morexGenes - Barley RNA-seq Database

Contig contig_135636
Source Contig contig_135636
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_135636 (6895 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_135636

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_4898	1	3125 bp	AK364273	Available	Available	None
CDS Structure of MLOC_4898

Contig Sequence (6895 bp)

>contig_135636 6895 assembly3_WGSMorex_rbca.fasta
CGGCTGTTGGAGATGCTCTAAGTGAATCACATGCTAAATCTACTCAAAATTTTGATTTGG
GAAAATTTTGTATGAGAACATTAATTGGAAGGGGAAAATATTGTTTTGTTGAGTATTTTC
CTTGTGTAAACTTACCTTGTTTCTAAGTGATCTTCCTTTTCTGCTAGAACGGATCAGCTC
CAAAGAAGTGGCAAAATTAGAACCATTAGCCCCCCCAGTTGCTGCGTCTCCCAATGGCAT
ACGGGTGCCAATGCGGAGACCTGATGATGGTGGATCATTATGTCAAGCCAGGGTCCAGCT
TTTGGTAAACCACTTCATAGTCAAGTACCCAAAGTTGTCAACCTTTTTTCACTATGACAT
AGATATCAAGTTCGATCCAGCGTCTTCAAAGGTTTCTGGCAAGGAGCTGTCCAATGCAGA
TTTTCTTTCTGCAAAGGCTGAGCTTTTCAAGGATGACAGCTTTCGGCAGCTTTCATCAGC
TGTTGCTTATGATGGAAAGAGAAACCTATTTACTGCTGCACAACTGCCAGAAGGTTTATT
CCGTGTCAGAGTTCATTCAAAGACCTACATTGTGTCAGTAGAGTTTAAGAAGCAGCTTCC
TTTAAGCCAAATCTCAGAGTTGCCTGTGGCTAGGGAGATCTTACAGGGTCTTGATGTCAT
TGTGCGCGAGGCTTCTACCTGGCGCAAGATTATACTTGGTCATGGATTTTACTCACCAGA
CAGCAAAGTGGATATGGGGTCAGGTGTTGTGTCTATGAAAGGAACCCAGCAGACCCTTAA
ACATACTCAGCAGGGACTGGTCCTATGTGTCGACTATTCAGTTATGCCATTTCGCAAAGA
TGGACCTGTTCTGGATATTGTGCGGCAGTTTATAAAGCCCCTTCCCCTTGACTACAGGAC
AGCACTGAACAAGACTCATCGGGAAAAGTTGGTGTATGAGCTCAAAGGCCAACGTATTAC
TGTGTCCCACCGGAAGACTAAGCAGAAGTACACTATTCAAGGCTTCACTGATTTGCCAGC
CAGCCAGATCACCTTTTTAGATTCAGAATCAGGACAGACAAAGAGACTCGTTGACTATTT
TTCTCAGCAGTATGGCAAGGTGATCGAGTATCAGATGCTTCCATGCCTGGATTTGAGCAA
GAGCAGAGATAAACCAAACTATGTGCCCATTGAGCTTTGTAAGCTTGTTGAAGGACAGAG
GTATCCAATGGCAAATTTGAACAAGGACACTGAGAGAGCACTGAAAGGCAAGGCTTTAAT
CAAGGCAGCTGAGCGAAAGTGGGAGATTGAGACCGCGGTCAAAGCCGAAGATGGGCCTTG
CAGGTAACTATTTGAGTTCGAATCAATTTATATTGTTTGCAAATGTATAACCATCCGTTA
GTATTTTGGTCATAGGAAACTAAACATGTTGCAGTATTTAACTGGTACTATGATAACTTA
ATGCTCTTTTTACAAATATACCTCTACCATAATACTTAATATGGATGCTATTACATTCTT
GGTAGAGAGAGTATTTCTGAACGGAGGGAGTAGACTGTAACCATGCAATCAGTATGTACT
CGTATTTGCCAACTCATGTTCTCATTTGCTTGTTTGTGTTCCTGATATTTAAGCCCTTCT
CTGTCTTATTTCTTTTGCGAAGGCACAATACGAACTTGAGAACAGATGTTTATCTTTTTT
TATGGAAAAATGAAAAAAAAAGTTTGTACCAGGTACTAATCACCATTTTATTTCCAGGGG
AGAAATAGCTCAACAGTTTGGGATCTCTTTGGATGTAAAGATGATGGAAGTCACCGGCAG
GGTCCTTACTCCTCCCTCGCTGACACTCGGCTCCTCCAGAGGAGGTCCTGGCAATATCAG
TATCACTCCATCTAACTGCCAGTGGAACCTCATGGGGAAGAAACTGGTAGAAGGCAAAGC
ACTCCAGTGTTGGGGCATTGTCGACTTCAGTGCACGGCCATCTCACAACAAGCAGCAACC
GCTTGATGGGAACATGTTTATTAACTATATCGTCAGGAAGTGCTGTGACCTTGGCATTCA
GATGAACAAGACAGCATGTTTTGTGCATCTATCAGAAATGTCAGTGCTATCGGATCCACA
CCAACTGCACGAGGAGCTGAACAAAGCAAAGCAGGCTGCGGTGAAGAAGAACCAGAAGCT
GCAACTCCTCTTCTGCCCGATGTCTGAGCAGCATCATGGGTACAAGACACTGAAGCTGAT
CTGCGAGACGCAGCTGGGGATCCAAACCCAGTGTTTCTTGAGCCACCTCGCAAACAAAAC
CCAGGGCCAGGACCAGTACATGTCCAATCTTGCTCTCAAGATCAACGGCAAGCTCGGGGG
CATCAACACCCAGCTCCAGGACAAGCTCCCACTGGACAACGGTGTTCCTTACATGTTCAT
AGGCGCAGACGTGAACCACCCATCACCTGGGAATGGGGAGAGCCCGTCGATAGCAGCCGT
GGTTGCGTCCATGAATAGGGGCGCCACCAAGTATGTGCCTAGAATCCGTGCCCAGCCGCA
CCGCTGTGAGGTGATCAAGAACCTCGGTGAGATTGTCCAAGAGCTTATTGGTGTCTTTGA
GAAGAAGGCCGGCGTAAAGCCTCAGAGGATCATTTACTTCCGTGATGGCGTGAGTGATGG
GCAGTTCGAGATGGTCCTTAACGAGGAGCTTGCGGACATGGAGAACGTGATCAAGGTGAA
GGGCTACTCTCCAACGATTACCGTTATTGTGGCCAAGAAGCGGCACCACACGCGGCTGTT
CCCCAAGGAGCACAACGAGCCGCTGCAGACGAAGAACGGCAATGTGCTCCCTGGCACGGT
GGTGGACACCAGAATTGTTGACCCCGTGACGTACGACTTCTACCTGTGCAGCCACAACGG
GCTGATTGGGACCAGCCGGCCGACGCACTACTACAACCTGATGGACGAGCATGGCTACGG
GTCAGACGACCTGCAGAGGCTGGTGTACAACCTCTGCTTCGTGTTCGCGCGCTGCACCAA
GCCCGTGTCGCTGGCGACGCCCGTCTACTACGCCGACCTGGCGGCGTACCGCGGCAGGCT
CTACTATGAGGGCATGCTGGCGTCCCAGCCCCAGGTGCGCAGCTCGTCGTCGTCAGCCTC
CTCCACAGCGGCGGGGGCTTGTGACTTCAGCAACTTCCCGACGCTGCACGTGGATCTTCA
GGACAACATGTTCTTCATCTGATGCCGGCTTCTCACCGGTGCCGCTTAGCGTCTTGGTCC
GGTAGAACATATATACAGACTGCTTCATATGGTCTGAACTTGGTCCGGTAGAACATATAT
ACAGATTGCTTCATATGGTCTGAACTTGGTCCGGTAGAACACGTACTCCGAACTGTTTCG
TATGGTCTGAACTTTGAACTTGGAACGTATTGCTGGTTCTGTCATTGTGCGTGTGCTTCA
GGTCTGTGTCTTTTAACTATAGTTATGTGGTTGCCTGGCCTCTTTGCCAGTCTGATGATA
TGCAAAGCCACAACGGCTTGACTTAATCTTGGGTTATAGATTTTGGTGTTGAAATTCCAT
GGAAGTTCTAACAACTTTTGATTCATTTCATCATTTCATAATCTGAAAGTTGGGAATTTG
TGTTTCGTCAGGGACAAGTAGCTTCAGACTGATCTTAAAACTGTACATGTCATGAACAGA
TTGCAGCAGTTATGGCGAAGTCTCTTCTCGACCTGGAGGAACATAAGAGGACCAATCAGA
TAGCTCGGATCTGCCGTTGATTCACAAATAACAAGAACTTACACAGGAAGTAGAGGCCTG
CGCAACGAATTCAACATTTAGAAGCACCGGTTCTCTTCTCATGAATTCAGTAGTAACTAG
TCATGTCTACACAAATAATTGCCCGGAGAAAAATGACTACAAATAAGCTCTAAACATCTC
AGAAGATTACTTCTTTTCTGAACTTGACAGCGTGACCTGCGCAAGTTTACCTGTTTGTGT
ACCTGACAGAACCGAAGAACTTTCAGCAGGCCTTGAAAGCATCAGGCATAGATAGATGTA
GATAGTCCGTTGGAGCCGAGCAGCAAAAGCACCTGCAAGTCGATTAGAAATGAGAGCAGA
CCGATCGATAGTCACGCACCGATGAAGTGCAAAGAGCAACACCAAGGCCGAGCGCAATGC
TTTTTTTTTTTAGGGTTACCGAGCGCAATGCTGAATTGTCATGCACACAGAACAGGTTGA
GGTGTGAAGCAACCAACAAATAGTGCTGACGCGGTGGCATCCCAAAAGTCCAGTAAACGA
AGGCATGTGACCTCTTGAATTAATGATGGTATTTGTAACAGAAAATAATCACAGGATTAA
TTGTGTGCCTGAAGGTTTTTCATGGTTTAAAATAAACGATTTAATGATGTTGAATTAATT
TACGAATATTAGTCACTAGTATCACTCGCCCTCAACCCCTCGCCTCCCATCCCCGACGTC
ATCCCCTCCCCCCCTGGACGACTCGGGCGGCGGTGCCCATCTCTTCCCCTCGCCTCCTCA
CCACCTTCCCCCAACCTCGCGGAGTCGGGTGGGCATGGGGATCAACGGCACAGCGGCGGC
AACATCCTCATTGGGACGCGACGGACTGTTGTACACTGGATGCATGCTCGCAGCGGCGGT
GGGTCAGATCAGATCTGACCCCGGAACTGCGGCTGAGGCATGGTGGGTTTGGTCTCCCGT
CGGATCCAATCCGGCTGGTACGACCTCCATGTGCAACGGTGGTGATCGGTGGCGGTCCCG
TGCACAAGATGCTAGATGACGGGTCCTCGAGCGGATCTGGGTACAAACCGTACTCTTGGC
ACGTTGCCAAGATCGGCGATGGCGACATTTTTATGCGTCCTCACCTTCTTGAAGGCATCG
TCATGGAGAAGCTCTAGGCTGCTATCCGCTTCCTCCCGAGGACACCCTAGATCGATGGAT
CGGATGACGAGGACGCTCATGTGTCGTACCCCTCTTGGGGGCGTCATTCTTGGAGGTGTG
CATAGGCTTGAGAGACCAGTGGGGGGCATCTACAATGGGGTGACATTCCCTGTGACGAAT
CGACGTTGTGGAGTCTTAGCCGTGAGGCGTAGCGAAGTCTTGACGACGGATGCATGATGA
TGAATGTGCGTAGAGAGGAGGTGGTGTATGACGATGTGGGGGCATCGATGGCAGACCTGA
CAAGTTCGATGCGTCGGTACCTGCTCTGAAGATGGATTGATGGAAGACGATGAAGGCGAC
CTATGAGAGTGCGTCGGACCGGTTTGTGCCCCAGACCTGATATGTGGCTTGGTCGGGGCA
GTCGGCTTTAGATGTTAGGCTTTAGTGCAATGTCTGTTTGGTATTCGACTCAAACATTCG
GCACCTGTTCATCAATGGATAGGAGTAACGACAAATGTTGCTAAGACGACGGCTTTAGAC
ATATTTATATATAATTTGTAAGGTCTTTATAAATAATTAATAAAGTTGTTGCATCCATCT
TCTAGATGAAGAGGCCGGGGGTAATCCACCTTTTCGAAAAAATGTCACTAGTATGAAGGA
AAATACCAGGATACACCGTAGATGAACCCCATAAACAAATTTCACACAAAAATTAGCAAT
TCAGGAAGAAGACAAAAAATTGAAAAAATCAAACGAACTTGATCTACTGACAATTTCCAG
TTGGCTTGGGAAGGGTTCAAAGTGGCTTTCAAGACATCAAGATTGATCAAGGCGTCAAGA
TAAGGGTTGACCAAGATAAAGCTCAAAAATCGAATTCTATATGGCTAACACAAGGCGCAA
ATGAGGTATCACATGGGATCTTGTGGTATGGTAGAACTAACCCATACTATGTGCTTTCCA
TTTAGGTGACTCGTGGGCTAGCAACAAAAAAAAAGTAGCCCATGTAAGGATGACATCAAG
TGAAGATGATTATGTGATGGACATATGAAGATGTATTACAAGGAGAGGCCCCCCATAGTA
TACTAGAGAGATGTTTGAAGAACTTCACCAAGCTTTTGAGAGACATTATATTGATGAGTT
GGCATATGCTTGAATCCTGAAGGTCCATCTATGAATTATTCTTACATGCAAAGAAGATAC
ATGATGCAATGCTTCACACGTGGCTTATAAGGGAGCTACCTCAAGTCTTCACCAAGTGAC
GTGACCAATATTATATTTCCAAATTGAGCCAAGCGTTCACATCAACATCAAGTTCAAGTG
TAATGCTCAAGGCAAATGTATAAACTAGTTAGGTTTTCCTAGTTTCGTCGGTGTCATGGT
TCTCGTGGTTCTCGGTGAGAGACCCCATTATAGGTTTGATAGTCGTACTATCAAGGCGGG
CTTTTGGGCGGTAGGTTGTCCACGTCGTGCGTAGAGTGTTGAAACCTTTGAATTATTTGC
ATCCTAGGTTTTATTTTATCGTGGGAAGTTCTTCATGTGAGGACCTTGAGATTTTCAATA
GCTTCAGAACGGGCCCAAGATCATCGAAATCGGAGTTCGTATGAGAAAAACATGCATATT
TCAATGTTGTTATCCACACTTTTCTGTGTAGCCTAAAAGTTCTAGGGATACCTCCACGGG
GACATTCCGAGAAGGCTAGACTCCAGAGTAACCTCTGGATATGTCCATAAACTTCTGGGT
CAGTCGGAAGTTGGTTCCAAAACCTCCGAGACGAACCTTCGAGAGGCGCTGGGAGCCCCA
ATGGGCAGATTTGGTTGACCCCTATTAAAGGGGCCTTCTTCCTCATCGGTTGAGGGGCTT
TTAGATTTGAGATTTTCCCGTTCCTTTGAGCTCAAGCCTGGAAACTCCAATCTATTTGGG
GGAAACTATCCCATGGATCTAGGATTTATGTGTTGACCTCCTCCACTGTTCCTCTCCTCT
CCCATCCCTCCATAGCATTAGTTGCTTCGGGTGAGAGAGAGCGAGAGAGAGAGAG