morexGenes - Barley RNA-seq Database

Contig contig_135340
Source Contig contig_135340
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_135340 (6756 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location
Predicted Genes from contig_135340

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_4631	1	1682 bp	MLOC_4631.1	Available	Available	LOC_Os04g51100.1, FRAME:+3, EVALUE:0.0, 13104.m05197 protein COBW domain containing protein, putative, expressed
MLOC_4632	2	645 bp	AK354763	Not available	Available	None
CDS Structure of MLOC_4631

CDS Structure of MLOC_4632

Contig Sequence (6756 bp)

>contig_135340 6756 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGGGGGGGGTGACACTGGGGTAAGCTAATGTGAGCGCTTCTCCCATCCTCC
TTCAAAAACCAACACCGGGCGACCTCTCCTCTCCGGATGGCTGGTTGCCCCTGGCCGGCT
GTGCAGTTGAGCCTGCTCGGGGCAAGGCCATTCTCCATCCGGCTCGACTACGTCCAGCGA
GTCGGATGGGTCAGCCCTAGTCACATCACCCTAACAAGCGCGTCGGGGGCACATCATCAA
AGGCATGGCTACAAAGGCTTAGGTACCACTGACCTGACCGCGCGTGGTAATAATGGAGGC
GGTCGTACCACTGACCCTCGCCGACTGCGACCGGTCGAGGCGGCACAGTGGCAGCATGCC
CGTCATCCACTGTATTACCTGCCCCCGCGTGGCTACAATGCAGCCGGCCGTATCGCTGAC
TACAACCGGCTACCACAAGACGACACTGCACAGTGCGGCGCACGCACCAATGGCGGCCAC
TGGCCGGCGGGTCCCAGCTCCTGGCGGGCCCCTATGCGTGATAAGATTCCTCAACCGATG
GGCCCCCTGGCCGGCTAGAGAGACTGCTAGTTGGGTCCCCCCGGTACCCTTTATTCTTAT
TGTAGGCTAGGGGTTGGCCTAATAAACCCCTGGTACCGCCCCATGCAAGGGGTTGGCCGA
TCACGCGCGCATACACCCATACAGAAGAGGCAGAAGGCTACCAGCTTCTTCTTCATCCGC
CGCCGCACAGCTCAAGGAGCACCATTGTAATCCCATCCGGTTCATCAACCAAACTACCAG
GACTAGGGGTGTTACATCCCACGAAGGACCCCAAACCTGGATACATCGTGTGTCTCGCAC
CGCTTGTCCTCGATCCCATTTCCAGAGCCCGCCGGCGTCCTTACGGCCCCAACCACTCTC
GATAGGTCATCCCATGGCATATGTTGTGAGAAAACGACGACAACGTCGGGAGAAACCGAA
GGGCACACGAGAAGGTTGGGTTGGTGCCACGCTCATGATGCGATAACATATACATAATCA
TTCTATTTTCTTTGAACTTACAAAATGAACGAGGTCTTTTTGGATGATATGTAATTTTTT
TTATGGAGTCAGAATGTTAGAAAAAAAATCCAGAGAATGGCTATTTACCTTTCTTGAGGG
AGAGAATGGCTATTTACTTTAAAATAACAGGTTTGATAAAAAAAATTACAAGATGTTAAA
AAAATATGGCAAAGATGCATATAGCCTTGCTCTAGTCCACTGTCCACGTCTCCACGAAAC
GTCGAGACCCAAGAAAACCCCACGGCGGCCGCCCAGCTCTCCGGGAGTTCAGGTATGGCG
GCTGCGGCTGCGCGGCTGCTGCTCCCCAGGGCGACCAGAGCCGCGGCCTCCTCCTCCGCT
CTTCCCCACCGCCCTCTCGATTCCTTCTCCAGATGCTTCCGAAGCCTCGGGCCGCCCCTC
CGGCGGCCGCCGGCCGCCGTCTTCCCGCGGCACCTCTCCGACGCTGCCTTCGACGCGCAG
GGGCTGGACAACCGCGTCCCCGCTACCGTCATCACTGGCTTCCTCGGCTCCGGCAAGGTC
CGCCTCGCTTACTCACCTTTCCCCTTGTAAAGTCTTACTAGCTGGAGCGGTAGGCTATAG
AAGCCTGTCTAGTCTGAAGTCTGAACTCAAACTCACTGCATACTCTTTTCTGCTCGACCA
ATGTATGATCCGACTGTCCAGTCATGGCGCAGCTGATGTTAATATGAATTCGGATTTGAG
AAACAGACACGCTATTGGTAAAACAGTACAGCCGGCGTGGATTTAAACCCATAGAATGTG
CTCACTGCCATGGTGATATAATAATCTCGTATAGGACTGATGCTTTTTTTTACTAAGGTT
GGCTAATTGTTTTCAATCTCTCTGTCGCAGACAACCCTTCTGAACCACATTCTAACATCA
CAGCATGGGAAGAGGATTGCTGTCATTGAGAATGAGGTTAACTGAAGATCCTTATTTCTT
GTAGCACTTTGTTATTCCAAGTCAATATTGTTCGAGATTGTGTTTTGCAATGTATCGATA
GTGCACCAAATCAGCTCCATTTAACATGCCAAGATTCCCTTGTACTATGTCGAATAAGCC
ATATTGTCCTTTTGTGTGCAGTTTGGTGAGGTGGACATCGATAGCTCACTTGTGGCTAAC
CATTCATCGGTAGCTGAAGACATTGTGATGGTGAATAATGGCTGCTTGTGCTGCACTGTC
AGAGGGGATCTTGTAAAGATGCTTCTGAAGCTGGTGAAGCAAAAGGGCGACAAATTTGAT
CATATCGTGATTGAGACAACAGGTAAAATCTCATTGGTTCAACATCTACCAGACTACCAG
AAATTTCAGTCTGAAGATGTGTGAAGTTCTAAAGTCTGACAAGAACTAATGTCGCTGTCC
AGGTCTTGCAAAGCCTGGTCCTGTTATTGAGACATTTTGTTCTGATGAATTAGTCTCGAA
ATATGTGAAACTTGATGGTGTGGTTACTTTGGTTGATTGTAAGCATGCCATGCAACATTT
GAATGAAGTGAAAGCAAGGTGGGTTGTCAACGAGGCAGTAGAACAAGTTGCTTATGCAGA
CCGGATTATATTGAACAAGGTATTTAGTCAGTCTATAGAACTGTACACAAGGCTCGGGAG
CCAAAAAAGTATCATTTAAGCATGTCTTTTTCTGCATTTTCTTCTTCAAGAATACAGCAT
AAAAGTCTTCTTGCTTTTTTAATGCTCCATAATTGCTATCAATGCAGACTGATTTGGTTG
ATGAGGCAGAACTGGAGGTTTTAACCAACAAGATCAAGGTAGGTTGGTACAGTGCCTTTA
GAAAATAGATTTTTTTTGTCAAGTGCAAACTTATTTCGTTTTGCACAAGCTGAAAAGTTT
CCTCGTTGCAGCTCATAAATGGGATGGCAGAAATGAAAAAAGCAAAGTTTGGTGATGTCG
ACATGGATTTTGTGCTAGGAATTGGCGGTTATGACCTTGATAGGTCAGTATCATTACTTT
CTAGCGGGTTAAGAATCTTGGGCTGTATTCCTGAGAGTCAGGTGTCATATCTTTTTTCTT
TAATTGAGATAAAAAATATATCTGCAGGGTTGAGGCTGCAGTTCAATTGAATGAAAACAA
AGAGACAGGTCATTGCCACTCGGGACACGATCATGGTAGTGTTCAAGCTCCAATATCCAT
GTGTTCTGAATCTCACCATATTAGAGACATGCTAACTTTTATATCTAGGGCTTAAGACAA
CATTTAGTGTCTTCCTTTTGGATTTTTACCTTTTATCAAAAACAAGAAAATGATGGAGAC
GGATAAATTCCCAGTAATTGAGATGACACCCAGACTTGCAGTTTACTCTAGTTTCCTGTA
TGCATTCATTTTTTATTCAACCTTCTCCTTCTTTCAGTCTATTCAGTTTACTTTGCTGAC
TTGTAGGACACCATCATGACCATGTCCATGATTCAGCTGTTACTAGTGTAAGTATTGTTT
CTGAAGGAGTACTTGATCTTGATGAGGTAAACAAATATGTTGATGAATTGCTTGAAATAT
TGTTCTTCCTTTGAGTACCATACTTTTCCTCAGTCAATGACCTAATTTGCCACTAATATC
TTTTCAAGGTTAATGATTGGCTGGAGAGACTGGTTGATGAGAAAGGCGAAGATCTGTACA
GGCTAAAGGGTGTGATATCCGTCAACGAGTCAACTGGACGCTTCGTGTTTCAGGTTAGCC
AGCCAAACTTTTCACTGGCAAATGAACTAGTTTATCATCTTCTGTTATCCCTTTGCTTGA
ACGAAGTTGATCCGTGTGATCAGAGCTATGTGTTGTGAACTTTTGACTGTCCTTCTGTTG
CCACATAAAAGCTTTTGCTCCGGTGCCTCTGCAGTTCTGCCTGTTCTAATACATGCCATC
CCGACGCTAACTCCTACTTGGAATCGCAGGGCGTGCACTCCATGTTGGAAGGTTGCCCAG
CAAAGCCGTGGGAGGATGATGAGAAGAGGATCAGCAAGCTCGTGTTTATCGGCAGGAATC
TGGACGAAGCCGCGCTAAGGAAGGCCTTCAAAGGTTGCCTGCTATGATGAACCCTCTGAT
CATGCGTTTATCATTGGGATCGTGGTCGAGTCTGAGAATGACTATAGGCAAGTAAACAGG
CGAAACGGACAAGCGCAAGGCCCTATGTTTTCGTTTGGTGTTGATGTTTGCCCTAGAGTT
CTCTGAGAAACCGAGTACTGTATCTTGTAGGCTAGGCTAGAAGTAGAAAATCGAATTGTG
TGGTACCCTTGTCTTGATGAGAACCATACATGTATGCCGTTGTACTTTTCTTGCGATTTA
GGTTGAAATGGAAACCATGAAGAGTTTCTTTTTTTTTTGCGGGAAACCATGAAGAGTTTC
TGGTGATGAAACTAGAGAGAGAATTCATGTGTCAGCTCAGCCGTGTGGAACTCTGAATAC
GTACATGCCTTTGCCATGTCTTGGATGTCATTCTATTGGAATTTGGCTGTGTGACCGGCT
CTATTTACCTCCAAATACAGGACATTTTGCAAAAAGGAAAGGAAGAGGCCCTCTTATCTG
GTTGACGATCGCTGGGAGGGGGTGACATTTGCGAGCGTTTTCGTGACAGTTTTAGTTGTG
TGTGGGGTGACAGTTTCTTCCGAGCGAATGAGCCATCCTCCCAGAAAATGGCATGTAGCT
TTGAAGAAACTGCCACCTCTGATACCTAAAACTGTCTGCAAAAAACCGTTTGAAATGCCA
TACTCTCCCAGCGAACGTCTACCAGATAAATTTTTTAATAAAAGGGCTTTACATGAATTT
TCTCGTGTAACAGGTTTGTCCAGCTCCGGACCTGAAGTCGCCACACGTTTCATTCCATTC
GGCCTAACGAGCATGCCACGAATCCAAAACCAGTATCTCACATGAATTTTACAAGAATTT
TACAAGAAAACAGTAAAAATCTCCCACAACGAAAACAATTTCGAAGCAAACATCCGAATT
CCGCGAGACAATGTTCTACTCCTACTATATGGAATGGAAAATGCTCCGCTCCAGCCGGCT
GATTCTTGAAAGAAATCCGCCTCGGCTGGGTGCCACGTGTCCTGGTGTGGACCATGCACT
GGTTGAGAGTCGTTCGCCTAGGGAGGGGAACTGGGTCCCATTTAATCCCATTTAAACCCA
CCTATTATCTAGTAGTAGTTCAAAATTTTGTTTTCTTTCCGAGTAAAATGAACTATGAAG
CTAGAAAAAGCTAAATAAATGGAACTTGTGGCTGCCACTTATTTGTCATTTACATCCCTA
TGTTCGCCTCCAACCTTATCTCTTCACTCTATCTCCTACCTTTCTCCTTCACCTACATCT
TCCCTAATTGCCAAGCTATTTGCAGCTACTCAGGGCATACCTTGATTGCTGTTGCTGAAG
GGGATATAAGGGGCACCTAAGTGCTTCAAGGGACACGTGCGCCGCTGTTATGGAGACGTT
GGGGATGGGGCAAGTGCACTGCATGTCGCCGCCATAGCATGCGTGCTTCATCAGTCCATC
CTCGGATACATCATGAGATCCGTTCGTCAGGATTACAACATAATCGGTGTTGCGGAAACA
TAGACAATGTTGCAGAAACATAGATGCTTCGGAAACACCCCTCGTGCTTCAACGACAACG
GTGGGATGTCATTGAAACATGGCCTATGTTGCAGAAGTCCATAAGACTACGAAACAAATC
CGCAACACGAGCTCTGTTGCAAAAATCTGCATCACAATTTTATTGTAAATGTTTCTGCAA
CATGAGCTTTATTGAAAAGCTTATGTAACACTATTTTTTGTTACAATGATGAGTACGAGG
CTGATCTAAAAAGATCGAGCTTTGCTACACATACAAGAGGGTTACGGGATGAGGGGATTA
CAGGATGTCATGGCAGGGTCTAATCGATCAATAGCAGAGACATGGGCTAACCCCCGTTGA
AATCAGGGAGGGCATGTTTAAAAAGTTTGGAAGAAACCTATAGTAAAAACATGTCTAGCA
TTTTTGAAAAAGATCCATCGGCAGATGTGTAGCAAGCCCATATGGAATTCTGCACGGGAG
AACGAGTATTGCAGCAGACGTGGCGGGCGCTGATTGGCCGTGTGGCCTACGCGGCTACCC
GTGCCATCTCCAGAGAAAACGCGGTGCCGGTGGGTGCCGATTTTCCCAACGGCTATATTA
TTTACACCCTTCCTTCTTCGCCTCCTGCCGAACCACTATTTCCATCCCACGGATCCTCCA
ACTACTCCCCCGCCCCTCAGAGAAACACAACTCCGCCGCACCAGATCAACCCGCCGCGAG
CGAACGAGTCCGCCGCGCGCTCGGCCGTGGGGAACGCCGGCCGCCTCGACCGCGCTCAGA
GCTCCGCAGGACCCTCTCCTTCTCTCCCGCTCACAGCTCGTTTTTTTTTCTTGTTGTTGT
CGTTGTTATCACTGATTGCGATCTCGATTCTTGATTCTCGTCCGCGTCCGCGCTGCTAAT
CCCGACGTGTTCTTTCTTTTGGTAGAAAATCGGACCCTCTCCGCGTTAGGGTTTTCCGTT
ACATACTCGTCTGCCTGCGAATCCATTGCTCGATCTAGGGTTATTGCCTCCGCGCCGATC
CATACCGCCGCCGTTTCTTGTTTGTTCTGATCCATCGACGCAGGTTCCTACTTGATGTCG
CCGGAGAAGAGCGGCAGGCGGGGCGCGCCCGGCGCGCGGCCGCCCCCCCGGGGGGCCGGC
CCGGCGCCCCCCGCTCCGCCGCTGCTCCCACGCGCC