Contig Data
morexGenes
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Map Locations of contig_135493 (5350 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_135493

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_4780 1 817 bp MLOC_4780.1 Available Available None
MLOC_4781 1 374 bp MLOC_4781.1 Available Available None
MLOC_4779 2 943 bp AK371636 Available Available None





CDS Structure of MLOC_4780






CDS Structure of MLOC_4781






CDS Structure of MLOC_4779






Contig Sequence (5350 bp)

>contig_135493 5350 assembly3_WGSMorex_rbca.fasta
TTATCGAGTTTTGTAGGTGTGAGTGGTGGCTTCGGATGGTTTGATGTATATTTTTGTTAG
ACCTACATTGAATAATTAATAGAAATGATCGTATGCATCGATTGATGCCGAGGCCAGGGG
TTTGAACCTCCTTTTAAAAAAAATACTGTACAGGAATTGGTTTGAGTTGGTTTTTATCAT
TTCTAAGATATCAGTGTGACATTAAGTTCTAACAGTGCACTTCTAATGTTGTTTCTTGAA
TGCCCAATGATCAGGATACTATGGCGATCTATTAATATAGCTTTTAACATAAACCCTCCG
GATAGCATAAACACATTATTTGAAACGTGGCTGAACGGGGTTGATGATTTTATTGCTAAA
CATATTCGGATAGGAGTATGTGACTTGTTATGGGTTATGTGGAACTGTAGAAATGACATG
ATCTTTAACAGACAAACTCGTATAACTTTTTTGCAGGTCATCTTCATGGCCACATCATTA
ATCCATGTGTGGTCGTTGCTTACTCCTGTGGACGCCAGGAGCCTTATGATAGCGCAGGAT
TTATACAGCCGGTTTGGATGACGAGCCACTAATAGGATAGCCTAATTTGCATCCTTTTTT
AGCCGGATGTGGCTTTTCTTTTACTTGTTCATTTTTGTTTAGCTGCTCACTAAGAGCCTT
TGTAGATCTAAGACTTTTGTTGGATATTTCGTTTGCACAATAAAATGACTGCATGCATCG
TCATGATGGAGAGGCACCAGCTGGTGAGAAGCCGGGGGTTGTGTTGACTCATGTGCGCAT
CATACCATTAGCAGAGATGGCAGGCAGCCAGATTGCAGTGTACAATGGGAAAAGCTTCAA
TCAGATTGAGATCAAGCCGGAGACGACTGGCCAGTGGCCACTACCTCGCCGAGTTCTCCA
TCAGCTATACAAGCCCGTCAAGCACGGGCGGCCCGGCATCGGCGCCACCCACTCCTCACG
GTTCATTCCCCTCAAGTGAAAGGATCCTGCGGCCTGCGTGCCCTCAGCCGACTCCGTGCA
CCTCTTCCTGCAGCGAACGCCGTGTTTGTCCGAGATGGAACTTCTAGAATATCTATCTGT
GTGGAAGCATGAGGTGGAACTTCTAGCATGTCTATCTAGCTAGTGGAAATGCAGGAAGTA
TGGAAAATTGGGGGCGACTGAAAGCTGCATCTGTTATCTGTGTGGCTGTAGGTAGTGCCC
ACCTCGCTTGCCCTTCTTCATCCTCTGGCTCCTGGTGTGCCAGGTCCATTGTCCCTGCTG
TGCGCTTTGCAACCTTCTGATACTTTGTAGGTAGATAGTTTTTGCCTTGGTGATGTGTTC
CAGGCTCAGCCTGGTGTGGGGGCTTGCCTGGTTGGGGTCTCGTTTCACCGTGCAAACCTC
TGGTTACTTTTCCATTTGGTGCCTGTGGTGTGGTGTCCAGTTGGCAAGTGCCAATTGGAC
CCTAGAGGATAGGACATATACGGCGCCTGGGGTACCCAGAGAATTTGCTCACCTACACTT
GAGTTGGTTCTCCTGCTCTCACTTGCTGCATCTACCCCGGATCTCAGGTCAGGTCTACAA
TGGCGATGATCAGCGCCGCCGCAGCCGCCACCGTCGTCGCCGCCGCCAGGCCGTTGCAGG
CTCTAGGTAAGCAAGGTTGTCGGTTGACATCCCACCCCCCATGAAAATGTCAGTCGTGTG
AAGAGTTTTAAGTTGTTAACGGTGAGACGCCGGTGTTGAACTTGAACTGCTTGCAGGTCT
GCCTCTGGTGAAGGTGACCTGCAGGGCCGAGAGGCTGAGGTGCGGCTACTCCAAGGATGG
CAAGGAGGCGGCGGTCCTCAAGGGCGCGCCGCTGCTGGCCGCGGTGAGCGCAGCCGTGAC
GGCGTCCCCGGCGCTGGCGCTGGTGGACGAGCGGATGTCGACGGAGGGCACCGGGCTCAG
CCTGGGGCTGAGCAACAACCTGCTGGGGTGGATACTGCTGGGCGTGTTCGGCCTCATTTG
GTCCCTCTACACCGTCTACTCCTCCACCCTCGACGACGACGACGAGTCCGGCGGACTCTC
GCTCTGAAGCCTCAACACCACCACCACCACCATCCTCCTCTTCTTCTCCTTCTTCCTCTG
CCTCTGCCTCTGCCTCTGCCTGCCTTCCTTCCTCATCCCTGAGATATTTGCATAATTACC
ATGAATCTGTCAAGCATGGATGAATGCCGAGTTGCTGATTACGGTAGGAGAGGAGAAGTG
TAAGCTAGTAGCGGTGTCGTGTCGGCGTTAATTAAACTGTTGCAGTTGTTAACTTGGTAT
ATTGATCTTCAACGCAAATCGCATTGCCGGCAGGAAGCAAGTCCAGTTGTGTTAATCCAT
CGCATCCGTGTGTTTACACGACAGTCACACGACACGAGAGACAGCAGTCAATACCTGCAC
TGCACAATTGGCCGATGGCTTCAGTTCAGTGCGCAGGCTGACGCGGCGGCTTTCGTGCAG
GAGCTGGAGAGCCCAAATAGCAGCGATTGTTTCGTTCGCTTATCACTACGGGGTGGTGGC
GCAGTTGGCTAGCGCGTAGGTCTCATAGCTAACTAACAGCGAGTGATCCTGAGGTCGAGA
GTTCGAGCCTCTCTCACCCCACCAAATGAAAAGGAACATCGTTGTGATGAAACGCTACTG
TGACAACTTGGGTCGCCACATATACACCTGATAACATCAGGTGATACGAGCAACTCTGAA
CTTGCTCCCTTTCATTTTTTGTTCTGTTTCAGCTATGTTGAACTACTGCTTTTCCCTGTC
TTTATAACAACTCCTCTGCTTGTCCTGCACAACCATTTTGATGTGAAGACAAGAAAAGGG
CAGAAGAAATTTATCACGAGCGTGCATTTTTTCATACACAGGCCAGTGCTACAATGTATG
CGTCTAAAGTCTTTGGAAGTGTTTTTTTTCTTTTTAATTTTCATCGGGGAGAAGGGAAAA
GCCCCTCAATCAACTGATTATATTACGTAAAACCAACAAATGGAAAACCCCTTTTGAGTG
ATCAGAATTACATAGGGATCAAGAAAAGGGACGCACAGTGGAATATTTTCAGAATGTCCT
AAAAACACCGTACTATATTTATTCGGAAACTATGCTTTATTTAGTTGTAAAACTATGTTA
TTTTTTTATGCCATCTTGTCAAATAATGCAAAACGTGCGCATATTTATTAAAAAAGGACG
GTCAGCCGGCCATGCCGGTAATTATGGATCGCGGAAGTTGGATGCACCGTCGACCAAAAT
CTTAAACAGGGCGGACGGCCGACCCAAATGAACAAAAAACGGACAAAAGCGCTATCCGGT
TGGGTCGGCGTGTTGGGGTTGCTTTTATCACATTCTCTTCATAAAAAATACTTATAGTAA
GAATGGATGTATCTAGATTTACTTTAGTTCTAGATACGTTCACTTTTATTCAATTTTTAA
GACAAATAATTTCGGACGGAATGAGTATAAAAAATACTTATAATAAGAATTCATAGTAGG
ATCATCATGGTCTTATGGAGGATATGGTACTTGCGGAATGAAGTTGTTCATGGCAAAGCG
ATACCCTCCCTTGATATCTCCTGTTCTGTCCTTGCTAGCTACTATAATTCCTACAAGAAC
ATATCATTGAGCGTAGAGGATACGGTGAAAGGAAAAACCCCAGTGATGGAACTACTCCCT
CCAACATCCTCACCCGTAATAGTAGTCAAGAAGTGGCCGGCTCCGGATTCTAACATGGTG
GGCTTATCTACTGATGGCTCCTTTAACCTCGAGGATGGCACCGCTGGTTCACGGATGATC
CTTAGAGATTGCAAAGGGGATGTCATCTTCGCTTCCTACCGGAAATTGTTCCAATGCAAT
GATGCGTCAGAGGCCGAGCTTCAAGAAATAAAAGAAGGGCTACAACTGGCTTTTATTCAT
GCCTCATCACCGGTGGTGCTGCAATCTAATTCGGCTATAGCTCTAAAGATGATTGCTACT
GGTACTTATGATAGATCACTCTACGGTGTCTTACTGGTAGAAATTAAGGGTTTACTTTTG
AATAGGGAGGTTACTTTATGTAAGATTAGTCGTGAACAAAATAGAGTTGCACATTGCTTA
GCAAACTTTGGTCGTAGTGGTGATAGCACTGCATGTTGGTTGGGTCGACCATCTCCATGT
GTCACTATGCTGGTTGCTGAGGATTGTAAGTCTGCTACAGTTTAATAAATCTCTCTGTTT
CCCCGGAAAAAAGAAAGAAAGACGTGTGCGCATGGAAATCGAAAGCAAGCATGTCTTGTC
TGTTTTCCCGCGTCCGTTGGTCCTTGTTGTGTGTGGCGTGCCCGCCAGCCGTGCTGATTA
TATACCTGACGACCAGCGTGCACAGTTGCTTCTTCGGGGAGTCAAGTTAGTTGTGGTTGG
ACTCGTTTGACAGTCCGTGTTGCCTGCCAAACTCCAACGAATTTTCCAACGGGAATCTGT
ATGATGTCCAAGGTGACAACTGACGCGTAGCAGCTACTGCCTGCCTGCCTGCCCATATTT
TTGGACCCATGATCGATGATCCGTGATGCAATATACTATATATACTAGCAATTGGCTCCC
CTACTACGATCAGAGAGTACTACGCATCCACGAGCAATGCCAGCCATCGGCGCCACCGCC
GTCTTCGTCGCCGCCAGGCCGCCGCCGCGGGCTCTAGGTAAGCAAGCAAGCTTGTCGTAC
GTACGTCGTTCGTCCCCGTAGGAATGCCGGCGGCCTCGTGCAACGCGCTAAGTTGGCACT
CCTGACAATGAATGAGACGCTGTCGTGCTGCATGCAGGGTTGCCTCAGCTCAGTCTCAGA
GCGGCCGGGGCCCGGACCGGGAGGCTGAGGTGCAGCTGCTACAAGGATCTCAAGGAGAAG
GCGTCATCTGCTCTCGCTCTGGCCGTGGTCAAGGGCGCGCCGCTGCTCGCTGCGGCGAGC
GCCATGACGGCCGCGGCGGGCCCGGTGCTGGCTCCGGCTCTGGCTCTGGCGCTGGTGGAC
GGTCTGGTGTCGGCTGAAGGCACCGGGCTGGGCGACGACTTGCTGGGGTGGACCCTGATG
GTTGCCTTCGGCCTCGCCTTGTCCCACACCGTCTACCCCGACGATGACGACGATGACGAC
CAGTCCAGCGCCGGCGGCATCGCGGTCTGAACACCACACCGCCCGCCATCTTCTTCTTCT
TCTTCCTGCCTGTCTGATCCGGCCGTGAATGCTTTGCATTATCACCATCAGTCTACGAAG
CTTGGGTGGAATTCAATACCGAGTTGCTGATTACGCTAGGAGTACCATGACAGTGTCAAA
TGCTAGTATTAGGCCTCGTTTGGTTAAGGGGGATTGGGGAGGTTTTGAGAGGGAGGAATT
TCAGGGGATT