Map Locations of contig_135449 (9735 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_135449

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_4740 3 779 bp MLOC_4740.2 Available Available None
MLOC_4739 1 1065 bp MLOC_4739.1 Available Available None
MLOC_4738 7 3159 bp MLOC_4738.2 Available Available LOC_Os01g44970.1, FRAME:+3, EVALUE:0.0, 13101.m04608 protein polygalacturonase, putative, expressed





CDS Structure of MLOC_4740






CDS Structure of MLOC_4739






CDS Structure of MLOC_4738






Contig Sequence (9735 bp)

>contig_135449 9735 assembly3_WGSMorex_rbca.fasta
ATATGGAGATATATGCTCTAACAAGGCCTCCGCCGTCGCGCCGCCGAAGCAGCTGTAGTG
TGTGGCTACCCAGGAGGGTTCATGGAGGAGCTGAGTGGAGGGACGAGAGGGCGTCTGTGT
CACGGGGCTCCATGCAGGACATGGAGCGAGCCCGGCCGCGGCGGTTGGCTTGCCGGAGGC
TATCAAGAAAACCACATCGTGAAAGAAGACCCATGCAAAGAGATAGGATTTTCCTTTTTT
CTGCGGTAACGGTTTACCCATGAGTTTGGACGGAATCGAATTACAACTAAGCTGGGATCT
GATTCCTCCGTTATTTGATTACACTCGGTCAAAACAAACAAAATCTAACGTTATCTCTTA
CCGGTGTAAACCGATTACATTACAAAGTAATGAACCAAACACCTCATAGTAACATAATCT
CTAGGTCGGTCCACTGCTTCCTTTGACATACGCACTATGTCGGTTCTATATGACTTTACT
ATTGTTGATACGTCAATTTTTGTTTTTTATTTTCTCAGACTGTTGGTGTTTGATTCTGTA
TCCAAAGGTATTGTTCACTATGATTTGTATTCACTTGGTACTACATCGTGAGATAATAAA
AAGCTATTTTATAGAAAAAATGCAGGAGCTTCCTCATTTGTAATTTTGTATACCAGGACT
GTCAGGCCGACAGGTCTGGACCGGACAGCTTGCAAAACTACGTACTTGCTGCTTCGTTTG
CAACTACTTGTAGTATTCTGCATCCAGCGTTCAGCTTGTTCGTTGTTTTACTAGCAAGTT
GTAAGGTGTGTATTTATCTGAATGTCTGTATTAATATGTTGGCGCCTTGAGAATTAAGCA
GTGGACACGAGACCCTGCCAGTAGTAGCTATTGTGCTTGTCTTTCACCGAGCAGTTGCTG
CTAAATGCCGATTCATCGTCAAACCAGCAGGTTGGCGCTTGCGATAAAAGTGCATCATGT
GAGGCTTAGCCTGATGAGTGACCAGTCGAGTGTTTGTTACTGCATACTATAGTAACTTCA
TGTACGGAGAGCAGCTGTGCCTTGTGGGGGTGTACCTCCCCGTTGCCTGTATACGTCATA
TTAGGCCTTGTTCGGTTAATCCCTTCCAGAAGGGAATTGGAGAGGATTGAATGAGATTTA
GGTGGAATTTAACTTATAGGGGATTTAATCCCTCTCAATCCCCTCTAAACCCCTTCAAAT
TTAAAAGAACCGAACAAGGCCTTAGATGGACTGCAACGAAGTAACACTTCTTCCATTTCT
AAATATAAATTTTTATAGAGATTTCACTAAAAAAACTACATACGTATGAAACAAAATATG
ACTATACATATCCGTATGTAATCTTTCTTATATTTAAGAACGAATGGAGTACTACTAATG
TACAGGAACCTGTATCAATCAGATTATCAATGCTGCTGTTGTGAGTTGTGACTTGTCAGC
AGGACACGCTTGCGTGCGTATAAATCATTCAGGCACCTGCGGAATGCGGTTGTATAAAGA
AGAGAAGGTGGACCGGCGCCAAGACAATCTGAGCGTAGATTAGATTCTTGCAAATGGATT
CTGCAGCAGTGCAATAAAAGAATGGGACGAGCGCAGAAAGCAATGAAGATTAGGCGAGAG
GTGTACACGAAGCTGACCGTAGCGAACGCGACGGTAGGACAAGGAAAGGCCACATGTCCT
CCTACGTGTTGGAGCCACCTCTGCGACAGCGCGGTAGGACGCCTGACGTCGGGCGCAGTG
CAGTGCAGGGGGGGCGGTGATTGTTTCTGAGCAAGGGCATGTGGATTCAGGCCAGGGCCT
CTTTAATTGGCCTATGTCTTGCCATCACAAAATGTAGCACCAGTTATAGTTACCTGAAAA
TCATTCATTCACGTACAAGTAGGAGAGAAGTGTGGGCATGGAGCACCCATTGTCTTGTCC
TAGGGGCGGGGTCACGGCTGATCAAGTCACCGACCGAGCGGGGCAACCTGTTTTGGTGGC
CACCGATGGATGCACGGCCGTGAGCGGCAGGGCGGAGATGGATGGATGCATGCATGAATG
ATTGGACAAGCAAGGAAGGAAGGAAGGAGCACGGGACAAGAGAATCAGAGATGGCGACGG
CGTCCGCATGCGGATGCGGGCAGGCAGCGGTTGCGGCCCGGCCGATGCGCGGACAAAGCG
CGCCCCTTCCGTTCCGCCCGTGACCGTCGCCCATGTGACCCGGGGCATGTGCGCGCTCGT
CTTCTACCGCTCCCCTCTTCCCTTGCCCGGCTGTTCATGGCCAGACGTTGATTCGGTGGG
CGGGCTTCCGTTCCTTGACACCACCTTCGCCTTCACCTTCACGTACAACGTTGGTGTGCG
CGAGCAGCTCAAAACCGTTGCCACGAGCACGGGAGCACGTACGTATGCTTGAGGAACGGA
CTAGATGCTAGCTCGTCCCGTCAGTGATCGATCACATGTCTGCCTTTGGTTTTGGCAACC
GATCGAGAAGTGGGCACATACACACATAACTCTACTGCGCGCACAGCCATGCCAGAGACG
CATCAATCTTCCACCCCACAGCCACAGGTTAATAAAAACAAAAGAGAGGGGATCTGGGAT
GACTCCTCTTTCTAGTAGATTAAATAAACGTACAGCAAACTCTCTCTATCATTGAACACG
GGCGCAAAACCACCGAGGATACCGGGTAAAGCATTCTGTGTACTAAATTCTGGGAAGCAA
GTGAGCTCTTAGCTTTGCCTGAGATGACATTCTTGTTTACTTATTACTTCCTTCATTGTT
TCTTAGAGCCGCAAACATAACACAAGCATATTGTTTCAGCGAGATGCATGTGCTCTAGTA
GAGTCCTCATATTAAGCCGATCGGCAGAATGACCATCCATATAAGAGCTTGGGGGGAAAA
TGTCCTATTGACGAGTGGGTCTTACGATATGAAGAACACATCACCTCGATAACCTCCATA
ATGGCATATGGATTTTGGATTAGCTGCCAAACTGGACATACTGGCGGTCTAATTGCACGT
GATCTCTTGGACCATGGCCGATTTGTTTCCCCCACAAAATCTGGTGCCGAAACTATTCCT
CCCCGCTCGTGAATAAATTGTGTATGCTTCATTCCTGTTTCAGTAAATCGGTGTCAAAGA
AGATGCGGAGCAAACGGCATAGATGTGATTATAGCAGAGAGCCAAAAACAGAGAGACTAC
AGAATATGTCATAAGAGATGCGGTTCAAGTTCTCAACTGACTGCTATAAAGAAATTGTGA
AGTACTTCCTCCGTTCACAAATATAAGTTATTTTAGTTATTTCACTACAGACTATGTACA
ATATGAAATGAGTGAACAAATATTTGTGAACGGATGAAATATTGATTATGACGAGGAACA
TAAGCAACAAGAAGACATCACTACCATAATACCATTCCCCTGTGCAGCTACAAGACCTTT
GCATGCACGTGAGTTGGGGCCCCATTTTCCCCCATTCATTTTCATCTAATCTTGAGAGGC
GCAAACATGGCCACCCTCAAGCTGAAGCTTGTTATTTAAAGAGAACCCTCTGTCTTTCCC
TCCTCACAAGCAATCCACACCTCTTGTGTATGTTGCCTATCTATCTACTTCCCACGCACG
TACAAACACTCTCCACACAGCTAGCCAACAGGTACAACAGACACAAGGATGAAGCTCAGA
GTAAAGGGCTTGGGCCTTCTGCTTCTCCTTGTCTTGCTCGCTCTATGCTCCACCATTGAT
GTCTGCGACGCAAGGAGAGGCAAACATTGGAGGCCAAGGAGCTCACCGAGCTCCTCTCTG
CTCAAGAAGAAAGGGAAGACAAAGAAGGGCAGCTCTCACCGGCAGCACGGGAGCAACCGG
CGAAGCCCGCCACCAGGCCCTGCTGTTGGCAAAGGATACCCAAGCCCCAATGTACCTGTA
ACTCCGAGCCAGAGCCCGAAACCAAGCCCTGCCAAGAGCAATGGACATACAAGTCCACCA
CAGCCTCCATCTCCAAGCTGTGGAAAGGGCACACAGCCACCGCCGCAGCCACCACCTGCG
CCTGTGGCCTCACCGGGCGCGGTATTTAACGTGGTTGACTTCGGAGCCAAGGGTGATGGA
GTTTCAGACGATACAAAGGTCGGTCAACATCGCTGCCCCTCCCTTAGAATCGTTGTTTTA
TCCAGAGAGAGAATTCGCTAACTTGTGTAGCATCATGCATTCCCCGACTCACAAATTCTC
ACTGCCAATTCCATTTTGCATTGCGCATTTCTTTCTGCAATCCATGACAGGTTCCGTGTT
GATCAGTCAAGGAAAACTAGGCATGGGCTTTCCCAGATTAGAATTTCGGTGTTTGTATGT
TTGGGGTGGCACTTCAGCTAGTGTGAAGATTTGGATTTTTGCCAGACATCACGGCATGCA
TAATCCACGATCATCTGACTACCCTCGCATATTTCCCAGTGCAGAGCCGCAGGAAATTGT
CACTAGTGACATAGCTTTCTCTAGTCAGTATTTACATGACTGCCTGTGCTTACCGGAAAT
TTTTTATTTGTGTATTTTTGGATTCTTCTGTTGTTCACATGTCCATACTCCAAGCTCGTA
CGGCTTTTCTTTTATTTTTTTCCTTTCTGAGGAATCACGGTCTCCTGGTGAACAAAGTGG
GCATCAATTCAGGGTTAACAAGCAACTAAAAAAACAGGGTTCACAAGAAAAATATCGATA
TTTTTTCAAGTGTTTTTTGCACGCAAGAAACATATTGATTGCAAAAATTGGGATGAACCT
AATATACCTTTTTTTAGTGTTACATAGTTCTGGAAAACCAGTTCTTTAAATATTATCTTA
AAAAATTAAAAAGATTGAAATGTTTTATGTAGAGGCATACTTGAAATCCAAAATACATAA
CAGGAAAAAAGATTCAATGGTAGTTAAATTCTAGAAAACTGGGAGATGCATTGCAAGTTT
CCAAAAAATTAAGCTTCGACCAACATTCAACAGTGTATTTGGGCTTCTTTTCAGCCAAAA
GAAATTCTCGCTTTCTAGGTAGTGGCACAGTGGAAGTATATACTATGATTAGCTTAGGGA
TCTGAGCTCTACAAGTGCGTTTTGCCGCTGGGTTCATTTTATGGTACTAGAGTCTAGTCT
TTTGAGAACAAAACTCTAATAAATTACTGTGCATGCAGGCTTTTCAATCAGCGTGGGCTG
CTGCGTGCAAGCAGGGAGCGTCTACAGTTCTCGTACCATCAGAACTAGAGTTCCTTGTAG
GGCCAATCTCGTTTTCTGGGCCTTACTGCAAACCAAACATTCTTTTCCAGGTAATTCTGC
ACCTAATGCCAAATATATACCTGAACAAGCTTTCTCCATTAGTTGCATTGAACAATACAA
CTCCTTATTCTAGAGAAGTGGTAGGTTTTTACAACACCTGCAGGCCCACATTATTCTAGC
GATAAAGTTTCTATGTTACTCCCTCCGTTCCTAAATATAAGTCTGTTAGAGATTTCACTA
CAGGCTACATACGGAGCAAAATAAATGNNNNNNNNNNNTAAAATATGTCTATATATATAT
ATATGTAGTCCCTAGTAGAATCTCCTAAAAGACTTATATTTAGTAACGGAGGGAGTAGTA
TAGATACACCATCCTATTTACTCTTATATATGCAGGGAAAATGATCTCTTGATGTTATGG
GCATGTAAAAGATTGCAATGCTACATCCGATATGTCAAAATAACTCAAAGTTTCTTCATG
TTTAAGACCGTAAAACATTTCCAATGAAACATAATAATTTAAATTGTTTCTATGTCTAAG
ACCATACCACAGCAGGTTTCAAGTGGCGGGCTATTTGAAATAAAAATGAAACGAAATTTT
TCATGTGTACAAAGAGAAACAAACTCCAATCTGGCAAAGGTGAAACACAAAAACATAATG
GGGCTAAATGATGTGCTAATTTTGTAGCTGGAAGGAACGATCTTAGCCCCAACAAATGCT
AAAGCATGGGGTTCTGGCTTGCTTCAATGGCTTGAATTCACCAAACTAAGTGGATTATCA
ATTCAAGGCAGTGGCACCATAAATGGTAGGGGGCAACAGTGGTGGACCTACTCAGACCCA
AATGACGATGAGGATGACGACACAGTAAGACCCGACCATCTAGTATTACTAGATCACTCA
ATTCAAAAGTTGGTCTATTAATCACTAACCTTGGATACATTCCAGCAGTACAATCAGGAG
CTTGAAAGGATGCCACGGGTTAAACCTACGGTAAGATCAGTATCTTTAGTGCACTTTCAG
AACTGTATACCAAAACAAACCTCTCACAGTTTTGATTCCATACTCTGATGCAGGCATTGA
GGTTCTATGGTTCTTCAAATGTCGTAGTGGCTGGCATCACAATTGTCAACAGCTCACAGT
GCCATCTCAAGTTTGACAACTGTCAAGGGGTGCTGGTCCACGACCTGACAATATCCTCCC
CTGAGAACAGTCTCAACACCGACGGAATACACCTGCAGAACTCCAAAGATGTCAGCATTC
ATCATACCAACTTGGCTTGCGGTAATTCCTCTTTATGACTAACTTCAAGAAGAATTTTGT
TTTGCCAATCTAGCATGCATTCATATTATGTTTAGCAATTTTGTTTTGCCAACACGGGTC
CACGTGAAACATATCTTCAACAAGAATTTGAGAACACAAGACAATTTATATATTCCAATA
AACTACAGTATAATATAAGGCATATGATCAACTGAAAGCATGTCCCTCTGTTCTGCAAGC
TCTGCAGTGCAGGGACAGTTCCAGACTTAGGGTACACTGGAAAAAGGCGGTGAATCATAT
CGAAGCATCTTTTGCAGTAACACACAAATGGTACAATAAGTATATAGCACAGATCACATG
GCATCTTTTGTCTTGTTCGATGCAGGTGACGATTGCATCTCCATCCAGACAGGATGTAGC
AACATATACATACACAATGTGAATTGTGGACCAGGCCATGGAATCAGCATTGGTGGACTA
GGCCGGGACAACACAAAAGCATGCGTCTCTAATGTTACAGTAAGAGATGTCAACATGTTC
AGAACAATGACTGGTGTCAGAATCAAGACCTGGCAGGTAAGATCAGAAAGAGCATGCAGA
ATAAACTCATGATACCTACTGAGCTAAGCCAATTGAATTCTCCTTGCAGGGTGGTATAGG
GCTGGTTCAAGACATAAGGTTCTCAAACATACAAGTCTCCGAAGTTCAAACACCTATTAT
GATAGACCAGTTCTATTGCGACAAAAGAACCTGCACAAATCAAACATCAGCAGTGGCGGT
ATCAGGCGTTCAGTATGAGAATATCAGAGGGACATTTACAATCAAGCCTCTCCATTTTGC
ATGCAGTGACAGCTCACCTTGTTCAGGGATCACACTTACCGGAGTACAACTTAAACCCGT
GCAAATAGCGCACTACCACCTAAACAATCCATTCTGTTGGCAAGCTTTTGGGGAACTCTT
CACGCCAACCATCCCTCCCATAGCTTGTCTGCAGATTGGAAAACCTGCTGGGAACAACTT
GCAGTCATACCATGACATATGCTGAAACACAGATAGTATCCTCATCCATTAGTTGGTGCT
TATCCGTGAGTGGTCGTTGTGATGCTTCCGACCCTTTGCACCATTGCTTCGTCATGTGCA
TATATACACAGTTAATTTATGTTTTGTTATCATGGCAAGTGTGTCATGTTTGTGGTAAAG
CAAACATAGATATTTTCATATAAAATGGGCAGGCAGACAGATTATGTGTGTTAGCTGAAA
AAATATAGATCATATTATTCTATGCTAATACAAAGTATACAACAACAACAAAGCCTTTAG
TTCCAAACAAGTTGGGTAGACTAGAGGTGAAACCCATAAGATATCGCAACCATGGTTCTG
GCACATGGATAGTGTTAAGCTTCATGCACTAGCCACTCCAATCAAAAGTCCGAATTAATG
AAAAGGGCTAGGCAATCCACCATACACTTCAACACCCCCTCTCACTTGTGACGCGGAAAG
TCAACACATGGATAAACTCAGAGGTATGGCTCAAGAGGCCTATACGTGGACAAAGGGGAG
CATCAGCAAATTTTTTGATAAATTGTGAAAGCCACGACTTGAACTCAAGACCTTGGACTC
TAATACCATGTTAAGCTTCATGCACTAGCTAACGCAACCAAAAGTCCGAACAAATGGAAA
GGGCTAGGCAATCCACATATACACTTCAACAGATAGCAAGCTTCCACGCACCCCTGTCCA
TGGCTAGTTCTTTAGCGATACTTCAGTCCTTCAAAACTCTCTTACAGACTCCTCCCATGC
CAAGTTCGGCCTACCCCAATCTCTCCTGACATTATCAACACGTTTTAGTCGTCCGCTCTG
CGCTGGAGTAAGCATGTGCTAAATATGCCCAAACCATCTTAAACGATGTTGGACAATGGC
TAGTTCTTTAGTGATACTCCAGCCTTCAGAACTCTCTTACAGACTCCTCCCATGTCAAGT
TCATCCTACCCTGATCTCTCTTGACATTATCAGCATGCTTTAGCCGTCCGTTATGCACCA
TCTCAAATGATGTTGGACAAGCTTCTCTTCAATAGGTGTTACCCCGACTCTATCTCGTAT
ATCATCATTTTGGACCCGGTCCTTCTTTGTGTGGCCACACATCCATCTCAACATGCACAT
CTCCACCACACCTAACTATTGAACATGTCGCCTTTTAGTCGGCCAACAGTAAGTCATACA
ACATTGCGGGTCGAATTGCCGTCCTATAGAACCTGCCTTTTAGCTTTTGTGGCACTCTCT
TGTCACAGAGAAAGCCAGAAGCTTGGCGCCGTTTCATCCATACGACTTTGGTTCGATGGT
TCACATTTTCATCGATATTCCCATCCTTCTGCGACACTGACCCCAAATATCGAAAGGTGT
CCTTCTGAAGCACCGCCTGCCCATCAAGGCTAACCTCCTCCTCCTCATGCCTAGTAGTAC
TGAAACCACACCTCGTGTACTCGGTTTTAGTTCTACTAAGTCTAAAACCTTTTGATTCGA
AGGTTTGTCTCCATAGCTCTAACTTCCTATTAACCCATGTCCGCACTATCATCAACTAGC
ACCGCTTCATCTGTAAAGATCATACATCATGAGATATGTCCTTATATATCCCTTGTGACC
TCATGCATCGCCAAGGCAAAAAAGATAAGGGCTCAAAGCTGACCGTGGTGCAGTCCTATT
TTAATCAAAAAGGCACCTGTGTCGCTATCACTTGTACGAACACTACGACATTATTGTACA
TGTTCTTAATGAGAGTAATGTAATTTGTTGGGACTTTGTGTTTCTCCAAGGCCCACCATG
ACATTCTACGGTGTCTTAGCATAGGCCTTCTCCAAGTTAATGAACACCATGTGTAGGTCC
ATCTTCTGCTCCCTGTATCTCTCCATAAATTGTCATACCAAGAAAATGGCTTCCATGGTC
GACCTCCCAGATATGAAACCAAACTGATTTTTGGTCACGCCTGTCATTCTTCTTAAGCGG
TGCTCAATGACTCTCTCGTTGAAAGGACGTGGATGTCGCCTAGAGGGGGGTGAATATGCA
TTTTAAAATAATTACGGTTTAGGCTTAAACAAATGCAGAATAAAACTAGCATTTAATAAG
TCAAGCACGAAATCTAAAACAACTAGGCTCATCTATGTACACCTACAACTTATGCTAAGC
AAGATAAANNNNNAAGTGATAGCAAGATATATAACGAGAAACAATATGACAGTCACAAAG
TAAAGTGCATAAGTA