morexGenes - Barley RNA-seq Database

Contig contig_135566
Source Contig contig_135566
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_135566 (6467 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_135566

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_4844	1	324 bp	MLOC_4844.1	Available	Available	None
MLOC_4843	1	2315 bp	MLOC_4843.1	Available	Available	LOC_Os02g47180.2, FRAME:+2, EVALUE:0.0, 13102.m05308 protein WD repeat-containing protein, putative, expressed
CDS Structure of MLOC_4844

CDS Structure of MLOC_4843

Contig Sequence (6467 bp)

>contig_135566 6467 assembly3_WGSMorex_rbca.fasta
CCCCACACACACACACCCCAAAAAAACGGAGGGTAGATGAGAATCATCAATGCACTAAAA
GTGTGTAAACTTTCTTCGTACCATCATATGATTTGCAACCACAGACGTCGTGGCGGAATA
CTATGATATATTTAATTGATACCAAATTAACCTAGCCATTTTTTTCGGTAAACAATAAAA
CCTTGACTACTAAGATTTAGCTACTTTTTTTTTTTAGAAAACACTAAAAATATCTAAAAC
TTGACCACTAAGTTTTAGCTAGTTTCTAATTTTGAAGTGACGAAAGCTATTTTTAGAAAC
CCTAAATCTTGGGCCGCTCAAAAAATCGGGCCGCGCAGGAAGGAGGAAGGCCCATAGAGC
CCAAGCACCAACCCTAATACGGTATACCGTGGGCAGCAACGGCTCTAATCTCTGTCCCGT
GGGGACTAGCCGTTGCGTCCGCCCCCGCCGCCGATTCCCTACAAATACAGCTCGCAGTCA
AATCCCTACACCTCACAAGTCACCGAGCAATCCGTGGCTTTCTCCTCCCTCCCTCCCCCC
CCTCTCGTGCTCGCCGCCGCCGCCTCTCGTTCTAGCTCTCGAAAGATCCCCGTTTCTCGT
CGGCGTGCTGATTTGATTGTTCTTCCTGTTGCGATTTTCTGCTGTTTGTTTGTTTGTTTG
TTTCTTGTTTCTTCTAACCATGGACGCAGGCTCCCACTCGATCTCCTCCAGCAAGAGCAG
CGCCGCCGCCGTGCAGCGCCCGCCGCTCCAGGAGGCCGGCTCCCGCCCCTACATGCCACC
GCTCAGCACCACCTCGCGCAACCCGTCGGCCAAGTGCTACGTAAGTTGCTTGCTCCGGCT
CGCAGATTCCGTGTGCGCACGAGCTGTTCGATGGAATGCCTAACATGGCGTTCTTCCTCT
TCTCTCTGTGTGTGTGTCTCTGCAGGGAGACAGGTTCATCCCGGACCGGTCAGCGATGGA
CATGGACATGGCGCACTACCTGCTCACGGAGACCAAGAAGGACAAGGAGAACGCGGCGGC
CATCGCGGCGTCCCCGTCCAAGGAGGCCTACCGGAGGCTTCTCGCGGAGAAGCTGCTCAA
CAACCGGACGCGGATCCTCGCCTTCAGGAACAAGCCGCCGGAGCCGGAGAACGTGTTTGC
TGCCGACACGGTTTCTTCTCACCTACAGGCCAAGCCGGCCAAGCACAGGCGCTACATTCC
CCAGGTATGCATGCGCACGCTTGCGCTTCTACTAATGCTTAGAAGCTACAGGTGTAGTAG
CGTTTATATGGTGGTGGTTGCTGATGTGATGTCGATTGACAATTGCAGTCTGCCGAGAGG
ACTCTGGATGCACCGGACCTCGTCGACGACTACTACCTCAACCTGATGGACTGGGGGAGC
AGCAACGTGTTGTCCATTGCGCTGAGCGACACCATGTACTTGTGGGACGCCTCCAGTGGA
TCAACATCTGAGCTTGTGACAGTCGAGGAGGACAACGGCCCCATCACCAGCGTCAGCTGG
GCTCCTGATGGCCGCCATCTTGCTATTGGACTCAACTCGTCTGACATTCAGCTCTGGGAC
ACCAGCTCCAACCGCCTGGTTAGTATACATACACTGTCCAGCATCAGAAAATGTTATTTG
TGTGTCCTAACGTGCTTGATCATATGCTGAATTACTACATTCTTCTTTGTATGCAGTTGA
GAACACTGAAAGGTGTGCATGAGTCAAGGGTCGGTTCGCTGGCATGGAACAACAACGTCC
TGACGACTGGCGGCATGGACGGTAGGATCGTGAACAACGACGTAAGGATCAGGGACCATG
CCGTGCAGATGTACCAGGGGCACAGCCAGGAGGTGTGCGGGCTCAAGTGGTCTGGCTCAG
GGCAGCAACTGGCGAGCGGTGGCAACGACAACCTTTTGCACATTTGGGACGTGTCGATGG
CATCCTCCATGCCGTCTGCAGGCCGCAACCAGTGGCTGCACCGGCTTGAGGACCACACGG
CCGCTGTGAAGGCGCTCGCGTGGTGCCCATTCCAGAGCAACCTGCTGGCAACTGGTGGTG
GCGGTAGCGACCGCTGCATCAAGTTCTGGAACACGCACACCGGTGCATGCCTGAACTCTG
TCGATACTGGATCACAGGTGTGCTCCCTTCTGTGGAACAAGAATGAGAGAGAGCTGCTGA
GTTCGCACGGATTCACGCAGAACCAGCTCACATTGTGGAAGTACCCTTCCATGGTCAAGA
TGGCTGAACTCACTGGCCATACCTCCCGTGTTCTTTTCATGGCACAGGTACATCTTTCTC
GCCATTTTTATTACAGATATGGTCCATTGCCTGATCATTTGATCATTCGACATGTTTTTT
GTCCATTGCCTGATCATCTTGTGATGCTGTGAAATTGCAGAGTCCTGATGGTTGCACGGT
AGCATCTGCTGCTGCAGACGAGACCCTCCGCTTCTGGAACGTGTTTGGCACTCCTGAGGT
AGCCAAGCCTGCACCAAAGGCTTCACACTCCGGCATGTTCAGCAGCAGCTTCGCCCATAT
CCGATAAGACGAACAATGCGTTCTCTTGAACTCATGGCTTCACACTCCGGCATGTTCAGC
AGCAGCTTTGCCCATACGATAAGACGAACAATGCCAACAATCTCTTGAACTCATGGTCCT
ATGGGCAGCTGTGTGTGTACAGAAAATAGGCTAAATACCTGGGTATATACTGCTGATGTA
CTGACTTTACTGTGGATAAGGAAATATACGGATGGAGCCGCCGCAATTCGGCTCCCGGGG
ACGTAGGCACATTGCCGAACCTCGTTAACAAACGCTTGCGTCTTTTGTTGGCTGTGATTG
CTACTTTGTGTGCATTTATTTTTCGAATTCGCACTTGTGCCTAGCTAGTCACGTTCTACA
GCTGTATCCGAGAAACGTTATTCAGCTTTTGCTGAGCAGATGGCCTGAAACCCTGAAGGA
GCATCTCTCCTGTGCCAAATCTTGGTCTGGAAACTGAACCTGAATCTTATTCTTTCTACC
TTTCAGAAGGCTACAGATCCGATTTCTCTTCATCTTCCCCCCTTCGTGACCGAGGAAGTA
TGTTCATTTTCTGTGCTGAATCTTGTATTTTCTTTCTTTTTTGCCGGGAAAGGGAGTTCT
ATTCCATGATGAGAGACAAAGATCGGACCTAAGCGGCTATAATTTGTCAAACAGTCAGCA
ACTTTATGATCCCTAGTTAATTTCTGGGGAAAATAAACTCCATGGTCAAGAAACTCCTTA
ATTTCAGCCTCTGAATCTTATTCTTTCTGGCTTTCGGAAGGCCACAGATCCGATTTCTCT
TCATCTTTGCGGCCAAACCGCAGCACAAGTACTCCCCCCCTTCGTGACCGAGGAAGTATG
TTTCGTTGTTTTGTCATTCCACCGCAGTTCTGAATCCATTGCGGAATCGAACTCACGATC
ACCGGCATTTTGCTATGGCAAGTTAGTCTACTGTTAGATTTCAGTCTATTTTCTTTTTCT
TCCGACAGCTACAACAGACATTTTGCCATTGGTTAATTCGAATATAAAACAAGTTTTGTA
ACCTTGCTTTAGAGAGAAACAACATTAATCATAGAGAGTGGTGGTGGAGAGCAGCCGGGA
GGAGAAGATGACCGTGATTCGTCAAGACACACACACACACACATGCAAGGAACAGCTCTT
CTTTGTCGCGTTGCGCACCGCACACCGTCCGGCTCGGCTGGCCTCGCCGGTTCGCCACGA
CGGCCGTACCGGCAGGTGACCGGCGAGCCAGGCGGCGGTGGAGAGCACGAGAGATTCCGT
GTCCCCTTCCTTCCTCTCCGCCGGTTCCCGCGGCCGCACAGCTCACCCTCTGACCTGCTG
CTGCACCGCCACCCAACAACCAGACCCCTCGGATCCCCCTCCCCCTCCCCCTCCTCCTCC
GCCATGTGACCTTTTAAACAAGTCGTGCCACGGACCACGCAGCATACGCTCATGTCATGT
GGAGTGGGCGGCTGGCCCTTGGCCACGGCCACCACGACGACGACCACCCTCTTCGCCAGA
GCCTCCATCTGCATGCACTGCACTGCATGCGCCAGACATGCCGGCCGGACGGAGGGAGGT
TTTGATTCGGCTCAACGAGAAAATATTTTGGTGTTTGTTCGTGACGGATCTTGGTCCCAA
CAAGAGCTACAAAACTAACATGGAATGATGCTCTCTTTTTTCTTTTGAACTCCATGCATG
CTGCTAATCTGCTCATGGACCATACCACCGAAAATTTGGTGCTACTAGCTGATGTCTGTT
GCTAGTATTATAGTAGTAGCTGATGGACTGTATGCGTGCTCGATTGCAGGGAATATGGTG
GAAGTAGGTGCTTAACGGTGGGCGTTACGAGCTCCATCGGAACAGATGATGACTGTTTGC
CGGCCGGTCTGCCTTTAAGCATACGATTCTAGTTCCAAAACCGAAACCTAAGTATGCGAT
GCGATTCTCTGGAGAAGTTTACTTCAAGGAGCATGTAAAGCGGGAAGGGAATCAGAACAA
AGACAAAACCAGACGTGGGCTCCTCAAATCCATATGCTCCACCGGGAATCTTATGCTGAC
CAAACGCCGGAAGCATTTTATACCATTATCCTTTTTTTACCCCATCCTAGCTTTTTTGTT
TAAACACAGTAGAAACGCAAGCATTCATATAAATGCACCTACGTTCATCCGTACGAACAC
ATACACGGTCTATCCGTATGAGCATTACCGAAAGACTAAGCCAGTATATCATTTTGAGAT
TTATGAAGTCATCATAGGCGTCTCGTCGTTAACGAAAATGTCTCCTTCCATTACGCATCA
CCGGAAATCCTAAAATAAATTCAAAAATAATACGAGCATCAGAACTTGAACCCTCATGGA
CTGAGGATGTCACTGTCCATCGATCCATCGAACCACAGGTTGGTTCATTGCTCGGCCCTA
GCTGCTTCTATACATTTTATTTACACCTACTGCCCCGGGTTATGTGTGAGTATCACGTGT
TACGAGAGCTAAGGTGCTCCCGCGATAAGAGCTCCCACGAGCCGTTGGATATGAGATCCA
ACAATCACGACTTGTGAGCGGAGAGTCCCTGCAACTTTATGAAAAATATTCCTTCGATAA
ACTGTATTTATGCACAAATCCACAAGCTAGGCATGTGAACCCTTGCATCTTAGATTCGAC
CGCTCATGGAGCACATATCACGGGAGCACCTAACCTCCGTATCATCTGATATTTTTCCGT
TATGAGATTATTGAAGATGATACACGAAGACAGAGCGATTCAAATGTCACAAGCTTACAA
TCAAATGGACAATAAATCCAAGCCAAAAAGATTAAAAGGCACTATGGATAGCATGCACGC
TTTACATTGTCTATTTCTTTAATGCTGACACAAGAGGTTACAAACTCATTCATTAGAAAA
GAGGTATTACAAAAATAGCTCCAAAGAATGAATTGTGATAGCCTGGCTTGTTAGGGATGA
TAGACTAATCATATCAATAAGGAATTCCTTCTTTTTCGGGAGCCCATTGCGTACTGGACT
GGATGCACAGACGTTTGTACCAAGAGGGAACGCTCGTGTGGCCTGACGAGGACGTCGGTT
CCTCTGAGTGGTGGTGTACCTGATAGCCTGGCTTATTAGGGATGANNNNNNNNNNNNNNN
NATAAGGAATTCCTTCTTTTTCGGAAGCCCATTCAAACAGAACTCCCGTAGCTCTAGGAT
GGGTGACCGACCGNGAAGTTGATCCCGGGTGCGCATGAGGCGGACCTAAAGCACCACCGT
TAGGGCATATTTTGTTTTGAATAGTTTTGGTGATTGATGACAACACCTCTACGGACTAAT
CGTGTGCATTGAGCATTTCAGATTATACATCATAGGGCACAAGATGATTCGTCGCCCCTC
GGTGTTGTTGGAGCATGGTGTTTCCTACGGTTCTCTTTGGTAGTGTTGAGTAGTAGGAAA
GCCGTACTACTAAGAGGGGGTCCGCGTCGGAAAGGTNNNGGTGGAATCAACTCACACACG
CGCACATTTTCCTCCCCCCACCTTCTCTTTGCGGCAATGGAGCACCCGCTCGGTCTTTCG
CAGCATTTGCAAAGGGTCTAGCGGTAGTACCTCTCCAGGTGAGCGGTAATACCATTCCAA
TCGAGCGGTAGTACCGCTTGGGGATGGTAGTACCTCCCTCTTTGAGCGGTTGTACTTCGT
CGGACTTTTTGCGAACATTTCTCCAACGGTGGTAGGCTCGGTAGTAGTATTTCTACTACA
TTGCCTTTGTGCCAGCGGTAGTACCGCTCAGTCCTGGCGATAGTATCGCTAGGGACAACG
GTAGAACCGCTGTTCCCAAGCGGTAGTACCGTCAGGGGCGTGCTGACAGTTGGGATAACG
GTTGGACTTGTCCCCCTACTATATAAAGGGTTCACCTACCTCTCAAACCCTACCTTTGAC
CCTCCAAGANNCCATTGTTGCTCCCTAAGCTCATATGTGCCCGATCT