| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
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Predicted Genes from contig_135384
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_4671 |
2 |
2902 bp |
MLOC_4671.1 |
Available |
Available |
LOC_Os06g43790.1, FRAME:-2, EVALUE:0.0, 13106.m04589 protein transcription initiation factor TFIID subunit 1, putative, expressed |
| MLOC_4670 |
4 |
2401 bp |
MLOC_4670.2 |
Available |
Available |
LOC_Os01g44230.1, FRAME:+3, EVALUE:0.0, 13101.m04585 protein transcription factor X1, putative, expressed |
CDS Structure of MLOC_4671
CDS Structure of MLOC_4670
Contig Sequence (7655 bp)
>contig_135384 7655 assembly3_WGSMorex_rbca.fasta
CTAGCCGCCGCCGCCGCCGCCGCCCCCCACCAGCCGGGCTTCTTCTCCTCCTCCCCGACC
CCGGGTTCCTTCTCTGCCTCGGCGACCCAAAGGTGAGCATGCGCTGGTGGATGCGTTAGG
CAGATCTCCCGAGTAGGCCTCCAACTCACATTTCAGAGACGGCGATTTCTTGCTGTATTC
ATTCAACACTTGTTGTTGCTTCTTCTCTTAATGGTCTGAACATGTGATGCCTAAAATCCA
GAAGTTCCTGATCTGGTTTCGCCCTCCAAATTCCTTTTGCATACTCTTACTACTATTCTG
TTCTCAGTCACTGTTTCCGGCAGGTTGTCAAAAAAAAAAAAAATCCTTCTCGGAGATGGA
ATACAGCTCAGACGACGATTCGGATATCAGCGACTCCGAGATCGACGAGTACGAAGGCAA
GATTAACGCCCGTCTGATTTCAGGAGACTTAAAGTTCAGGAATGGCGATAGCTACGGTTG
CCCATTCTGCACTGGCAAGAAGAACAAAGGTTACAACATGCAGAGCCTTCTTCAGCATTC
CTCGGGGGTAGGCGCAGCGCCTAATCGGCCGGCAAAAGATAAAGCGTCGCACCGCGCCCT
CGCCAAGCATTTGAAGAATGACGTTGCTAAACCTTCTGAGCCACAGCAACAGCAGCCGCA
GCAGATTGTTGTGGAGCCGCAGCCTCTTCCAAACAGACATGAGAAGTTTGTGTGGCCCTG
GATGGGTGTTCTAGTTAATGTACCTACTGAATGGAAGGACGGGCGTCAGGTTGGAGAAAG
TGGTACTCGTTTGAAGGGGGAGCTGTCGCAATTTTGCCCGCTGAAGGTTATTCCTCTATG
GAATTTCCGAGGCCATACAGGGAATGCTATTGTTGAGTTTGCAAAAGACTGGAATGGTTT
CAGAAATGCACTTGCATTTGAACAGTACTTTGAGGCAGGCGGCTGTGGCAGAAGGGACTG
GAAGCAAAACCAGAATCAGGGGTCAAAGCTTTTTGGATGGGTTGCAAGGGCTGAAGACTA
CAATCTTTCGGGGCTAATCGGGGACCACTTAAGGAAAAATGCTGACTTGAAAACTATCGA
TGACCTTGAGAATGAAGGAACACGCAAAAATAATAAACTTGTAGCTAATTTGGCTAACCA
AATTGAGGTCAAGAATAAGTATTTAGAGGAGCTTGAACTTAGATACAATGAGACAACTGC
GTCACTTGAGAAGATGATGGGGCAAAGGGAACAACGTCTCCAAGCGTATAATGAAGGTTT
GTGTTAATATTTTATAGTCATTTCTTCTATATTGTACATGTGTCAAGATGCATGGTCTTC
TGTCATCAGCATCTTTGTGTTTTCAGTTATCATTAATACTCAATAAAACTTGTTACTACT
AGAAATTCGGAAGATGCAGCAGCTAGCTCGCAGACATTCTGAAAGAATTATTGATGAGAA
CCAAAATCTGCGTTCGGAACTGGAGTCCAAGATGAGTGAACTTAATGAAAGATCCAAAGA
GCTTGATGACCTTTCTGCAAAAAGTTCTCATGACAGAAGTAATCTTGAGCAGGAGAAGCA
GAAGGTCTGTGATTTTCTTGGCTCGGCATCTCATCTATTTTGCATCATCTTTAAACCTTT
TGAAGTAGATCCAAGTGGCCCCAGTAACCCCGATATGTAGTGTTGAGCGCTTCGTGGGTG
CATCAGACCAATACATATCTGAGTTAACGAAGATCACTCATAATACTAGTTCATAAGATT
ATCGGTCTGGCATCATTTTACATACTGTACTAAGGCACTAAAGTGCACAAGATTAGGTCC
TGTTGCTTAGAAATATGCGTTCAACTTACTTTTTTTTATTTGCTTGAACTCAGAATGCTA
TTAAATCAAACCATCTTAAGTTGGCAACAGTGGAACAACAGAGAGCTAATGAGGATGTGG
TGAAGCTTGTGAGAGATCAGAAGGTATACTGTCCTTGTTCTTTTTGTGTGATATGATGGT
TTGATTTTTTGAACAATATGTCTTGCATCTTAGTCTTACTCTATGGAAACTGCAGAGAGA
GAAAGTTGCTGCATTAAACAAGATCCTGGAGTTAGAACAGCAGTTGGAGGCAAAACAGAC
GCTTGAACTGGAAATACAGCAGCTGAAGGGCAAATTGGAAGTGATGAAGCATATGCCAGG
TCATGAAGATTCAGAGGCGAAGGATAAAATCAATCAACTTAGTGAGGAGCTGCAAGATAA
GATGGATGAACTGGATGCTATGGAGTCACTTAACCAAACTCTGGTTATTAAAGAAAGCAA
AAGCAATACTGAGATGCAAGAAGCTCGGAAGGAGCTGGAAAATGTATATTCATTTTAATT
CATTCAAACTGCGATGCGTATAGTGCTCTATGTTGCTTCAGCGACGTGATCTATCTACCT
ACTTAATTCTTCAGATCTTGTTTAATCTTCTCATCTACTGCATGTTCCACAGGGCTTGCT
TAATCTTCCAGGCGGCGGAGCACATATAGGAATTAAGAGAATGGGCGAGCTTGATCTGAA
AGCATTTTCAAATGCTCTCGGACAGAAGTTGTCGAAAGAGGAAGCAGAAGTTACTGCTGC
CATTCTTTGTTCAAAGTGGGAAGCTGAAATTAGGAATCCAGAATGGCACCCTTTTAGGAC
TGTCATGGTTGACGGAAAGGAAGTGGTATGAATCTTCATTCGTAAAACTCCACTGCTTGC
ACATGCCTGAGTAGTTTGCTAGTGTTGAGTTACTAGTGGTACAAAACTTTCCTGACATTT
GCTTATACATTTTTGGATTTCTTCTCTTGCAATATTTTGTCATTGCTTTTTAATGGTTGT
GTTTTAGTTGTGTAATTGCTTTAAGTTAGTGCAGTTTGATCATTTTGGATATCGTTAAAC
CTCTTGTTCCACTATACTGTGCTAGTTCACAGTAATTCCGTAGCCACGGTAGGGTATGGT
CCATCTTAAATGTTGGCTCCTATGCTATCATAATGTGTTATTTACTAATGGTATCCTGGG
AATCATTTTCCTGCAAGTCTCATTACCTGGGTTATCTTGTTTTACTGTAATAATGATGTG
TGAATGCTGCATTTTAGGAGAAAATCGATGCTGATGACACTAAGCTTCAAGAATTAAAAG
ATGAGCATGGCCAAGAAATCTATTCGTTGGTGACCAAGGCGCTGCGTGAGTACAACGCCA
ATAGCACCAGGTATCCCGTAGGAGAGCTGTGGAACTTCAGAGAAGAACGGAAGGCGTCTC
TCAAGGAAGCCGTTCAGGTGGTCCTGAGGCAGTGGCGAACCACCAGGAGGAAGCGTTGAT
TGAGCCCAACCAATGTCGATTCTTTCCTCCTCGTATGGACATCGACATTAGCGGTGTGGT
TTGATAAAATCTCTAGTGGCTATGTACGCCCATGTTGGATATAAGTTGAATAATAAATAA
TCCTGTTGTTTCAGTAGTAGTAGCATTAGTGAAGTATCTATCCATCTGTGTAAACAAGCT
TGAATAAAGACTTGGAGTAGTATCAGCACCTGCAAGCACGCTATCAACCCGATCATCGGT
GTCTGTTGGTAAGCGCCGCTGTATGCTTTGTTTCTGAGTTGCTGATAGTAATTCAGAGGA
GTGTTTGTTTGTTGCCTGAATTAATGGTGACCTCCTGTACCAAGTATAGATACAGGAATG
CATGAATTAGCACATCCACCTAAATACAATGATGCAAGTTACTGTGAGGCAACATTGATC
TCCAATGAATAGAGAGGTACTATTTGAGAGTAAAAAAAAATCATTCTATGCCAAGGGGAA
AAGGTACGGGGTAACATTTGTAAAAGATGGATTACCTCCCTATTACATCACCAGCCATAT
TAATCTGAAAGCGTAGACATCTCATTCAGCATCTCAAATAATGTTGGGAGTACACAAGCA
GGTAAGCAACTTGTAATACCTGAAGATAAACAATATTAAAGTAGCTGTTTGCCTTCACTA
ACAGCTACTGATTCAAACCTCAGTCAACATATGTATTTTGGGTTTGGATAAAGTTAATAC
TAGTTCAACAACCTTTATACGAATAAAATTGGCAACAGAGGACCCCCAAAGAATAGTTGC
TTTGTTGCATCTATATCCATATGGACCAATATCATCCGCACAGGATGCACAACTACAACA
GCTGAATATTGACAAAGTTATACAGCTACTTTTTTTACAACAATAGGCCGAATAGTTACA
GCGGGCCCTCGATGACTAACCTACAGCTAGTGTACACTCCGACTCCCGATGCCTGGTAGC
AACAACCAGGCAAAACAGCTGGGACTGGGATCACATGTGCCTCCATGCGATCGCCGGAAC
CTAAACCACATGTACAGGTGCGCTTTCCCCAACCTCGCTACCGATCAGCAGGTACAGCAA
TCTATGTTAGGACACGGCGTCGCCATATCTTTGTTATTGTGCTAGCTCTCCATTGCGCTC
TCGGCGTCGTCAAGCACGTCTGCGCTTTCATCAAGAAGGTGGTCGCACAGCTCCAGGAGC
TCGTCGGCCAGTGGAGGGATGTGAGGATGCCGCGTCTCGTTGTACATGTGCGCATTGTCT
GCTATCTGCGCCACGTCATTCCTGAATTCGTACCTGTTTTTGTACTCCATCTTCCTCGCC
TTGTCCCTGATGGTACCCAGATCCATTGGGCGCTGGATTACATCGTAGTAATCGGGAGCG
ACTTTCTTTGTCACTGGTTTAAGAAACAGCAATGATATAGCAGTTTGGTTCCGCAAGTGG
TCAACTATCTTCTCCAATATGTTGGAGAGCTCAACCTGCATCAGGATGCAAACAAGTTCA
GTACACCTTTCAAAAAAAAGTTCAGTTAAAATTTCTAGTCTAGCAAAGAAACAAACATCA
ATCGACTCTGTTTTGTCTTTCAAAAAAATTGTGGCATCCCTATCTTGTGTGTAGAGACTG
CTACTAGGAACTGGTTGAATAACAAAATGGTGTACGATGATGTTCAACACAATGATTAAA
ATGGGAAATTTGAGAATGGAAAATAAAATAGACAGGGCACATGATCCAAGGATTTTCTAT
ACTGCTGTGGTTTCATCTCTTCACAGATAAACATGTTATTGAGCTGAGGTCATACATTTG
AGTGTGACTGTTTCGATGAGAAAAAGATATGGATAATTGCCAGAAGAAGAAAACAAAAGG
ACTTTCATATAATTATTGGTAGGCCCTTAAATTTCTGCAATTCATTGAAGTGTGCCTACA
AGTAACTCTTCTTGTAAAGCAGAATCAGTAAAATGGTCGTAGAGAAACATTATTAAAACA
ATGGACATTCCACCAAACATGAGTGAAAACAAGTACCTCTCCTCCTCTGCGCCGCTTGGC
TGATGGAGCATATTCTGTCATATCAGCTGGAGTACGTCTCTTTGATGCTCGATCTCTTTC
AGGTACCTTTCTGTCATTTCTGTATGGCCTGTGATCAAGAATGTCAGCATCTCGAAATTC
ATGTTTTTTCTTTTTCTTGCTTTTTTTCTTTGCCTTCTGGAGCTCTTCCTCCCTGCTATA
AATCCTAGCTTCAATTAGCCTCTGTTCCTGTCTCTCTCGCATCTCTTTAAAAGCTCTCCA
GGATTCATCACCTCCCGTTACTTCTTTGCTTTTCCTGTTACCATCCCGGCCTAACCTATC
ATGTGAAGAATTCATCTGGCTGGGCTCTCCAGCATACCAACCATCATCATCTCTGCTGTT
CTTCTCAAAACTTGACAATTCAGCAATTTTCCTTATTTTTCTAGGCTCCTGACCAGTGTG
ACCACTCCTAACTTCAATAGCTCTTAGCTGGTCTACATGTCCTTTAGGCTGCTTTATAAT
GACCTTCTTGCGAGGTACATCCTTCTCTACTTCAGCAGGAGGCCGTATCACAACTGATGG
CTTAGGAGTATCAGGAGGATAATCTTCAGTCTTAGGCTTACTGTATATCTTAATCTTGCT
AACCTTTCCAGTAGATCTCAAATCTGTAGCATCCATTGTAAGTTTATCAGAAACCAAAGA
ACCTGCCACTGACATATTCCTTTCCAAGGACTTCTCAGGTGCCCCACATCTGAATTTTAC
TGGTTTGATCTTTTCAATGCTTTCTTGCCCTTCAGTTTCAGGGACATCAGAAGAAACCTT
GGCTACCAACCTCCTGCCCTGTGTCTTTGTTTGAACATGACTTGCTACATCAAGAGGATT
AGATCTGTAGGAAATCGCATCCATTTCCGAGGTTTCTGGATCCTCCCCATACTTGGGGCA
CAGTTTGTTGGTCCGCATGTGTCCAAGCTATAATAGCAATGTGACACACAAAGTCAGGAG
GAAATTCAGAACATGTGAGTAACTGAATGTACTATGATGCCTTACCTGTCCACAAGCTCC
ACATACAAGACTGTCCCCCCTTGCTCCCTGCCTCTTCTCCTTAAAATAAGAGAAGACAAG
CCACATAAGAATAACGAAGAGGAGATATGATCATTGCTATAAATGCAACTCTTAGTTCAA
GTCAATAAGTTGAAACCATGAACCATATGTTCCTCGATACAAGAATTCAATTTGGTTAGT
CTAAGTAGTAGGAGTAAGTTGCAACATTCACACTAACTTAGAGCTATCTGGAAGCCAAAA
AAGAAAACCCTACAACAGTATTACCGTCACTGAATCGTCACGAGAATACAAACATGGCAC
CTCACTAACTTATCAGCTAGTCATTGTGCAGTCTAGTAAACAGGACATCATCAGTATAAA
CTTACTGCACTTCTAGATGTCACTGCCTAGCAAAATGAACTGATCCAGACCCATTAATAT
TTACTTAGTGTGTGGATGAATTTACAGTACCTAAATGGACAGCTCTGAAAAATTGGCCAG
ATTAATAAAGGTAAGCCAGATTTCAAACATGGGTTTGTATCCATTGTGAAGTTTGCTTAT
TATGATGTAAAGGCATCAAAAGTACCTCTAACTTATAATAATCGACTAAAATAAGAAGAC
AAGCTTACCAAAATATCTAACTTTTCAACAATTTGTGACATTTCCTTTCAAATTTTGTTA
TATATTTTGTGAGAAAATTGCAGAAGCCACCAACTATTTGGGGCTGGTTTTGCACAGAAC
ATAAGAATAATTGCAGAAACCTACTCTACAGGTTTGTTGCACAAGACACCACCTATCGGT
GTAAGTTTGGCTTGGGTGACAAGATTCCTGGTCGGTGGGTCCTGCTTGTAAGTATGCATG
TGGCAAATGAAAAAGCCACATCAGCTGGTCATTTTTTTAATGAGCCAACTAAATCTGCCA
ATATCTCTCAAAACTGTGGTCCAAATGAGCTGAAATTTTTCTAGATCAGTACTGGGTACA
TGTATGATTTACTGGATTTTTTCCTTTCTTTTAATCTTGATTTTGAACCACAAAAGCGAA
TGAGCCAACTAATACTGCCAATATCCCCCAAACCTGTGGTCCAAATGAGCTAAAAAAGTT
CCAGGTCAGCACTGAGTACATGTATGACTAACTGGATTTTTTGTATCTTATTTAAATTTG
AATTTTGAACCAAAAACTTGAACGAGCCTGTTAGGAATAAGCAACTTGTATTNNNNNNNN
NNNNNNGGCCGATATATATACATGTACAGGTTATGGACTATATGCAGGAAAACCCCTTAT
ATATTGGGATAAATACAAAAGGGTACATGAGTTGT
