Map Locations of contig_135460 (10640 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_135460

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_4748 1 433 bp MLOC_4748.1 Available Available None
MLOC_4749 9 2805 bp MLOC_4749.2 Available Available LOC_Os12g30020.2, FRAME:-1, EVALUE:0.0, 13112.m03058 protein cyclin-T1-4, putative, expressed





CDS Structure of MLOC_4748






CDS Structure of MLOC_4749






Contig Sequence (10640 bp)

>contig_135460 10640 assembly3_WGSMorex_rbca.fasta
CTCTGGCCGGTGCTAGCAAAGAACCACATTACTNNNNNNNNNNNNNNNNTGTGGTCACTC
TCGTGACGGGTCGTGCCAGGTAGGACGACTATGTCGTTTTTACATGTTCCGGGCACACCG
TTGGTCCGAGATAGCCAGATATCCAGATAGTCAGTGGCTCAGTTGTACCTACAACAGATA
GCCACATATACAAAATCCACGGCCTCCCAACAGTTATCGTCTCCGACAGAGATCCAGTAT
TCAAAAGCCATTTCTGGCAGGAGCTTTTCAAAGCATCGGGCACAGAACTGAGACTCAGCA
CAGCTAACCATCCTCAGACTGACGATCAGACCGAGAGGGTCAACCAATGTGTGGAAACTT
TTCTGCGTTGCTTTACACAGGCATGCCCTCGTCGATGGAGCTTCTGGATACCCTTGGCTC
AATTCTGGTACAACAACGCTCACCACTCAGCTATCGGCATGACACCATTCAAGGCCGTGT
TTGTGTACGAACCGCGACATCGGGGGCTTTTGGCGGATACTGCTTGTTCGGTGCCAGCAC
TCAAGTCTTGGGTCGAGGAATGGGAGACAGTGCAACAACTTCTACAGCAACACCTCAATA
GAGCAAAGCAGCTGATGAAACACAAAGCAGACAAGAAGAGCTCCTATCGCACTTTCAAAG
TGGGTGATCAGGTTTATCTAAAACTACAACCGTATATACACACTTCGGTGGCACCTCGGG
CAAACCACAAGCTGGCATACAAGTTCTACAGGCCTTTCCCAATCATCTCCAAGATCAACG
AGGTGGCATTCAAGCTTCAGCTCCCTCCTCAGGCAAAAGTGCACCCTGTTTTTCATGTCT
CCCTACTGCAACGCGCCCTCACCCCTGGTACGACTGTAGAAACTCATCTTCTACATTGTT
CTGATGATCTCATTGTTCCCATAGCATTCCTTCAAACTCGTTGGCGCAAGAAGAACGGAG
GCGTGCGTGAACATGTGAAGATTAAGTGGTCTAATTTAGAGGCGTTGGGCGACACCTCGG
AGGACAAAGCTAGCCTCGTCATGAGGTTCCTGCATGCGGAAGCTTGGGGTCAAGCCTCGA
CTCAAGAAGAGGGGGATGACAACATACCTGCACGGCGAGAACCACCGGCCAACGACACCT
GCAGCCCTAGCGCAAGGCCCGCACGGCTGAGGAAGCCCAACCCCAATGTACATGGCCCAG
CCTGGGTCCATTGAGGCCGGCCCAAGAGAGTATAGCCAACCGCTACTTAACCTCCCGCGC
GCGAGGAGCACGGCATCCAGAGGATCAGGCGGCGGCAGCTTGTTTTCCCATTTCTTCTTC
CTCCCCGAACCCTAGCTCGATTCGTGTACTTCCTCGTATGTAATCGCGAGACTCTAAGCT
ACATCTACCATAGAGAGTATATGAGCAGACCCCTATCACTTGCTTATGAGAGAATGCATG
CCGCTCTCTGAAGCTGTGCGCTTCAGTGTGGGTGGCAGACGCAGTAACGATGGTGTTGTA
GTTGTAAGGTCTTTGGTGTTTGAATGATGTCTGTCAGTTGTGGCGTACCTTTGCTTGAAG
ATGTGAAGCACGGTTCACCATACTCTGGTGGTCAGACATGAGACCTGACCAAATAATAGA
TGATTGATATGTATCGCATGTCTTTTTACGTGCAATCATTCATGGTTTTCACTGCAACAA
ACGTGTCATATACATACGTAGGCATCATCATCTTCAGCAATTATTCATGGATGTTGGTGT
CAACATCTTTAGTCTTGACTATCGCTACATCACCACAGGCACCACCACGCCGCCCCGAGC
AGACACCTCGTTCCGGCTCAACAAAGCCACGGCCCACGGACAACAGCGATGCCATCACGG
CAGCACGCCTGCAACTCCTCACGGACTCCCGAGATAACTTTTTTGTCGAGCACATTGGAT
GCGTGCACTAGGAGCATCATCCAGCACGCCGGAAATTGTCCCGTCATCACGTTGATCCAT
CAGTGCGGGCTCACCTCCACCACCTGGACCTGGTTGCCAGCACGCTGCATCGGACCGACA
TCTCCTTTTTCGAGCACCAAGCGTCAATCCGTTTTTAGCTGATTATTATCTCTCCGCCCG
TCCAGCTACATTTTCTCTACCAGCGGTCTATTACGCCCCCTCATTCCGGGCAATCAATCC
ACCTATCACCGGCCAGCCTGGCCTTGAACACGGGCATAAGGAGGCATGAAATACGGTACT
TTTTAGCGGACCATACTTGCAGTCAAAAACCCCTTGTCACGCATCCCCAAACATGTTTCA
ACGGTACAGATTACGGGAGCAGCTCGACTCGGGAGGCAAAACGTTGCTTCCGAATTGCTA
CTACTTCACGATTGCATCCTCCGTTGTGGCACTAAATTCATTGCTTTTTTCAAGGTTGCT
ACGTGTTCATAATAAAAATATAAAGTTACAACACCATACGTACAACCAACGAACACAAAA
GCGAAAATAAAAATATAAAGTTACAACATCATACGTACAACCAACGAACACAAAAGCGAA
AAGAAAATTTGTCCCCATACAACTACAAAAAGGACCCCAAAATAAAAATAACACAATCAA
GTCCTTGGTGGTCCTTCTGCATAGAAAAGCAACCAACCACCATCATCACCCACCGTTAAC
GAAATACCACCGAAGTGGAAGGGGACGAAGATCCATCACAACCAATTCCGAAGGAGCACC
ATCACAACGAAGTCGCTTTGTGAGCCAAAGAACACGTCCACCGAGATAATTTCCAATGTA
GCACGTCGGCTGGGGGACATCCCCGTGCCACCTGCCGGACTTCAGCATCACCGTCATCAT
CCAATGCAGCAAGGCTGCCTGCCGCCGTCCACCAACCCAGCACCGAAACAACCATCCTCT
CCCATAGATCGCCATCGCCGCTCCTGATTGGAACAGCAACCGCCGACCCAGACAAGGAAA
AACTAGCCTCGCTGATCCAACTAACCAAAGAGGAAAACGAGCCATCGATATAGCAACGCT
GCCCAGGAGAACACCACCGAGATTGGGAAAGTCAAGGCAGATTTATTCGACGGAGCGACC
CTGCCAACGCCATCGAAGCAGCGCCTAACTGCTACCGCAAATATATCCTTTTGAAATTTT
GAAACACAGATTGAACATTGGATGAGATATTGGCTGAGAAGAATGGAAAGCTCGGAACAA
AAAACATGTGCAATCATGAGGTTTGTCCAAACAAGCCTTAAATACCGCAGGAGAAGAATT
GGGCTACTGGAATTACGAGCATTCCTACAGCGCATAAAATCAAGTCATCAGATTCTGCTA
GCAGGAGATTCCTCAACAGAAAAAAAAAATGGCTCCCCCAGTAGATCCACAAACAAATCT
CCATTGCAACTTGCAATCAGTTGATGGGTTCCAAAAACATCTGGGTACAAACATGAAGAC
CTGGATGTCTCATCAACAGTCCACAGAGCAGCTACATTTCCAGTAACACGTGCCTATGCT
CGTACCAAGAATTCTACCAAGTGTAGACTCTAGAACATCAATTCTGGCCCATCAACCTTC
AGGTCGAGGCATTTTATGTTTTCATGTCTACCAACAAGCTGAGCACCATGGTGGCTCACG
CTGTGCTTTGGCGTATCACTAGGATGCTGCGGCTTGTGCTCGAAAGCATCATTTCTTGGT
TGGAGACCGCTCATCTTTAATGTTCACCAGAACCTCAGCCTCTTTTGCAGTCTCTCGAAC
ATTCTGCTCGCCATTATTGTCCCCATTTTCTGCAACGTCATCAGCATTACGGTGATCCTC
TTGATGCACACTACAATGGTCCCTCTCCTGCTTGATCTTCTCATCCTCAACAGCCAACTC
CACACCATGTTCTAATTCCCTCTCAAGTAGGTCGTCATCATCCATCACATCTACCTTCCT
AGCAACATAACCCTTCGAATTTCTTCGCTTCTCCAAAGCTGCCTTTACCTTGTCCTTGTC
AATTTTATTCATGGCATCCATCATGGAGGATGAGACACTGGGATCACCACTGTTAGTGAG
ATTACCATCTCTCGATTCACTGGAACTAGCATGCGCTGGAAGAGGCTTCTCTTCTTCTGT
TGGAGTACCAGGTTTGTCGCTGGGCCTCGAACTTATCGGCAAGGACTTTGTGCCATCATG
CAAACCATCCTTTGTACTAGTATCAACTCTACCTCCACTCTGACTACTTATTTTGTCGTT
TTCATGGTCACCATTGTCATTTTGAAGACTTCTGTGGCTACCAATATGCTTGTGTGGCTT
TGAGCGCTCAGCACCATTATGAATTGGAACACCTGTTGGTGTAGAAGCACTGGAATCTGA
CTGTTTGGATGCTGGATGATGCACAACAGGAGGTTCCTCAGAGTTGGCTGCTGTTTTTAC
GGAGATCCTTTGATTAGGCACACCAGCTGAGCTACCTTCAGCTTCACTCCCATTTGTTGG
TTGTGACTGTACAACACGGTTTTGCTCATACAGCTCTAACATTTGATTGCTAACCTCTGC
AATCAAGAGATAAAGAAATGCATTAGTACTAGACGTGAATTTTATCAGGCCATGTTACCA
AAGCTCAACTACAAATGAACTGCTACTCCCTCTGTTCACAAATATAAGATGTTTTGGATA
TTTTAATATGGACTATATACGGACTGAAATGAGTGAACAACACACTAAAACGTGTCTACA
TACATCTGATTCACAAAAAACTTACAATATCTTATTTTTATGAACGGAGGGAGTAAAAAA
AGAATCAAAGCCTAATGAACAAGGAATACTATGGAGCACCATTGGAACAGACCAGATTCT
ACAATACCAAAGATTTTCTGGAACCATCAAATCTTCAAGCAACTCACTGAAATCATGCAC
TTTATGGTTTCCTGTTTGTAAACAGTCGGGTGCTCTTAGAGCATGCACAGTGGTTGAGAA
GGCGGCCTTTTCTTAGCTATCTAGAGATGATTACAAGACATGTTATACAGTGTATTATCT
TGTAATGTTGTCTCTAGTGATTAATTTTTGCATGCATATAAAACAATGTAGTGAAAAAAA
TAGGAAACGTGTGTAAGAGATGGCATCCACTACAATGGAGAAAAATATCTTATCTCAAGC
GTTAAGAGATCATCTCTTAGTTTTCTTTCTCTTTTTTTGAGAATGAAATCATCTCTTAGT
TGAGAGAAGGCTAAGCCCTTTTTCCACTTTTCTTTCTTCCATGTCAGCAATTATCCTCCA
TGACATCTTTTAGAAAAAGGCCGAAATCACCCCATTGTACATGCCCTTATAATCTTTATT
ACGGATATTCTATTTGGCACGTACAGAGGAGATTAAGAGTGTATTGCCAGATCTGTGAAC
CATTGAACTGGCTTAACTAGTCCCATATGAAGCAATAGTCACTAGAAAAAGTCAGAGCTT
GAACGCGTGATAGTATAGTAAATAATTCATAAAACTGTGTACAGCAACTATACCATATAT
AATTAGACTTTGGCTTTATACCCAGCACTAGCATAATGGCCGCGTTGCTATGGAACCGAA
AACTGGTTGCAGTTGTATTTGATTAGTAGCATACAACAACCAATGCACTTGTTACTTGAC
ATCATAAAAAGTACTACACCATAATCATAAAAGGGTAACACCATAGTAGTTCAACCAATA
GTACATGTCATAAAAAAACATCATCGGCTCTTACTTTGTAAAATCTAACAATTTTATGTA
CGAAAAAGCAGTCTGAGGAAATGATCTGAAGTACATTGACTCAAATGGAATTTTTATTGA
ACTCACTTTGCGCTATCTAGTAATTATTAATAAAGCATATTGAAATGATAAAGGGGTATA
ATGGACTGATCTATGTGGTACATGAGGAGCGGGAGTACGCACGCCCAGGAGTATAGAATC
ATCTTCCTTAGCTAGAATGAAGCAAGACACATCCAAATGGTTGTTTAACAGGAAAGTTTT
GTACGTGTTCTTATTTTTAGCTACTCAAAACAAGAACGGCACCTACAAAAAGATCAGTTT
CACACTTCCAAATATTTTCACAAATGTCCAAGTCATTGTACACTTTAATTCTTTCTTTGT
ACCCCAAAAATCCAGATGCCACAGGAACACATAACAAGGCGAGTCCCTGGTGGTAAAATA
TCCTAAACCACAACAGTAGTCACTGTACAGCAAGGGAGCTAGAAATACAAAAGGCACAAA
CCAAACAAAGCAGAAGGAAATTTTGAATTACTGACTTTGCATCCAGGAACCAACCTTCCA
GCTGTCTTGGTGTCACATCAAACTCCTGATACCAAGCCTTCTCACCGTCATCTGGAAGAA
ATTTCACTTTGAGAAACTTACCAGCCAAAAAGAGAGCACCTGCTGCAATAAGATGGGGCT
TGAATTGCAGACAGAGTGAAGTGCGCAGCCTGTACAGTATACACACTTTTACAGGTCTAG
TAGAGATATTAACTGAATACTGGTATGGCTAATAAGAACAAGAGTAGCATTAGCATACCC
ATCATTGACAAAATTCCAGGCAACCTGAGGAAGCGCATTATGAGTAATCTTGAATTTTTT
TATTGTTTCAACCAAGGGCTTGTAAGGATGGTGCACATTAAGGTCAAAACCAAGTGTTGC
AAGTACAACTCGCTCCCCAAGTAAAATGAGTTCCTTTTGCCGATCATATACTTCCTGCAC
AAGATAGTAGTAGACAGTTTGTTCAAGCATTACTCCTAGAGGAAATCACTTTGAAATAAC
TATAAACTGGTGCAGAGAAGATGTACATCGACAGAATATAAAGTGTACCGATACAATGGA
ACCTTCAGAAATATGTGGTAACTATAATAGAAAAGATCTGCATCGACAGGCAAAGTGTTC
TGATACAGTGGAGCAGAACCTACACAAGCATGCACGAGACCACAGAATGAACTACCAAAG
AGTTATTATTATTATTATTTCAGTGCATTGACTCACCCAAGTTAACACAGCAGATATTAA
TTTTTCGAACAAGCACAAATTGAAAATGGAAGCATGCAATGGCAATTATTTATGCCCGTC
CTCATTTTATTTATTTACTTTTTCACAAAATAAATCATCATCATCACCAGAAATAATTAG
GAATCAACATTTGTAGCATGTAGACCGCAAAAGTCACAAAAACCAACGCAAAAATGGATC
TCAGAGGCATGCATTACAAAACTGAGAAGTACACATACATCAATGATTATGATTAAATCA
TAGTAGTCAAAAAACAAGTCTACAACATCCACCAGAAAATACTTTGTTTGCACATCATGG
AGCAAAATTACTTTATACTCGATTCGCACCCAACACATCATAGAGCGAAATTACTTGCTT
ATACGGGAAAGGACATCTGTTATTTTTCCTTGTATCAGCTAAATTAGAGAATGGCAAGAT
CGTACGAGGATATAATTCCTATGATTCGGCACTCCTTCGTAAACAAGAGAAGAACCAAAC
ATTAGCCGGGTGTTGATTGTAAAATATGTAGCTGGTATACTTCAGCAGATGATGATTCAA
TCAAAACAGTTCCAAAATAAATGATATACTGATGACAAAAGGTTGGGATTCTGATAAATG
ATAAATACAACCAGCCTTCTGCTGGCTATGTTTCTGATGTTATTTTCTGTTATTGTATCA
GAAAAACAAGATTTATAGGGTGAAATCAGGTCAGGCTACAATTTTTGTAAAGGGAAAAAG
GTTCACCAAAGAGCAGTCCATAGCAAAGGAAGCATCCAATTGGATCCATTACATTACCCT
CTGCTTGATTTTCTGACCAGCAGCAGGATCCTTTTTATGAATAAGCTCATAAGAAACCAG
GATGACATCCTTCAAAGGCCTAGGTGTTTCTTCGACTTTTCCAGCCAAGAACATGCAAAC
AGTAGCGATTGTCTGTATGGATGTTAGATTCAGACTCCATTTGCCCATTCGCCATGAAAA
AATAAGAGTAACTGCATAACAAATAGTATACTTCCTCAGTTCCTAAATATAAGACCTTTT
AGAGATTCCGCTATAGAGTACATACGGAACAAAATGAGTGTAGATTCACTCATTTTATTC
CGTACATGGTGCATAGTGGAATCTCTAAAAGGTCTTANNNNNNGGAACGGAGGGAGTAGA
ATACTGATACTCTGTCAAGACGTATAGAGGAAAATCACACCATTACCACTTCTGCTGCAG
ATAAGAACACAAGAAATCACATGCACTCATATTTCAGTAAACACGCTTGGTACTACTTCA
TCGATGCAATCAAGTTATATATTTTAGTTGCTCTGAATTGTATTAAGCAAATATAATGAA
ACACTGAGTAGTGTGATTTCAGATGCTTTCGCGTGCAATAATTTAAGAGTGTCTGGGCCT
AAATCAACTGTGCTAGGTGTTTGAGAGCCGAACCAGCCAAATCATTCATGATAAACCCTT
AACCCCGCATAATTGATCAGATGGTGTGTCCACCTGTGAACTGCTATTTAGTAACATAAC
AAGGTCTCGGGCTCTTCTAAACTAAAAATGCCCACAGAGCACCAAAAGGATGTACATCTG
TGCATCTTATCCTCATAGAAAATACCTACTTTTTATAACCACCCCCTAGAGTTCACAAAA
GTATAAGTTGTTTTGACATCTACGGAGTCTGCTGCTAGCTTCAGCACCAACTTCTATTGG
ACTGGAGAAGTAAGAAGTGTATTATAAGCTATTAATGCCTCTGTATGCAGAGAACAATCA
CCAAACTGGAGAAACATGGAGATAGAAACTATTTGTTATTTTTATTCAAACTGAACTATG
AGGCAAAAACAGAATAGCATACTCAAATAAAGTATCTACATGTTACGAAGTTAGAAGCTG
CACTTCATCAAATATTTAAAAATTGCACTATAGTTAGTCATTAACTAACACTTACTCGTC
TATCATTTTTTGCATGAGATTGACGAAGGTAAAAGCGGTGACAGAACACAATAGATGTAG
CAATTGTCACTTGTGGCCTACATACAATGAAAAAATTCAGCATAAGCTGACAGTATAATT
CCAGCAATCGTTGTGGCATTATCTCCACATGTCATAAAAACTAAAGATACGAGCACAGCA
TTTTTTATCGTGATTGCCTCAGTAAAGAAAGTAGTGATCTAAACGCTCTTATATTTCTTT
ATGGAGGTAGCATTAAAGATATGATGCGTAGCATGGAAGCCTTCAAGGGCCAAAAGAAAT
AAATGCATACACACATGCACTGCCCAAAACAATTCTAAAATGCCAGACCACCATCATACA
GGGCATATCTTCAATATATATCTTAACATTTCATATGATATGATAGCTTATCGTTTTTAT
GAAGAAAAAATAGCCAGCAGTTCATTTGGAAAAAAATGGGCTAGCCATAAGAGTGCTCCA
TAATTAAGTAAATATTATCTTATCAGACAATATAAACACATAATTGTGAAATATTTAACA
TCTGGTTGGGTAAGTAGCAGCACTCAATTTTTTGGAGAAGTAAGGGGTAGTCAGCCAACA
GCTACAGCATCAATAAATGCATAAAAGGACATAAAATAACTTACACTTTGAGCCGCATCC
CCAAATCTTGTAGATAAGTGCAATACGATTTCCGAAGGTAAGTCTCTTTCTTTAAATCAA
TGCCATCCCTCTTGGACGGAGAATTCTCTTCTATTTCCTTTCTACTGAAATACCATGAAG
CACTAAGTTTGCCAGCTTTCTTATTCCCACTCTTTGTGATTCTGTAGGGGCTATTTTCTA
CAATTCTGTGATGTGAAGAATCACTTGGCAGCATAGCCATGTAAGATCCCAACTACATTC
AGCACACAATAGTATTAGGACAGTTGCTGAAAAGATACATGATAACATGATATAAATACT
GAGAAGCATAGTCCTGTTGCCAAGCTAAATAGTAAAGATCAAATATAGCTGGCAGATAGC
AGGGCCTGCTTGCAACAAATAAGTCAGCACGCCCAACTGTTGGCAAGAATTTGTCTAGTA
GAACCTGCCGTTACAAATGTATGCAGGGAACAGATGTACTGGATCGTAATTCTATGGGCT
AGGGCAACTGACATTTAGAAAATAAGCAGTTTAGCAGTTTCTGCAAATCAAAATTACACT
GGTATAAATAATCCACCCTGTTAACTTCCCAGATGTAAATGGCATTAAAAGCAGAAATTG
CTAAAAATAATTACTATATGAACAATATAGGTGTGATCAATCCCAATGTCTAGGATAACA
ATCTTGCTGTTATCTACCAGCCAAGGGTATCCACTGGTTAATAAGGACAGCCCGGAATTA
ATTATTGACCAATAGTAAATCTGTGAGCTGGTGAACCCGTGAATGACCAATTTACACACA
AATAACCATTACCCCTCGATTTTCTTGCTTCCTTTATTCCAACCTGCCACTGGCTATCTG
TGTGACTCAATTCTTTCTGGTCAAACACATTTGCAGAAAACTGACATTCAAAGATCTTTC
CAAACCCTGGCCCTGTTTCGAGCTTAGAATCCTACTGGACATCAGAATCACTGGCCAAGT
GTTCGTAGGCAGGTAGGCAATATTTGCAGAATTTACACCCCTGCCAATAACCATTGGACA
TCTGTTAGGGCTCGTTTGGTTAAGGGGGATTGGGGAGGTTTTGGGAGGAAAATTCCCGAG
AGGGCCAGAAACCCCACAGA