Contig Data
morexGenes
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Map Locations of contig_135575 (3105 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_135575

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_4849 2 1378 bp MLOC_4849.1 Available Available LOC_Os01g52240.1, FRAME:+1, EVALUE:6e-170, 13101.m05463 protein chlorophyll A-B binding protein, putative, expressed





CDS Structure of MLOC_4849






Contig Sequence (3105 bp)

>contig_135575 3105 assembly3_WGSMorex_rbca.fasta
CTCGCGCGACCAGATCTGACGGTCAGCGGGCCCTAATCTGACGGCTGCTGCGCGACCGGC
GCGAGCCCTCGGGCCGCCGCGCGGGCGCCTAGCACTACCCTAAAAATAATCATCGTATAT
GGCCTGAAACTGCCAACACTTTGTTGACCACACTTGTCCTACCTATTTCATTACAGACAA
ATTTACATCTCCTTGCATGCAGACCGTGAGCTGATCTGAGAATCAACATGTGATCCATCG
TCCAATCACACGACTCCATTCTCCAACAAAATCCTAGACCTAGCCACAACCTATCTCCTT
TCTTCGGCTCTCACGTTGCCACGTCCTGAGGGATGACGAGATCTCCACTGCACCAATTGC
ATCGAAGATTAAGATTTTATCTGTCTATCTCTATTTTGTCGGCACACACACACACAGAGA
GACCCGAGCTCAATCCCGTATGTTAGCCCCAATACCTTAAATAGCTACATCCTCCACTCG
TCTCAAACCATCTCCACACTCACTCTTCAGTGTTCACTATTTGGAGAACACACGACACAC
CTCTAGCCTTAGGAGCGCAATGGCGACTACCACCATGTCCCTCTCCTCGGCCTTCGCCGG
CAAGTCGGTGAAGAACGTGGCTTCCTCAGCTCTCTTTGGTGAGGCCCGCGTCACTATGCG
GAAGACCGCTGCAAAGGCCAAGCAAGTTTCATCGGGCAGCCCATGGTACGGTGCCGACCG
TGTGCTCTACCTCGGTCCGCTTTCCGGGGAGCCCCCGAGCTACTTGACCGGTGAGTTCCC
TGGCGACTACGGTTGGGACACCGCCGGGCTCTCGGCTGACCCCGAGACCTTTGCAAAGAA
CCGGGAGCTTGAGGTGATCCACTGCAGGTGGGCCATGCTCGGTGCGCTCGGATGCGTCTT
CCCCGAGCTTCTTGCGCGCAATGGAGTCAAGTTCGGTGAGGCTGTATGGTTCAAGGCAGG
CTCCCAAATCTTCAGCGAGGGTGGCCTCGACTACCTCGGCAACCCTAGCCTCGTGCATGC
ACAAAGCATCCTTGCTATCTGGGCATGTCAAGTCGTGCTCATGGGCGCCGTTGAAGGGTA
CCGCATTGCTGGTGGCCCACTCGGTGAGGTGGTTGATCCACTCTACCCTGGCGGCAGCTT
CGACCCGCTCGGCCTAGCCGATGACCCAGAGGCATTCGCGGAGCTCAAGGTAAAAGAGGT
CAAGAACGGGCGCCTTGCCATGTTCTCCATGTTTGGCTTCTTCGTGCAGGCTATTGTCAC
CGGCAAGGGCCCCCTCGAGAACCTTGCTGACCATCTCGCCGATCCTGTCAACAACAACGC
ATGGGCGTTTGCCACTAACTTTGTTCCCGGCAAGTGAGGCGTTGGCCCTAGTTAGCTGCG
AGTTGTAGCCATTAAGGCGACTACACTGAACTGCACCCGTATTGTGTGGTTTTGTAACAT
CATAGTGTAAATTACAAGGATCTTTCAGGAAATTGCTTGATCTGCCCTCTTTCTTCATGT
CCTAGATCTAGCCTACATGTTGTTCCATGAGAAATGAGAACGATTAATACTTGAGCTATT
TGTTGTTCCATGAGAAATTGAGAATGATAATTACTTGGGCGTTGTTTAACGAGAAGTTGC
TCTTGGTGATGGCAACATATGCTCTACTAAGAGGGTAGAGCCGTAGTCGCATAAATAGGT
GGTCCATCTTGACCATGATGTCTGTTCGTTTGTACGTATGGTGATCTCCCAAGCATTGTA
CAACGAGTCATTCTGTTTTGGTTTTGGTGCATTCACATGCAATTTTTCTGAAAGGTCGAC
AAAAAACAGAGCAAGATAGAGACTTGAAGTGTGCAAGGGCAATGGAACCCTGTAAATATG
GTGAAAGCGTTTCACTCTGATGTTGTCAATGGCTCGACGATCAATTTCCTCATCAATTGG
TCAACTGTGCGTCGTCCCAAAAAACTCGGTTTCCATGTCTTTGCTTCGGCCCTGCTATGC
TAGCGCCGACGCCATGGAAGGTCCACTCACCCTCTCCTCCCTCTGTCCGGTTCTAATTTT
CTAAGTCTTGTGTCATGCAAATCCACCAAATTGGATGGCTACTCTTCCTATAAAACCTGA
ACTGAGTTCTAATTTATTTAAACAGTTCTACACTATATGTATATGTTGCTCTGTTTACTA
TCTGTAATCCAAAGCTCTATGATGAGATTTGGTGCGGTTAGTAGGAACTTCACAATAGCA
TCCATTCTTTCCGACCCCTTTGGATGGTGGTATTAGATTAGAAGATGTTGGGTGAATGAG
GCTCATGAAAGATTTTCGACTGAGTGTGTTTACTCTTCACTTTTTTCATAAACCTTAAAC
ACATGAAAGAAATAGAAGAAAATGACGTGCAAATGCTCAGGTGTGAAAAACATGTAATCT
TCTCTCTCTCCCTCTCTCCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTCT
CTCTCTCTCTCTCTCCAGAGAGAGCGGTACTACCGCTCAGGCAGAGGGCATCTAATCGGA
GTGGATGGTAGGGGCTGGTAGTACGACCGGAGCGGTATTATCACTGCCAGGAGTGGTACT
ACTGCTCATAAGAGGTAGTACCACCTCCTACATCTGCTCGGGTATCAGGTGCGGTCCCAA
CCGAGAAGAACCAAGAATTTCCGGCATGGCAGTAACAGGATGTACTACCGTCCAGTACTA
CCGCAAAGACCGACACCAAAAGTGTCGAAACCCATGGACAGCAGTACTAGCCAACGGTAC
AAGCTGGGCCACTACAGCCCTCGAGCGGTACTATCTCCGGCCCGGGCGGTACTACCGATG
ATAAGAGGTAGACCACACGCAACAGTTGAAAAGCATGAATACCAGAACTGCCATATCTCC
GAATTGAGCAAAGTCAAGCTTGTTGAATTCAGGACGACAAGAGATATCCAACAGCGACTG
GTTATCTTAAGAAGATGCGGTATATAAATGCCAATGATATAGAGATGTGAAAACCTCTAT
GAGTGAAGAACCGACAAAAACTCCAACANNNNNNNNNNCATAGAAGATGCATATGGAGTC
CGTTTTCGATGAACTCGAGCTTGTCATAAAGATGATCATAAGCTC