morexGenes - Barley RNA-seq Database

Contig contig_135546
Source Contig contig_135546
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_135546 (8535 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_135546

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_4823	1	1467 bp	MLOC_4823.1	Available	Available	None
MLOC_4824	2	4119 bp	MLOC_4824.2	Available	Available	LOC_Os04g45970.2, FRAME:+1, EVALUE:4e-16, 13104.m04616 protein glutamate dehydrogenase protein, putative, expressed
CDS Structure of MLOC_4823

CDS Structure of MLOC_4824

Contig Sequence (8535 bp)

>contig_135546 8535 assembly3_WGSMorex_rbca.fasta
TTCTCGTAATGATGTGATCCCATTATAAAATGACAACTCATGTCTACGGTTAGGAAACCT
TAACCATCTTTGATCAACGAGCTATTCTAGTAGAGGCTCACTAGGAACACGGTGTTGTTC
ATATATCCACACATGTACTTAAGTTTCTAGTCAATACAATTTAGCATGGATAATGAATGA
TTGTCATGAACAAGGAAATATGATAATAACAACTTTATTATTGACTATAGGTCATATTTC
CAACAGACAGGGGATGGCCTTCTAGCCATTTCCCTAGAGGTCTCCAACGACGATCGAGCG
ATGGAGAGAACCTTCAACGACAAGACGACAGTCCTACTCGTGAGGTTCCATGCCGTTTTG
ACCATGGAATAGGCGCAGGCGCACTTCAACACCGCTGTGGTGGAGGAGCAACCAAAGTTG
GCATTCCAACAGGTGCAAGAGGAGCATTGGTGCAACCTCTCCTGCCTCGAGCTGCACCGG
GACACCGAGGGCCAAATCTACAACGAGCTCACGAGCGAGGAGGCCATGGCCGCAGAGAAC
CCCAACTTCATCGCCGAGCAGCAGTCACTGTCTAAGGCGCGCTAGCGATTACAGATGAGA
ACACCGATAGGTGCATGTCGTTCCCGCCGCCAACTATGTTTCATCCGTGTTGGTTCAACA
ACGAGGCCTACCCGTCAACATACATGATGGAACTCACGTGCGTTGGAGACGGAAAGTTTA
CAGACTCCAACGAGGAGGATTAGTGCATGGGAGGTGGCATGGCCTTGAGTCGCAAGTGGG
ACGGTCTGTGTTCCATGTCCTACTCTACCTCGTCCATGACCGCACCTTCACCTTATCGGT
CTCATCCCCATCAAACATGGACATGACCAACGCCGAAGGGGAACAAAAGGACTTGCTGAA
CGGTCATTGTCGTAGATGTAAACTAGGTTTAGGTCCTATCACTTTTGTTTGATGAAATAT
GTCAAAACTATGTAATGGATGTGCTCTGTTTAGATGAAAATCATCAGGTTTGCATGTAAT
TTGTGTGGACTATTGAAATCCGGTTTAAAATGTATGTGGGCACAGTTGAATTGCGAGCTT
TCACATCAGTGTGTGTGTATTGGTTCAGACTAATCCATGAACAGATGGCATGATGTCTGA
TTTGGTATTAGCGTTGGAGATGCCCTTACTCAATTTTATCTTACCGTAGGATTTGCTTCT
CCACACGTGGAAAACAATCATGCAACATTATCTTATACTTCCTCCGTCTCAAAATAATTG
TCTCAACTTTGTACTTGTACTAGTACAAAGTTGTATTAAGATTGAGACACTTATTTTGGG
TCTGAGGGAGTAGGAAATAAACACACTACTATTAATTGTGTAAGGGCAATGCACGTTAAT
ATCAGATAAGATATTAATTGCATTGTACAGTAATATTAGGTAAGATATAAACTACATGTT
AATATTAAGCAAGATATAATTACTTGATTAATGTCGACCTAGACATTAGGCATGATATTA
ATTATTAGAGGATGCTAAATGTGTTTAGTGCTAAATATGTTTACACTAAACATTGGAGTG
CCATAGACCGTTGGATAGATACAAGGGAACATGTGAGATTTGTTGGATCTCCGCAACTCG
TTCTTCTTACAACGGTACATATGTACCAAATTCTACCGGGTTCATTTGAACCCAAGGCGA
ATGAAATGGCCCTCGTCCTTCTTTTTCTTTTTCTTTTGAAAAGGTGGTTGAAACCCCCGA
TCTCTACATCATTACAATGTGCATAAGCATTCTTACTAATTTTAAAGCAAACCATTACAT
AATATAGAAGTAACATATATGACTAAGTAAATTTCTTCCGCAACAACGCCTCCAACAAGG
GATAAATGACCATGCGTCATCATTGCCTCTTTTGACTAAAGGCGGACTGGACAAGGATTT
TCATCGTAGTTGTCGACAGTAGCTACCTCTAGCTAGCAGTAAACCATCACCATGACTAGT
TCCCACAACCTAGTTAGCGAAAGTTGAGGGAGCGACATTCAACTTTTGGAATTACGAGAT
ACAACATTTAGAATCCATGGAAGCAACTTTTCACACATAAAACATTGTATTGGGTAGAGC
ACCCTAGATCTAGGAGGTATGTCGGATTTCCGCGTATGCACACCCCGGATCCAGGGAGGT
CCACCGGATCTCAAAGCGAGGGCACACATGCACGCATAGAGTGGATGGGGCATCACATAC
CCTTATTAGGCACACATGCGAAATTCATGGTTACCAACTACACGAGAGTTCATATTGATC
ATACCAGGAGAGTATGCAAGCACATGTACATTCCACACTTTTTAAGTTACACGAGCGTCA
TTTTCGAAAACGACAATTCTCATAATATCTTGTGATGACTTCCTTACACTACCATACCTA
GCAGCGTTTATGGCGGGTTCCTCCATTTGAACAATCAAGAATAAGAAAATGAACTGGCAC
ACCATTTCCTCCTCTGAGAACCTAATAAACTTTACCAAATCTACATTGTAGTTTCCCTAC
CACCGAAGGGTGTTGGTTGCCACGTTAGTTTGATATCGGCAAGTGACTCCTTCATTGTGA
TGTTTTTATGTGCATGGGATCCTCCATAGTCTCTCTTGGGTTTCTTGGAAGTTCTCCATG
TATGTAATGGGGTTTGGCTATGAATTTTGACAAACACGGAGTAGGATGTGGACCAGATCT
AGGGAGGGAAGCCGGACCTGCAAGCGTGTGCATGTGGGCACACATAGAGTGTACGGGGCA
TCACATATCCTTATTAGGCACGCACACTAAATTCAAGGTTACTAACTACAAGAGAGTTTA
TATCCATCATACCAGGCGAGTATGCAAGAACATGTACGTTCCACACTTGTTCAAGTTGCA
CAAAGGCCATTTTCGAAAGTGATAATTCTCATAAGATCTTGCGATGACTTCCTTACACTA
CCATACCTAAGAGCGAATATGGTGGGTTCCTCCGATAGGACAACCAAGAATAAGACAATG
AACTGCCATGTTAGCTCGATGTCGGTGAGTGACTCCTTCATTGTGACGTTGTCACATGCA
CGTGATCCTCCATAGTCACTCTTGGGATTCTCGTAAGTTGTATGTATTGGGGCTCGCCCA
TGAATTCCAACGAGAGGGAGGATGGGTGTGGTTTATATGAGAGGGATAGATGTTCAATCG
AGAAGAATATACTTGGTTAAGAGTGAGAAAAAGGTTTGCGAGTTTTGAACAATGAACGCA
ACACGATGTGGTGGAAGTGATGAAGCGGGTGGGATGCTAAGAGTCAAGGGGGGGATTTTA
CCGGATATACCATTATGTACCCTTATGGTAGAATTTCTCAAACACAAAAATGGCATTCTA
TGAAAACTATAAAAACTTGGTGGACCTTACAAACATTGGGACCATTTTTACGGGAAAACC
ATGATACAACTTTTAGAAAACCTAGAAAGCAACTTTTCACAAAAAATGAATAAAAAACCT
TTGTATTAGTAGCATGCAACATAGAAACTAGGATGTATGATGTGCACGCGTGTAGAGAGA
GAGAGAGAGAGAGAGAGGCATTACCTATATTTTATTAGGTGTGTGGATTAAAAGTTGCAT
GCAGAGAATTCCGCGTATAAGTTGCAATGCTTATATATCCATCGGTTGAGTCTTCGACAA
TCATACAATACTTCTATTGGACGTATTGGTGAATATGCAAGCATATGTTCCACACTTGCT
TAAACTATACAAAAACGATATATTCATAAATGGAAAATGACAAATGTCACAAGATTGTGT
GACGACTCTCACAATCTTACTTCCGTTGGACATATTAATATTGGTGAATATGCAAGCATA
TGTTCCACGCTTGCTTACACTACAAAAACAAGACATTCAAAAACAACAAACGACAAATCT
CGGAAGATTGTGTGACGACTCTCTTAACCTGCCAGATTAGCGGTGATTATGGCGACTTTC
TCCATGACGACAATGCAGAAGAAGACAACACAGGGGCATACCATTTCCTCCGCTTAGAAG
CTTATCACCTCCATTAGCCCTAGATTGCACCACGCCCTACCGTTGAAGGGGGTGGGGGTG
AGACGTCATGTCAGCTCGATGCTAAAGACTGGTATTTGTCGACTTGCATGGGCTCCTTCA
TGATCTTTCCCGGTGTTCTCATAAGTCTCCCCTCTATGTATTAGGGATTAGCCATGAGTT
TGGACGACGATGAAGAGATATCGATGAGAGGGAGGTGCTTGGCTGTGTAGTATCAAGTAG
GTTAAGTGTAAGCAAAAGGTTTACGAGCTTGGAAGAATGAAGGTGACATGATATAATGGA
GGGGGTGAACATGATGGGATGCACGGGAGTAAGGGGAAGCACCTTTTTTGTACCCGATCT
ATCATACCGGTAGGTTTTCTCGATGAGAAAATATCTCGCATCGTATGGATAGTCTAGATG
CATATCTGAAACCTTGAGGGTACCCTCCGACCCTCCTTGGTTCAGCCAGACAAAACTGAA
GTTTATGAATTGAAACAACTTTTGGAAAAAATAGTTCATTTGGCTGAATCGAGATGGGCG
GAAGAGTTAAGGTTCTAAATTTGCATCCTGTGGGGAGCATTGCCCCATACTAACTAACTC
GTACTACCAATTCTTCTATTTTCCGTATTGGTGAATATGCAAGCATATGTTCCATGCTTG
CTTAAACTACAGAAACAACAAACGACAAATCTCACAAGATTCTACGACGGCCCTCTTAAC
TTGCCAGATTAGCAGTGATTATGGCGACTTCCTCCATGATGACAATGCAGAAAAAGACGA
CAAACAGGCATATCATTTTCTCACCTTAGAAGCTTATCACCTCCGCCAACCCTAGCTTGC
ACCACACCCTAGTGTCGAAGGGGGTGTGATGAGATTTCATGTCAGCTCGATGCTAAAGAC
TGGTATTTGTCGACTTGCATGGGCTCCTTCATGATCTTTCCCCGTGTTCTCATAAGTCTC
CCATCCCCCCTATGTATTAGGGATTAACCATGAGTTTGGACGACGATGGAGAAGAGATTT
TGATGAGAGGGAGGTGCTTAGCTGTGAAGTGTCAACTAGGTTAAGTGTAAGCAAAAGGTT
TACGAGCTTGGAAGAATGAAGGTGGCATGATGTAATGGAGGGGGTGAACGTGATGGGGTG
CACCCTTTTTTTTTACCAGATCTACCATACCGCTAGGTTTTCTCGATCAGAAATTTTTTT
TCCAATACCAACCCAATGCGCGTCGAGGCCACCCTCGTGAGGCGGCTCCACGAGATGCAT
AGGGGATACAGCTACGACTTTCAAATTAAGAGAAACCCTGGAATTAAAAAAAGGGCAATC
CTAAGCCTCTGACATCGTATGGATATTCTAGATGCATATTTGAAACCTTGAGGGTCCCCT
TCGAACCTCCTTGCTTCAGCCACATAAAACTAAAATTATGAATTGACATCACTTTTGAAA
AAAAAAGTTCATTTGGTTGAACCAAGAAGGGCGGAAGAGTTAAGGTTCCAAATCTGCAAC
ATATGAAGAGAATTGTCCCATACTAACTAACACGTACTACCAATTTCTCAAATAACAAAG
ATAGCATGAGCCATAAAACATCCGGTACAACCGCTTGGCCAGAAAACGAAGTTTTTGAGG
CGTGCCACCGGACATCTCTTGATCGGAGTCTACAACCCATACCACGCGTAGTACTAACAA
ATTTAGATTAGATTGCGATATTTCCTTACTACTCCCTTTTCGAGAGAAATATTCCATGCT
AATCCGGGCCACTCCCGCAGCCGACGCGCATCAGCAGCCAGCCCTTCCCCACCGTCGCAT
GAAGGCACGGCCACACACACGCACGCGACGATGGACGGCGCGTGTCCCGTTCCGCCAGCC
CAGGAGGAGCGAGGCACGGCGCCGTGCTGGCAGTGACCGTCTACCCGGATACGTCCACTC
CACGGCCTCTGTCCACATCCACGCTGCCAGCAATGAATTTTCCCTTTCTCTTGGGCCGAA
AGGTTTCCGAACTGAGATTTTTCCCGGGGAGGGGGTGACGGGACGAGATGCGCCTGGCTC
AGATGCGCCGCTCCTCGTTCACCCCCCACCGTCCCTTTTCAGGGGAGCGGGGAGGGACGA
GGCCAAGTTCGCCACCCCGCCGTGCCCGTGCAGGCAACGCAACGCAACCAGGGGTCACAT
GGGCAGAGGATCCGGAGACGGAGGCGCAAACAAAATCAACGCACGGACGCTTCCGACTTT
CAGTTCGGGCGATGGACGGACGGACCTACGCGAACGCGAGAGGAAAAAAACAAACGCGAA
AAGCGCGCTGGGAAAAGGCCGGGCGTGGGACGCACCGCATGCCCTGACAGGCGGACCACC
ACCACCACCACGCCGTCCGGCGGGACCCACGGGCGCGAGGGAGGGGTTAACGGCCGGGCA
TCATCGCCCCGATTTTCCAGCCCGGCTGTGATCTTTCCTCTGCAAACCGAAAGTAATTGC
GCACCAAAAACTGCCGACGCGTGCTGCAGGATCCATCCGAGTCCAACTAATCGCCGTCCC
GTCCCAGTCACCCCACACGCAGCGGCCTGATCCATCCATCAACCCAACGTTGGTAGCCTG
CTGGTTGCTCGTGCCGCTCCCTATTAATACCATCCTTCCTCCCTGGGCCTCGGCTCCGAA
CAACCGGAGGTTTGCGTCGCCCTCGATCCCCGGACAAAAATCCCCCTTTTTTACCCCTGC
CTTGCCGTTTCTGGTCGCGAGAGCCTCGCCACCACCCCCCACCCCGCCCCCGGGTCCGAT
CTCCCTCGCGGTCTGTCCCTTTCGCCCCGGCTTCCTATTTCCTTGCGGTTGCGGAGGTTG
TTGGAGCGGGGCGAAGGAGGAAAAGAAACAAGCGCCGCGCCGCCGCCGCAGCCATGAACG
CGCTCGCCGCGACCAGCCGCAACTTCCGCCAGGCCGCGCGGCTGCTCGGCCTCGACTCCA
AGCTCGAGAAGAGCCTCCTCATCCCCTTCCGCGAGATCAAGGTCCCTCTTCATCTCCTCT
CCACGCCGACCGGAGCTTGACTTTGTTTGCTTACAATCTTCGGCTTTTCCCTGGCAGGTC
GAATGCACCATCCCCAAGGACGACGGCACGCTGGCCTCCTTCGTGGGCTTCCGCGTGCAG
CATGACAATGCCCGCGGGCCCATGAAAGGTGGCATCCGCTACCACCCCGAGGTGAGCCAA
TCTCGTGGGATTGTCTTGCTACTTCCGTCAATTCGATTGCGATTTCTCCTGAAAGGCTAA
AACAAGACGCGTCCAAATAGCTTTCAAAAAGGATAAGCAGATTGACGCACGCAAACAAAA
AAGAAAAGAAAAGAGCTGAATTGACTGCCAACTTGCCATGCTTTCACATCCATTGTTCAT
GGTCAACGATGTCATTGTTTCTTTTCATAGATGTGGATCCACGGTACTTTGCATTCTTAG
GTTATTTTTGTATATGCTGTGTCCAGCTCTACCGCTTGACTTTCGCCTGTAAGCTTAGTT
TAGGGCGTCATGTAGATTCCTTGCCAGGCAAATGATGTGAAGCTAGAATCCTTTTTAATG
AGAGCATGCAGCGCTCCTCTGTTATTGCAAGCTCATATTTCTGTTGTTAAACTGTCGAAA
CACCTGGCGTATCTTCGAAGTCGTTGATTGTGTAACGCCCAATAAATAATCTGTTATCGA
TGACGGCAAATAATATGTGATGCTGGATAATGTTATTCGTATCCCATATTTTGTCGGTTC
TTTGACTGAATTACCTTTTGCGAGTAGGCGCTATTTTATCTAGAAATTGTATCAAGATGT
TGATTGTGTAACGCTCAGCAAATAGACTGTTACCGATAACGACAAAAGAATGTGTGATGC
TGGATCTTGTTGTTCGTATCCAATATTTTGTCGGTTGTTTGACTGAATTACCTTTTGTGA
GTAGGCGCCAGTTTAATCTAGAAATTGTTCTAAGACGTTGGTTGCGTAACGTCCACCAAA
TAATCTGTTATCGATGACGACAAGAGAATGTATGATGCTGGATCTTGTTATTCGTATCCA
ATATTTTGTCGGTTGTTTGACTGAATTACCCTTTGTGAGTAGGCACTATTTTATCTAGAA
ATTGTTTCAAGACGTTGATTGTGCAACGCCCAGCAAATAGGTTGTTATCGATGACGACAA
AAGAATGTGTGATGCTGGATCTTGTTATTCGTATCCAATATTTTGTCGGTTGTTTGACTG
AATTAGATATCATTTAAGACGTTGATTTTGTAATGCTCAGCAAGAAGGGGAGCCTTGGCG
CAGTGGTAAAGCTGCTGCCTTGTGACCATCAGGTCATGCGTTCAAGTCCTGAAAAATGTA
GGGAAAGGCTGCATACTAGAGACCCAAATGACAATGCGTTGAACCAATATTCTGCTGATA
TTTTTATTCGTTGAACCAATATTCTGCTGATATTTTTATTCGTTGAACCAATATTCTGCT
GATATTTTTATTCGTTGAACCAATATTCTGCTGATATTTTGAGAGACTGGAAAGTTTGAT
ATCCCTAAATGACAA