Map Locations of contig_135441 (10668 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_135441

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_4729 1 4662 bp MLOC_4729.1 Available Available LOC_Os06g15700.1, FRAME:-3, EVALUE:0.0, 13106.m01735 protein expressed protein
MLOC_4728 1 1523 bp MLOC_4728.1 Available Available LOC_Os06g15700.1, FRAME:-1, EVALUE:4e-133, 13106.m01735 protein expressed protein





CDS Structure of MLOC_4729






CDS Structure of MLOC_4728






Contig Sequence (10668 bp)

>contig_135441 10668 assembly3_WGSMorex_rbca.fasta
AAGCAGCGCTTTGGGCCAGAGCCGGCGCACAAGGCCTCAAAGCTGCGATCCCACATACCT
GGGACGTCCACTGATTTTCTTTTCTAGCCCTGTAACCACCTCCTAGGAGGATTGTAATTC
AAACCCCTATCTTTTCAAGGAAATGAAACGCAAAAGTCTTTTGCGTTTTCTCGAAAAATA
AATGCAAGTTGGCTTCTAGAGTAACAGTTCTTGATATACTGTAGGGATTATTTTGACAAT
AAATTGGTGTATATATTATTTACAAAAAAATAGAAATATTGAAGTGCCAAATGAGACACA
AAATACAGATCCTTATGTGTTGTTCCAAATCTTAACTGGGTAATGATGGGCATGTGATTA
GAACTGGGTAACTGGCCTATAACTTCTAGTGATAATAGCAAAGGAATCAAGAGTGAGTTG
ATCAGAGACCAAACAAAATAGTCTGATGTGATGACATGTCACTAACCCTATATATGCAGA
CAGCTTTCGCCTATATTTGAGAATGAGTGAAAACTTACCTGTTCCTTATACCAAGAAGTG
CATAATGTACAGCACGGGCAGTTGCTGATACTGGAGCTACTACAGCAGCTGGAGCTCCAC
AAATTGCAGTAGTCAGTGCTGATCTGGCACCAGCCCCGCGATTATACACGTTAATAGGGT
TCCCAATCAAAGCAGAGGCAGTCCTTCCAAGTCCATCAGTAAAGCTTTCATAAGCCTGAA
CAAAGTTCCAGGTTAATATTAAAACACTCGCACTACCTGTGTACTTTAGGATTCAGGCTA
GTACAGTTCAGAGACCCAGGTGAAGCAATTTCAAGGTCTATTTTTAACTCATCTAGAAAC
TTTCGTAGTGATGCAAAATTAAACTCCAAATCACAGAAAATTAGCAGAGCCCTGAATCCA
ACTTCATGAAGAGTCAATTTACATGTTATTCCAGAACAGGAGATATTTTTATCATGCAAT
TCAAAGGAATTGAATACCTGCTTTATTCCTTGTGTCGCATTTTCGGGTTGGTTTGCCCTT
ACGTTATCTTTGTTTCTTTTAGCTTCACACGCGGCTAAAGGTGGTGGTAGAGCTGTAAGG
GCATGTTCTGCCTTCAGCAGCATATCATGAGCTCCCGCTGCCAAATGGACACCAAGCCCT
ACAGCTTCAATGGAAACACTTCTGATAAAGGCGACAGCACCTGCCAGAAAGAATGCCAGA
ATCACCATTAATACATGGCATCAAATATTAAAACACACCACATACGAACTTCAACATATA
TTTTAAGCAATGTATCTCCGTACAATAGTACGGCATATATGTAGCTTACCTCTTTGCATT
CCCTTGACCAACTTCCGGTCTTTCTTGTAACTTTCGATGGGTAAAGATATCAATTTCTTA
GTGCCTGAAACAACGGCACTGACTGATTTTAAAGGAGGAAGCCCTTTTAACAATTTATGG
ACCTACACAAACATAACACATTGTCAGTTCTTTTACAAATGATGTGTTCAGACAAGTGAT
CGAGAAAAAAAAGTTATTTATTAAGATATATTTTCTCCTTATTTTATGCAACTGTGTATA
GTATACCTACAAATGGAGCAGCACATATTTCAAACTCTATTTCTCTCATAATATTTTCCC
ATGTTAACTTTGTATTGTTTGCACATGCAACAGCAAGCATATCTAAATGTACAGATGAGC
ATGGGGAGATCATGACCTGATTTTTAGATATGTCCTCCAACCACTCTGCACCAACTGTTT
CACAAATACTATTCCACCCATACACCCCCATTGCAGAAACATGTTTAAGCTTCAAATCGA
TTCCCTGCAGAAGAAACTTCATTAGGATTGCATATCAACAGACTGATTGCTTCTAGAGTA
TTTTTTTCAACAACAGTTTACCTTCAACGGAAGGATGTTGAGAAGTTCTGCATAATTTCC
CTTGCCTAGTGCAACAGGATCGAACTGACGAGGGATATAATTGATGTGCAGAACAATAGG
CTTGACATCAAATTTCTGGCATCAGAGGGGGGGCAAATCAGATCGAGATGATTCCTACTA
AACATTTTTTCGAGAAAACGCAAAAAGCCTTTGCATTTCATTGTATTAAACATAAAGAAC
CCTGCTGCCTACCAGTAAAAAGTTATGTTCTGCTACATGTGCAGATTTTTTTTATTATTT
TGCGAGATTACACGTGCAGAATTTTTAGTCATGTTTCATTAGTGCAAAAAGTTCTCACGT
AAACCATACCAAGTCTGGTGAATAACAAACAAAAATCAAGAGGATCCTTTTTTAGACTCC
AAAGTACCTGAAAGAACGGAAGTAATGCCTCATCCAGAACTGTATTGTTTCCATAGGTTG
TGCTCTCTATATGAACAATATCATTTTCGCAAGGAAAATGAGAGCTGTTGTTACAAGAGT
CATTCTGGAAAAAACACATGAGGAACTTAAGCTGCCCTTGATCAAGATGTAATTGAAGAG
GCAAAATCTCAAGGCACAATCTGAAAAGGTTAGGTGCAAGAGAAGACGGTCAGTCATCAT
ACTGGGTGCGCATATAAGGTGTCGGAAGGAAGCGATGGGTAACAGACAGCACTTAATTCA
ATGATACTTGGGAATTATAGATCAGCATTTAAATACGGCACATACACGAAATTAGTGTTA
ACAACAAAGGCCAACAGCAACAGTCTTGTCACCAACAAAGGCATGAATTTCGAATTCAGG
TTTGCCATCACGAATTTGTTTTGCGTCTAAAACTCAATATTGTTAAAGCAACCTAAAGCC
TGCCATCGTGCTAACTTTTGGACATTATGGTGTAATTGAGATGTCCACATTACATACGAA
ATATTAGTTCATAAATGTCCATAACTACACGTATGAAGCAACCTCAATACTGTATTGTAC
AAAAAAAAAGACACCAAATTAGATCCATTTAGTCATTTACTACAGGTTTTTATCATTTAT
GCCACTAGTTGTGTCTCACTACTCAGTTTTGCCATTAGAAGTTACAACTGCTCAAAAATG
CCATCGTTCCATGAGATGCTTGCTCAAAAATGTCATTGTTCCATTAGATGTTTGCTCAAA
AATGTCATTAGACATCGTTATTGTCAGGTCAAACCCGTTGGCGATGTTAAATGACAAAAT
AACCCCTAGACCCACGTGTCACTTCTCTCTATTTCACAATGATAAGTGTGGGCCTCACAT
GTCAGGAGTAAGCAAGCGATTAATTTTAGAGGAAAATAAGAATGATGTTGGGATCAAGTG
GGACCCACACTTTATTGTAGTGAGATAGAGGGAGAGCTGACATGTTGGTCCATAGGTATT
TTTGGTCATTATAACATGGCAAACGAGATTTACCTGTAATCTTCCAAAGGAGTCTGTGGC
TCGGGCTTTACAGACTCCAGTTCTAACGTGAATGCACTAGAACAAGATTCTCTTGGGTGA
TCTGGGTCGTAGCAGCCAAGAACCTTTTAGAAGGACCAGAAGAGTTAAAACCATTAGCCC
AGTGATAATAGCAGATGCTTTACGTAATTTTAGCCACAAAAAGACGCACCATTTTCCATG
GAGCATCCACCCTTTGGTCACAAAGATTTATGTCCCGTGCGGAGATAGATAACTTAGAAA
CATAAACACCCCCATCTGGATACATATCAAACTGTACACCAAGCCCCGAGATAAGAAATT
CTAAGGAAGAACTCATATCCCTTCCACTTGAGCATGAGAAGCTATTTACATCTTTCTGAG
CTAATGACCAATCATCTCCAGCATACATTCGCCAATTGACATTTACATCATGAATTATAA
CCTTTCCTTTCAAATAACAAGATTCCTCATAATTCAAGCCGCAAACAGTAGGCTTCCCTT
CTTGTCGGGCCACATGCCCTCCTTGTGGGTTGTTCGTTTCCAGAACATGACTCTCAACTA
TTGTCAAGGGAATACTGTTATACCATCCACCATCTTCAAATTCCATGGTTTTATAAGCAT
CATCACCAGATATACATTGATGTCCTACATTACATAGAGTTGACGATGATGTGTGTAGGT
CAGGCATATAGTAAGAGTCAATAATTTGCTCATGACAGGAGTCCTGTTTCAATGGTATTT
CAGTTGTATTGACTTTTGGAGTAGCTAATGATGATCCAAACAAAATGTGTGAAACACCGA
CGTCAGTTGCCCCAGGGGTGGGCGACTTAGAGTCAACATCCGTTCCATTGCTACACGGTG
AGTTGTGACAATTTCTGCTAGAAACATTGTAGGCTTTGTAGTCCTGGTCTGTGTAAAAAG
CATTCTCAATTATATCATCAAGTAGTCCATCTGATAAGCATTCTCCAGAATATGCCAAGT
TGTCAATGCTGCTCTCTGATTTGTCTGATGCATCACTGGTCATATTATGGTTGTTTGCTT
GCTGGACACTATTCCACCTAGATTGTAGATGAACTAAAGCATCACGCATGTCTGGAGCAT
ATAGCTTCTGGAGTTGGGAACACAAACAAATAAGACCATGTGTTGTATCACGACATGTAC
CAATATCAAATTGTGAATCTGATATTTCAAGCTTCCAAAAGGAAGTGTCAATTCTTAGAG
TAGCTTCAATGAACGTGTCACGGGCAATCTTAGTGTAACCCATTTTACGAAGATAATCAA
CACCATAACCGCAAGTGGCATTTTTGGAACCAAGTGATTCACAGATGAGAAGACCGAGAT
CTCGCAGCTGGATATCAAAATCTGTAGCTGTAGAGTCTGATGCAGATATACTGTGAAGTT
TAAATGATGATGCAGCTAAAATGCATGAAAACAACTTGCGATCATGAGCTTCAGCGCTGA
AGGTGGAATTTTTTACATGAGATTCATAGCTCGCAGCAACATCAACCAACTCAAGAAAAA
AAGATGACCGGTCACTAGGACATAAATTATCCTCTGTTCTGCTGTTATTGGACTGTTCAG
TTCCGCATGAACCTGCACTAAACAGCAGGCACATTGCACTGATCCAATCCATGCGTCCAC
CAGGTGCCACAATTGTCCCAGAACGAAAACTGACAGAAGTATAGTTCTCTTGTAGATTTG
GGTTCCTGATGTGGGTCACAGAACAGCCAGAAGTTCCAAAAGATAGTGCATTGTTTCCTT
CACCATCACCTCGCATGTTAGCAGAGTCCTTGCAGGCAACTAGGAGAAAAACTTTGCTTT
CGGCATAGGCTTTATCATTTGTACCAGTAATAGAACCCCAAAGCTCACTTTCACCATGAT
TCACCCAAAGAAAACTGGCCTTATTGGTTCCGCCTACATTAGAAAATGAGCACAGAGAAA
ATTTTGAAATGGACAGCTTAAAACAATTCCAGGAACCTTCTAGTTCTGTCTGCAGCAAAG
GACCAACTACCACAGTTTCATTTAATTCAGTACAAATATCCAAAAAGCTGCATTCAAAAG
TGATAGCTGATTGCATGGCAACATCATTGATGTGCATAGATTTGTCGCTTCCACTTTCAG
AGCTGCTCGTTGCACCATCAGACAGCCCGCTGGGAATGTGATCTAGTAGCTGATTCAGTA
ATCCACAATCCTTCTTATTGAGATGAACTGAAACTGAAGAAAGTTTAATATGCAGAAAGC
ACTCAGTGCTCTGAAGGAGCTCCTGGCGTATACTATAACTCGACTCTTCGAGATCCTGTG
AGGTTGTATAAGAGGAAACACCAGCACAATTGCCCCTTTCTCTCTGAGTAATCTTTTGGT
TGTGCAGGTTTGGCAAACTCCAAGCTTTACTAACCATCTCAGGGCCAGTTACAGGGTATT
TTCTCCAGATCATCATAATACTAGAGTCGCCACAGCTGTAACTAGTGACTGAGATAATCT
TCAGAGCAAAAAAAGTTTGCCTACTCAAAGAACGGCTTCTGTCACCCAATTCATAGCTCA
TCGGTCTAAGCAAATAGATGTCGAAGTTCCCAGCAGCCAAATGGAGTGAGGTAGATGGTA
TGCTGGAATGAGCATCATTAGGCCTTTCCTTTCGGAATGGAGATGAAGCTTCCCTTGAGT
CCAGAGATGATGTGCGGTCAATGACAAGGAATGTATCCAGGATGGATGGGCGGCTTAAAT
CCCATGGGGACTCAGTAGGAAAGCAAATGGTGATTCTTGAAGGTGAGAGAGCCATCTGAA
CCTTTAGACTCCCACTCGGCGAAATATTAGTTTTGGTAGTCAACTTACTCCTTTCTGTAT
CACCACGCATATGGAGTTTATGCTCTCCGTGCACCACATCAGACTCAATTTTACTGATAA
AATTCAGTAGCATGTGTACTGTATGGAAATGCACCCACCAAACTAATGGAGCCAAACAGA
TTGACAGTGAAGTTGAGCTTACTGAGTTACCCCCTCGATCTGTGCTACTAATAACATCAT
AATGGAATGTGGAATCACCAAATGTTTTAAGCAATTCAACCTTAGCTAGTTTACTTGAAT
TGTTCGAAGAGTATCCAGATGACTCCACCCAGTAATCTTGAGCAGCAAACGGGAATGGAG
GGAGAGCAGCTTGAACTTCATGGCAATAATCACTATTTAAGAAAGGAGCACTACCGGGTG
TGTGATCTGAATCATGCTTTTCAGTACTGTAGTATTCATCGAGCCTCATGTGGCCAATCG
ATGCTTTCAACCTCAAGTTTTTCGGATAAGTCTGCAGATATGAAGAAAAATATTTAGCAT
CAAGCTTCATGACACTTCAAATGATGTATTAACTTAGAACAATGCTGTTGGTGGCAGACC
ATACCTCAAGGTCAAGATGAATGTTTTGACACTTGTATTCAAGATGATGCATACTTAAAC
TGGAAGTGGAAGCAGGAGATATCATTGATTGCTCAAAATGAGCAGGAGAAAGGCAGCTTG
AAAACATTTCCGAACTTCTCATATCTTTGACGAGATTCAGAGGAATACTGGAACTACCAG
TAACCATTTCATCACTGAACAAAAGAATAATGCCTATCTGAGTAATGGAAGCCCGTAAGG
TTTTCTCAATCAGTGTTTCTGTTAGGAAAAAAAAACAAAATAAGTAATGCTATGATACAT
ATAAAAGTTAAATGGACAAAAAGTAAAGCACTACGGCCACTTGGTTTGATACTAGAAATT
GCAACATTAGCCGCCGTGGAAAGAGAATTGAAGGAAGCTGTTTCTTATTCATGAATCACA
AGTATGGATATCAGAAGGAGGTGATCTCAGAGTTGTCTAACAGGTCTGCTGTTGATCATA
AGCCAGCATAAATTCGAGATCTGAGAGTAGTTGGATTTTCGGCAAATTCCAATATTAAAG
TTCGTTCAATTTGGTGCTTACTCAAAATTTTGTTTTCAGTTAGTACGGCAGAGACAAAAT
TAACAAACCAGATGTCCCAGTTAATTTAAAAAGTACTGTTACGAAACAGCACCATCATAT
TACTGAGGGGTCAGCAATATGTCCCATCCTCATATCTATTAAGATGCTAGCAGGTACTCC
CTCCGTCCCACAATTCTTGTCTTAGATTTGTCTAAATATAAATGTATATAGTCATGTTTT
AGTATTTAGATACATCCATTTCTAAACAAAAGTAAGACAAGAATTTTGGGCGGAGGGAGT
ATAATATTTCTTATTCTCACCAAAAAAGCAAAGGCATAATTTTTTTTCTTGGAAGTGCGA
AACACAATTCAGCTAAATAAGGATGGTATTCAATAAAATCAAGAGTAAAAGGAAATGGTA
GCTGAAGGAGCAAAGTTAATACTGGTAGACAATTCATTCTGCAAGAAAGAGTATCACTAA
TTGATAACTAAGTAGAATAGAGAGCATAAATTGATAACAATGTAAGTATTTCATGATTCA
TGCAGGTAGAGTGGATAACATGTCTAACCAACAGAAAACTGAAAGATGTACAACAAAGTA
CAAACGGGTACCTTTAGGGACTTGATCGGATCCAGAAGCTAATGCAGATGCAAAAGTAAT
TGCATTGAATACCGAACACGTCCAGTCCCATATGCCACTATTTCCTAAATTAGTATGAGA
GCTCCTCAGTTCATCAAAGCATTCAAAGAACTGACTGATGCTGTCAAAGATGGAGAACAA
CAAGTTAGTAAACAATTATGTCAGTGTAAATATATTATTATTTTTCTCAGGTGACCTGCT
TCCCTTAAGAAATGTAAAAGCAAACAAATTCAACGAGAGATAAATTCTTACAAGAACTTA
AACAAAGACAAAAACATGGAAAACTTACAATAAATTCAAATAAGAAGATTGATGTATTTG
GCCATTAAATCCCAGGCTGCATACTAAAGATGCAGATAAACATTCTAACAACTCATGCCC
GATGCTGGTCGGTAAGTTGGGATGTTCATAAGACAAGATATTTCAGAGACAGTTGAAGAA
CTATCGCAAGAGGGCAAGAGCAACAAGTACACAAGGCAATGGCCACTCAAAGAAAAGTAG
TGAAAGAAGAAACTGACCATAAACCCCCAATGCATGCACAACACAGTGAGAAACTAGGGA
CCAATAATTCATAAAACCATCTGATTAAACAGTTTTTTATAATTTGTTTGAGAACAAAGG
GAGCAGCCCTTCTAATTTCTATTATCAGAAACCAGCATGCAGTTCAGTTACAGAGTTTAA
AAAGAATGACAGAAATAAAAGCAATGTGACACTGAAACAGCATCTTTTTATCTGTTCTGC
AATGACATAACAGGTACTCCCTCCGTCCCAAAATTCTTGTCCTGGATTTATTTAGATATG
AATGTATCTAGTCAAGTTTTAGTATTTGGAAACATTCATTTTTAAACAAAGCTAAGACAA
GAATTTTGGGACGGAGGGAGTATGTCACAAAATATACTACAGAAATGTTTATAAGAGATT
AATAATGTGTCCTGATGCAAATAAGAAGGTGACAGATACATAGGTAAAACGACTGTCAAA
AACCTTTGAAGAAACACAAACAAAGAAACAAACCTTTCATCACAATCTGAATCAAATTCA
CCTTGGTCACTGTTGACAACAAGATCCGGAATCCAGTCTTGAATCACATGTGCCTGTGCC
TTGTTGAGGTAACCATCCTGAAAATTATGTTGCCTGCTTCGAGAAAATGCTCTCTGTGAC
AAACCTTCACGGCTAGCTGTCGCAGAGGCTGAACCTGATTTCGAAGAGCTTGATGTGGAT
GCACATAAGGAAGCTCTGGAGGCGTTCATAGACATATCTGCAGTACTATGTACACAATTA
TGTTCATCTGCCGAGTTCCTACAAAGAGAATCATATACATCCATGAACCATTGGATACTG
CTCATCTGTAACTGCAATTCTAATGAATCAACAGATACGTCTGCATCAATTTTCTGAAAG
TTCAAGCATCCACTATTCCATGGGATGCTTAAGTTCAATGTTCCTGAGAATCCACCAATT
GGGCCTGTCAAGACCGCAGTAGTACTATGATTTGATGAAATGTCAGCTGTTCCTCTATCC
AAATCATTCTGAAGATTTGCATCAACATCATCCATCTTCAAAAACTCAATGACCGCCTCT
TGGAATGTTACCAAGTTATTCAATTTGACCGGACCCTCTGTTGAAAAATTGGTTCCGCAC
TGTATCTCTTTAGTTCGGAAAACTAGCGACCGATTAAATTCCAAGGCCCTTTTATCCAAA
AGGCTTTGAGGATCGAATACTACATACGTATTTCTCAACTTGATATTAAATCTTGTAAGA
AACTGCTTGATGGCGTTGGCTATTCTCTTCACACCATCGTCCACATCTCGAGATGCAGAA
GTAGAGCAGGGATTACTATCAGGTTCATTCCTCTTGGTCTCAGCCGATCTCGCCTCTGTA
TCACTATCACCACCAGAAACAGAGCACCCAGTATCTACAGGTGGGGCTTCACTAGCAACA
GATGGTGCAAGTACAAACTCCAACCCTTCCACTACAATCTCAATCTTCCAACTCCTTAAC
TGTAAAGGTAATTTAACTAGCAGGGATTTTATAGATCCTTCCTTAACTGTGATAGGAGAT
CCTGATAGCTGAAATAGAAAATAAAGTTAGCCACAAAATACGTAAAGAGAAGAGTGTAAA
CAGAAAATTAGCAGTCTAAAATAAAGTTGGCAGCATAACTTAGAATTCAACAACTACGAG
TGATCAAATCTAGCATATAGGCAGTGGTGTTATGCTTGTGAACTACAGGTTGTCACTGGG
GCAAGAACACGCGTATAAGATAGGAGTAAGTCCAGTGGTAAGTGCCACAACAAGTCATGT
TCGAAGAACAAAACTAGACACCAAGGAGTGCAGCTCGGTTAGAGCCAATGCAACATATTT
CAAGTTAGTCCGACTCGATTAAATGAACTGCAGCTTCTCCCAAAACTAACACTCTTTTTA
GAAAATGGAAGCTTTCATTACCTTTGGCCTTTGCATCATTGTCACCAAACATTTATTATT
ATAATGTTTATTATGAAGTCACCAAACAATGCATATATAGTTATAAACAGCCTAATTATT
ATAACGTTTATTACAAAGTCACAAATGTCAATGGAAGCTTTCATTACCTTCGGCCTCTGC
ATCATTGTCACCAAACATTTATTATAACTACAAACGTGTTCGATTATTATACTACCTCTG
TCATGGTTTAGAAGGCACAGTTAAATTTACGTGCATTTTCACAATAGACAAGGTTTAAGG
CGCGTTGCATTACTCCTAGCAGCTAATTAGTACTCCGTTGTACTACTT