCACA
CTTGCTGATGATACGGAGGATTCCATTATTTGAAAGTTCAGCAAGGACGGTTTGTATTCT
GCCTTCTTTGCTTATAAGTTGCAATTTGAGGGCCTTACTACGTTGGGCATGGTCCATTCA
GTGTGGAAGGTGTGGGGTTCTGTGCGGTGTAAATTTTTTATTTGTCTTGCTCTTTAGAAT
AGGGTTTGAACATCGGATCGCCGTATCCGTCTTGTATGGGCCAACTATTGAATAAATAGT
TTACAACTATACATAATTAAATATAATAAGTCATATGTATTTTAAATTTGTTCATGTGTT
ATTAAACTAAATATTTATGTTTAACACAATCAAATCTTGTTGAAATGTGTTAGAATCGAT
TCCTAAATCAACTGCCGAGTATCATCTACTTCAACAATACATTCCACGAAACTACTTTCT
TCGTCCCATAATATAAGATCGTTTTCATAAAAAAAATTGAAAACGATCTTATATTATGGG
TGGAGGGAGTATCGGAGTAACTTCTAGTGACTATGATGACATCAGTTAATTGGAGTATAT
TTTACCTAGCTAGGACGGAAGCTGTTTTGTCCCCCCAAAAACCAAAAGTAAACCGAGCTA
GCTACTCACCTACTCTTTCAAAGTTGAAACACGGCCGAATGATGTCAAGTCAACTCGACC
ATCTTTAATTTAAGCCGAGCTAAACAATGGCCGGAACCTTTCCGCGCGCATTGCTTCGAA
TGTCTCCACTCCAGCCTCTCTTCAAGTGATCGCACATTCTAGGCTTATAATTTACTTAAA
ACACAAAAGTCTATGCGCCGCTGAATCAGATGTAGGGAGGGACAGCGGGGCTGAAGGACC
AGAAGACATGCATTAGCGAAATTTTGCATAAACAAGGACAGACAGACGGGATGAACACTA
GGAACTAGGCGCCCCACCAAGGTTTCGGTGCCGCGAAAATTCAACTGCTTGTTAATTAAT
CCGTGCTTCGAATACGAATAAAATTTTCAAACACTTGCTGGTACTGCATTGCTCGCCGAA
TGTCTCGCCCTTTAAGGGCCTTCCTTTTCTAGTTCTAGAGGAAGAACAAGTTCGGTGTTT
GCCATCTGTTTCCCACAAGTTATGTCCCTTCTTTAATCCTGGAGAAAGCATAAGTTCATT
GTTTGCGTATTCCATCTCGATGCCGAGGTTGGAGAAGTGGCTCGATTATTCAGGGGAAAA
TGGCAAGATATATAACAGTTTACAGTTTCTGAAGTGGAGTAATTCTGATGCATCCAGATG
AAAGAATACAGAGCTAACATACGAACCAACAATTGATATGAACACATTGATTTCCAACAC
TTCCATATAGGACAGCAGGAGCACCGGAGTAGGCCCGTTACAAAATCTGTAAAGCCTCCC
TCATGGGCAACTACCTCAAATGGTGATTCGTTGAACTTGCGGCATTTCGTTACAAGGTAC
AACATACATACGGTCTATATATTACATACACGTCTATCATACAGCAACTGCTCTACACCG
TCATCATCTCGCGGTACAAGACTAAACAAAAATTGATGATCGTGTGTAAGGTGCAAACAA
ACGAACAAAATCTCAACGAAAGCAAGCGTTGTCATGATCCATGCAGATTTTGGATGTCGA
CTTTCAACGTTTGGAGCTTACGCTCGACAGCGGACAACTCGCCCTGAACACCCTGCAGCC
AGTCTATTTTTCGCTGGCATGCTTCCTGGTACGGTTTACTGGCAGTGTCGACGAACTGGA
CTAGCTTACTAGCACTCTGAGATATATCCTTCTGAATAGCTTCATCAACTTTGCGAGATA
GTTCATCGGCAGCCTTGCTGACCTTCTCTACCGCAAGCTTCCGTCGGCCAGGAAAATTTG
ATATTGCAAAAAACCTGAAAAGGAGATCAATGGCCAGTAGATTAATACGCATACACTTTG
TTGTTAAGTATAAGCTCATCCCATGCATTCCAAACATAACATGGAAAAGAGTGGTTTATA
TATATATGATTATCAATCAAGAATTACCCGCCAGCTGAGCAAAGAGCAAGAGCAAGTAGA
TCTTCGAGCGTAGTTGTCAGAACAGAAGTCAAAAGAGACGCTGACAATCCAGCAACGCCA
AGCCCTCCAAAAGTTCCCGTAGCCTTCACGACACAATAACAGAGCTCAGAATGATAAACA
GACATGTTGAAGTTTAACTCACAACTGAATGAAGAAGCATTTTTAACTGTGAAGTCTTTC
CAGACTATGTGGTTCAAAACTACTATATAGTATTCAGTCAAACCTATCATACTTTGAAGC
CATAAACATGGATTGTGCCTTACAGATGGATTGTACTCCCTCTGCTAAAACTAAAATATT
TTTGATAGAAATTGTTGCAAGATATAAGGTGTAAATAATTTTCTTAATACTGCTTTAATT
TTTGACATTTATTTGCAACACACTCAAAGCACTCTCCTTCCCAATAAAAAGTGTGACGGT
TTAGGAATCTCCCCATATGCCTTCCTCAAATATTTAATCTCCATGATCCGTGTGCAATGT
CAAAACAGGGCTGGGTCACCAACTTAAATAAAATTCACGAGCATGATTTAGTGAGAGGGA
GGTGGTCAGTCGCATTATGCTCTGACTATCTTTTCCGCAGTTTAAAGACTCTGGTACCAC
CTATGATCATTACAAATACTCTGAAAAGGCATGCACTCACATAATACACTAAACCATCAC
AGCTGGGTCGTTACTGGGTTCTCCAAAGGCCAGTGTAATTTCTCCAAAACGAAAATTGTT
AATTGTCCAGAAAGGCACCACCATGATGCTTACGCCCAGGAAAATTCACATAAAGTTTTT
TTAAATACATTCCTAAGAACAGAAGAATTGAAACCAAATTATAAAGCATGTGCATCAAAA
CTAATCTTCTTTCTATCTTGCTAAGAAAATAGATAAACAAACACTAGTACTCCCTCCGAT
CCATATTAACTGACACTGAATAAAGTTGTACTAAAGCAGCGTCAATTAATATGGATCAGA
GGGAGTAGCATTTTGAAATATCTGTGCTGAAAATTGAGGGACTGGAAGACACAACTTTTT
GTCGTTTTATTAAAACGCTTTATATAGACAAACTTACTATAAGGTTTACGGAACGAAAAT
AGTGTGTGCGGAAAAAGGGGAAATTATAAATTTTAGAAGACATACCACTTCACGAATTTC
TTCTTCAAAAACCTTAGCAGCAGCAGTAGCACTGAAGCCATCCAGTGCATTTATGCTGAG
TTTCTCTCCTTCACTAACAAGCTCAGTTGGATCTGATGAGACCCTTTCTTCCTGACTAAC
CAATGAATCCCATCTTTCATGGAAACACTCCAAATATAAATTTGCTTCACAGGTATTGCT
AGAACTCAACCATTTTGAATATTCACTCAATAAATCCTAAACAAAAGAAAAGAAATATTT
ATGTTCATAACATGAATCATAAGCATGGTGAAGCAAATAATAAAAGCATGTCAATGAAAA
TCAAGAATGATGTTCCACAAAATATTGAAGCCTTATCACGGGGCTTAATACATTTAACAA
AACGCTGCCATATTGTAACACTAAATGAAATCAACACATTTGAAAAGCTTCGGACAGATA
GGTGGGCATGCCTTATTATGAGGCTCAATATGTTTGACAAAACGCTGAGATGTTTTAACA
CTAGATGAAATCAACTCGTTTGAGAAGCTTCAACATATTAGGTGGACATGCCTGTGCCCA
CATTCAATGAACTGCAAAACCCAAGTCTACAAGAAATATACAGAAATAATAGATGAAAGT
GGGAGGTCTGCAGATTGCTTGGACAATGATCCTGTTAGCATAGACAATGTTGCTGGAGGT
AACAAAGTACTGACAAGTCAGTTTTCACCGGCCTTGGGTCGATTGTGCTTGGGTTTTGTT
ACCTCCAGCAAAGTACCGGCACAAGTACTGACAGTGAAAGTACTGACAAGTAACAAAGTA
CCGGCCTTGGGTTGACAGGTGCTGGACAGGTGCTGGACAGCGGACCGTCTGCGCCGCCGT
GGCCTTCAACACCATCCACGCTGTGTCCTTTGCGACCAAGAGCATGAAACGATGCGCCAC
TTGCTAGTCACCTGCCCCTTCTCGCGGTAGGTGTGGCATGACACACTCTCCTGGGTGCGT
TTGACATGCCGGCCGCCAGACCAAGAGGCCTCCCTAAACGACTGGTGGATGCAAACCAAG
CTGGAACGCCTAAAGCTATGCGCAAGGGCCTCGCCACGGCAACCCTCCTCACAGCATGGA
TGCTTTGGAAGCACCGCAACTCATGTGTGTTCGACGGCGAACGGCCCTCCACTGCCATGC
TTTCGGCAAAGATCAGGGAGGAAGCCTCCCTTTGGGTTCGGGCTGGGGCCACCGGCCTTG
GGACGATTGTGCCGCCTACCTGGGATGTGCACTAGTCTTGTGTAGGCCTTTCTTTCCCTT
TCCTTTTTTCTTTTGAGACCCTGTAGCCTCCTTCTCGAAGGCATGTACTGTCCATATTCT
CTCCCTTTTCAATGTAAAGAAACACAAACCTTTGCGTTTTCCCGAAAAAAATAGTCTACA
CATGTCCTTTGCACTTGCATTTAATGTTCTTCCTAATTTTCCGATCACAAAAGCCGAGGT
GACATTGTGGTTGTAGAGATAGGAGAAAGCAATATATATTTGGACTGCTCCCATCACCTG
GCCGCGCCTTGCGTTATGCTCAAGCTCGATCTCACGCGGGCTTTCGACTCCATATCCTGG
CCGTTCCTCTTTGAGGTTCTGCGCCAATATGGGTTTGGGGACAGGTTCATGGAATGGCTG
ACCATTCTCTTATCTACGGCCAGCACACGAGTCATACTCAATAGCGTGCCTGCCCCCCCG
ATCTGGCACCGTCGCGGGCTGCGCCAAGGGGACTCCACATCGCCACAGTTATTTGTCCTG
GCAGTCGACGCGCTTGCCCGCCTCATGCACTGGACGCTCCAGACTGGCATCCTTCGGCGC
CTGCACCCTCGCCGCAACGTCCCGGCCATTTCTCTATATGCCGACGACGTGATGCTGTTT
TGCCATGCTGAGATGGATGAGGTGCTCGCTGTGAAGAGCATTCTGGGCATCTTCGAGACC
GCATCGGGCTTGCAGGTCAACTACGGCAAGAGCTCGGCAACGACCCTACATGGCGACGAG
GATAGCGCCGCATTGTTGGATGCGTTGGGCTGCCAGTCGGCGGACCTGCCCATCACCTAC
CTGGGCATCCCGCTCACCACCCGCCGACCCTCTGCGGCACAGATGCAGCCGCTGGTCGAC
G
