Contig Data
morexGenes
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Map Locations of contig_135615 (7108 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_135615

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_4891 1 1288 bp MLOC_4891.1 Available Available None
MLOC_4890 1 692 bp AK253120.1 Available Available None
MLOC_4889 1 596 bp MLOC_4889.1 Available Available None





CDS Structure of MLOC_4891






CDS Structure of MLOC_4890






CDS Structure of MLOC_4889






Contig Sequence (7108 bp)

>contig_135615 7108 assembly3_WGSMorex_rbca.fasta
ATCTCAACCTTCCACTTGGGGTATCCAACGAGGGACCAGAAGTATATACATCATCTCGTC
ATCACCAGCTCACCACCGACGCCCAGGTGCGGCCATACGAGTGTGCGGCGCAAGGATAAG
CTCACGGGAACAGGGAGCAAGCACCAATGCGTGACACTCGTGAGATTGTGGTCGATCTTG
ACCAGTCATTGATCCAGTGCACACTAGGTGCTCGGCAATGCAAACGGTATGAGGAAAATG
AGTGTGGAGCTGAAACTTGGAGGGGGGCTTCTCATTGCTTCTGGAGGCTGTCTAAGTTAA
TTCAGAATTTTTGGAGGTGAAAAAGATGGGTTTTCATCAAAAAGATCAAATTTGGTCCAA
ATTTTAGTCAAACGGGTTTTCAAAAGTTTAAACGGCAAAACAAAAAGTTTTTGAAGAAAT
AGGTTGAAGGTACCTAGGGCTATCATGGATAACTTACTTGGGGTCAGAAGCGAAGGATAA
CTATAGGTTTCTTTGCAATTTTTTTGGTGTTCTAAAATGATTACAAGAAATTCCTAGAGT
CATTTAAAAATAGATAGTAATAATACACAAACCTAAAACTTTGTGAAACTGTTTTAGATG
ATGTCCTTAGGACAGAAGATGATCATTGGGATGAAAACATAGAATTTGGGAGAGGAGAGA
AATGAGTGAGAATTTCTAGGGGGGGGGGGGATTGCATAAACCAATTTGTGATTTTCAAAT
AAAATAAAAGATGAAATTCTCACAATAAGATTTCTCTCATGTAAGAACCAGGTAGAAGCT
CTTGTCAAAAGTTATTTCAAGGAACCTCATAAGAATTTTTTTCTCAAGAATAAAGTTTCC
AAAAGAGGTTTTTAATAAAAATTCCCATATCTCTCTTTAAAAAAATAAAACTTCAAAATT
CTAAATAAAAATTTTGTGGGTGTTAGAACATACGGATAGTTTTAGGTTGATAACTGAAGT
AGCTAAATATGCATCATATATGATAAGAATCATATGTTCAAAAAATACAGCCGCTTAAGA
ATTTAATTATAGATTTATTCTGACATACTCCATTTGTCAAAAAAAAACTTGTCTTAAGAT
TGTTTCTCAAATAGAGATATCTAGCACTAATTTGTTGTTAGATACATTAATTTAAGGGAC
AAGTTTTTTCGAACAAAAGGAGTATAATGCATCTCTGAAAAGTGAGACGGGGGAGTATAA
GTTTCTTTTCTTTTTTCGAGACAAAATACTCCCTCCGTCACGGTTTAGGAGGTGTACTTA
GAAATTCTCTGGAACGCAGGTGGTTATTGATGGCTATGAAATGGGTTAAAATAACAATCA
TACTACACATGCATATATAAGTAGTACTACACATGTATATATAAGTAGTACAACGAAGTA
CTCCCTTTGTTCGTAAATATAAAACCTTATAGAGATTGCACTATGAACTTTATACGGATA
TATATTTAGACATATTTTAAAGTATAGATTCACTCATGTAGTCTCTAAGTAAAATCTCTA
AGAGGTTTTATATTTAAGAACGGATGGAGTACTAATTAGCTGTTAAAAGTAAATGTCATA
CGTCTTAAAACTTTGGTTATTATGAAAATGCACGTAAATTTAACTGTGACGGGTAGAAAC
TATGTGAGTATAAGCCGTGATGGAAGGCCAATCATGTGCCGGGCCCAGCCCAAAAAAGCA
ACGCGACGCGATCTCCGATGCGGAAAAGATGCGACGCGGAGGAGGTGGATCCGGACCCAC
TCGGAACTGCGTACCACCAACGCGACCCCTGCTGCCGCAAACAACACGAGCGCCGGCGGG
CCCCGCTGCGCCCACTCAAGCGCCACAAACGCCAAAGCCGGAAGAAAGAAAGAGAGCGCC
TCGAAGCCCGCGCGCGCCGTCCACCGCTCCCTTTACTCGCCTCACGCTGCCCCACGGGCC
CCGCGGCTTTCCGCCATGTGGGGCCCCGCCCCCGTCCCGTACCTTTGGCTGCGCTGTGGC
CCCACGCCTATCCCGACGCTGTTGCCAAACGCGGAGAGTAACTTCCTCGGTGGTAAATTG
TTTATACTTTTTTTTGTGGGGACACAGCAATAACTTTGGTTGGACGAATTAGTTAGGCCT
GTTTCCGTAATTCTGACGCGTTTTTCTTTCGGTAATATTCTGTTTAAATTGGGTAGGAAT
ATATGACAGGCCGATTATAGATCAGCCAATGGAACGGGATAAGTTCTATACTAGTACCTC
TCTTCTTTTCTAGCGTCTTTGGTCAAAAAGGGTCACGAATTTCTCACCTAAAAAAAAAGG
ACATGTAGCATCCTGTGCATCTCATTTTAATTCTTGTTGACAAATCTGCCTATAATGAGT
TTTTGGTATGGCCTACTAGTAGTGAGGATGGAATATATGAAATGCTATTGGATGGAATAA
ATTCCGTGCTGTTGGGCACCGCCTGGAAAGAGAGGGGGAAACTTCCTTGCCACCCAAGAG
AAGAGAATATAGTGGAGTATAATCCAAGTGCCAACGGAATACATATCTGGATCAATCAAT
CACATCGCATATCTTAATTTTGCAAAGCATCTCAGATCCACGCGAGATCTCACTCTCAAT
ACCGTAGATATGGCAAAATTAGTAAGTACTAACAACGTAATCATAAAGACAATTACAGTG
CAAAACAAACCCAAAACAGGTCAGGATTAAGTCGGGGAACATGATAGCAAACCACGTTCC
ATCACGTGGATCAATCAACAAAGTACCGAGCCTTTTTCTCAGTAGTACCAAAGCTAATTC
ACTCGCGGTGGCACCAGTTCAGATTTTGGGTCCAGAAAGTTCTGCGGCTAATTTAATTTA
AGGAAAATGGCACGGGAATCGAGTGGATAACACTACGAAAAGCGGCTCGTACATTTGGAA
GACAAACCATGAAAGCGACAAACAGATGCAGAATCCAAGGAGCACGGATTACGGATAATT
TATAGCGGAGTTCATCTCATTCATTCAAACGGTAACAGACAAGGGAAGATAACCATGGCG
GCCGGACGCAGATCCAGCAGCCTAAAGAGTCCACCTAAAACCCTCCTAAACCAACCACGG
AGATCTCATCGGACGGACAGGGGCAAGACACGACACGACTTCTTATTTAGACCGACGACA
CGACAGGGGACACATGGCACGACGACGACGACGACGGGCGAGCGCGACGGGCGGACGGAC
CTAGAGCTGGCCGCAGTCGGCGATGACGACCTGCTTGGAGCAGGTGCCGCTGCGGGAGCC
CACCTTCTCGATGTTCTTGACGACGTCCATGCCCTCGACGACCTCGCCGAAGACCACGTG
CTTGCCGTCGAGCCAATTGCAGGGGACGGTGCAGATGAAGAACTGGGAGCCGTTGGTGTT
GGGCCCGGCGTTGGCCATGGAGAGGATCCCTGGCTTGGTGTGCTTGTGGATGAACTTCTC
GTCGGCGAACTTCTCGCCGTAGATGGACTCGCCGCCGGTGCCGTTGCCCCTGGTGAAGTC
GCCGCCCTGGCACATGAAGTCGGGGATGACGCGGTGGAACGAGCTGCCCTTGTAGTGCAG
TGGCTTGCCGCTCTTGCCGACGCCCTTCTCGCCGGTGCAGAGCGCGCGGAAGTTCTCCAC
CGTCCTCGGCACCGCGTCCTTGTACAGCTCCATCACGATGCGGCCGGCCGGGGCGCCGCC
CACCGTCATGTCGAAGAACACCTTCGGGTTGGCCATCTCGCTCGCCGGGATCGGGATCGG
GATCGGGGCTAGGGTTTTGGGGGAGATTGGGAATTCGGGTGCGCGGATTGGGATTTCCTC
TGGCTTCGGGCTCTGTGATCTGGCAAGGGATGACCGGGCCGTGGGTTAAATAGGCGGCGA
GGGACGAAGCGGGGGCGGCGCCGGCCGTCCGATCTGGACGCGTGGCTGCATCGGGGAGAG
CGGGGGCTAACCGGGGAGGTTGGGCGGTGCGGTTGCGGGAACCGTGGTTAGGCCTAGGGT
TGGGTTCCCCGGTGGACGCGAGCGGCACGTGACCCATTCCAACGCAAGACTGTATGACAT
GTGGGGCCACAGGATGCCTGCACTGGAGGGCGGCCTGCAGGGGTCCGTCGGTGTGGGGAC
CTGATACGTGGGCCCGAGGCGTCATTGGGTGTGGGTGGAAGCGGCGTCCGTGCGAGGTTT
CATTGGATCTTTGTGGTGGTAACTGGGGTTGCGACCGTGGTTACCCGGGGGTGGTTGGGT
CGGGACTAGGGTTGGGTTGGGGTATACCTGATTTTGGACTGCGCGCGGTCCACCAGGACC
GGGTGGAGCGGCGCGCGTGGGATCTGGTGGGAGGGTCTATGGACCTGGTGCACGGGAGGC
TGTGGTGGGGACGGGCGGAGGGGATATGCCGCGGTGCGAGTGGGCGATATTCTGTTGTGG
CTTGGATCGCACGCGGACTGCATGTGCAACTGGCCCGGGACGATTCCTGCCGGCCCAGTC
CGCGCGGCGGAGCGCCAACGGGCGGCTCATCGGGGCCGTTCAGCGTGGGTTTGAACGGTC
GGGATCCGCGTGATCAGGGCGCCTACAGGGAACGGCAGGGTCTAGAAGCTTCCTTCTCAT
CTCACCTAGGGCCTGCTTGAACTGAAATACGTGCCGCCTTCTCTTTTTTCTTTGGGAGGT
ATAAAAATATTACCTAGACAGAAATGTAGAGTTGCAGTTTTTAGGCAATTTTTTTAGGAG
AGAAAAAGATGTATGTGGATTAATTATAATATATTCCTACTTTTCTAGCTGATTATATTC
AGTTCCTGTAAACCCCCCTTTTGAGTAATATAAGTTCTTGATTCGCAAAAAAAAGGTAAA
GAATTTTTTTATTTGAATCCTTCAGATCACGGACTTATTCATGGAGAAATACCCCATCCT
TTTTGTTTACGGGGAAGTACAAAATTTGTTATATTTGTTTACGGGGAAGTACAAAATTTA
AACTATGTCGTAGCAATGAAGAATATTAAAAACTTCCAAGGCACCTTAGTCTCTTTCTCA
CCAAATCATATTACCTACCCTTGCATTGCAAAATACTTGAAATAGTAGTATATTTGACTC
AAAGTTGAGCTTCTCTATTTTGACAAGGCCAATAAAAAATATGCTAGTATCTTTTTTTTG
CGGAAGTAGTATCTACAATATCAAATGATAGTAATGAAGCCAATTTGGTGTTGTAGAGGT
TGACCGATTTTTGTACACCTCTCTCGTGAACAGTAACCACGGGAGGCGAAGGGGAAGGTG
CCTAGATCTCTTGTTGTGCCAAAGGACGGATCAGCAGCAACTCCCTCTTTGGTCGTAGTT
GCGAAGGCGGGGGAGGCGGGGAGTGGAGGGACCTCTGATTTGTGTTGAAGGCATGTAGAT
AGTTGGGTCAGGCTCCCCGACAGCGCAGGCAAGGTGGTGGTGGTGGCGGCGGTGTGGAAT
AATGGTGATGGAGCTTGTTCATCGTCTCAACAAGGTCACATGTGGCGACATCGACGAGCT
TCTTGCGTTGTTTGGTCCTCGATTTGTTGATTCGATGGCTCATGTTCTCCATGTGCAGTC
TTCGCAACGGAGAGACAGTCCGTGAGGAGAGATTTTGCCCCTCAATCCCGTCTTTTTCCA
TGGCAAGTTGACTCCTTATCTTGTTGAGTGCTGGTGGTGTTGCGGTGAGGAGTTGGCGGC
TATTACCGATGGTTTTCACCACCTTACATGGTCTTCAGAGTTGTGATGACATCGACGTGG
TTCCTTCGTCTTCATCCATCATGGTGGTCCTCTTGGGCTGACATTGAACACTTCTAGTTT
GTGCTCTATCAAGTTGCAGGTTCCAATTTCACACCGTCTCCAGATGAGAGAGACAACAAT
AATAGCAACTGCGCATCGGCAACCCGCGATGGACGGAGGAGTCGGATGGTTTTAGAGGGA
CTTGTTTTCTATTTTATTGTATATGTTGGGGTGTTTTATATCACCGCTCGGTTTGAATAT
AATTTTGAGGTCTTTTTCATCAAAAGCACTTAAAGTCAACCAATTTCAATATCCATGCCA
CCCTACACACTCTTCCAAGCACTAGTTGCAGTTTTGGTATTGATATTCAATCCTTCATTT
TATTTTTATATACAGACTCCTTTGTTCCAAACTGGCCCCAAAAGACCGCTTAAAGGGACT
TCCTCCAAATTTGACATGTGAAAATCCAATTAACCCAACGTCGGCTTTTGATTTCTATCC
CGCCCCCTAGCCACTCGATTTTGACATGGATACATTTGTTTAACATCGGAAGGGCCTCTA
AGAACCAGACATCCATTGGATAAGCATGCATACACATTTTATAACAGGATCCAAAGAAAA
CAAAAAATACACGCTAGTCCCTAACACATGCAAAGAATAGCACAAACAAAGAAAAAAGAT
AATATATTTAGGTCTGAAGCTACTCCCAAATGGGTTCCATCTCGTTGCCGACATTGATGT
GGCCACTTGGGCACCACACAATGGACTCCTTCCAGAAGCAAAGTTGCCTTCCTCTGACAT
CATGGCCCTGAGGAAATACATTGGGTCGCCTTTTGGCCAGAAAGTATGATGGATCACTCG
AGGAGTCCGACTATCAACCACATTGGGTGATGTAGGTCTTCTAGAACCATCATCATCATA
TAGGCTCTTGAACTCCATCAACCCCATCTAACACTCCATATCTCATTCGTTCCATCTTTA
TCCCCACAATGAAGTGACAACCGAGGATGAGTTGGAAGCCCTTTGTTGGTTTAGGGCAGG
ACAGATATCCCATCGAAAGCTTGGATCGGACAAGATCCCACCCACACAATTGGGGCCAAG
CTGGGATCTTCCACCAACTCACTGTTCGTCACTACCATGACCAACAGAGATGGCGTGGAT
CATCGAAAAGGCTCGTGAAGGAGAAGCTACACACTTATTTAGGGAGTAGATGTCGGATCA
GTAGCCCTCACATCGCCTCCACAGTGGATGGTAGTATGAAGACCACACGAATGGCCAACA
TTTCTTGCGTGTGAGCAGCATCAAACAACCCATCAACAACATAGTGTAGTGCCCCAAGTG
TAACCTTCCCTATTTGGAACCTNNNNNNNNNNNNNNNNCCTTGTCAGGGATATGATGATA
TCATTTGTGCCATGACTTCATGTGAGGT