morexGenes - Barley RNA-seq Database

Contig contig_135294
Source Contig contig_135294
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_135294 (9508 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_135294

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_4585	2	2523 bp	MLOC_4585.2	Available	Available	LOC_Os02g10630.1, FRAME:+3, EVALUE:0.0, 13102.m01185 protein GRAM and C2 domains containing protein, putative, expressed
MLOC_4586	2	2218 bp	MLOC_4586.1	Available	Available	LOC_Os01g73950.2, FRAME:-3, EVALUE:1e-84, 13101.m08077 protein PPR repeat containing protein, expressed
CDS Structure of MLOC_4585

CDS Structure of MLOC_4586

Contig Sequence (9508 bp)

>contig_135294 9508 assembly3_WGSMorex_rbca.fasta
CCCAAGCGCCACGAGACAAACGCCTCTCCAATTCAAACGGTCGCGGGCAATCCTCTGCCC
CGCCTTCTCCTTGTATTTCGACGGGGCGAAGCAGCGAGGTCGCCGTCCGCCATTGCTCTC
CCGCCTCCCCCTTCCCCTCCTCCAAGGTCGCCGCGATGGGCGCGGTGTCGCGCCCGGAGC
CGGCCCAGCGGAGCGCCCCGATGCGGCTGTGCGTGCACGTGCTGGAGGCGCGGGGGCTTC
CCGCCATCTACCTCAACGGCTCCAGCGACCCCTACGTGCGCCTGCAGCTCGGGAGGCGGC
GGGCCAAGACGACGGTGGTCAAGCGGAGCCTCAGCCCCGTCTGGGACGAGGAGTTCGGCT
TCCTCGTCGCCGACGTCGCCGAGGAGCTCGTCGTCTCCGTGCTCAACGAGAACAGGTTCT
TCAGCACCGACTTCCTCGGCCGGGTCAAGGTGCCGCTCTCCACCATCCTCGAGACGGAGG
ACCACTCGCTCGGCACCGCCTGGTACCAGCTCCACCCCAAGAGCAGCAAGCCCAGGAGCA
AAAAACGCGGTACGTACGTAGGTATAATCTTCATTCGTCGTCGCGTTTCGCGAGCCCGAC
ATGTTTGATTGCCTTCGATGTTTCCGAAATAGTAGATGATTTATTACTGAAGATGAGATT
GCAAGCCTGAAATGTATAATAATTAAGCTACCTACCAAATTGAGCATGGAAGGTTAGTTC
CTGTCCTGTTTGTGTGTGGGTGGAAGGGAGTGCCCCATCCCCCATGTGCTGTTCAAATCG
GGTGTCGGAGGTTTTAGAAGTAGGAAATTTCTCCGACAAGTTTGCAAAGGTGTGCATGCT
CATGGAATTTTAAGGAGTCTCAATCTACTGAATTTGCATCGGTATTCACAAGTACTAGCT
GCTATCCCACAAAATGCTTAATGATAAGGTCAATTGAAACTCTCTGGTAATCTCTGTGTA
GCTGAACCTAAACGATAAAGGTAAGCATTGCTCACTATTTAATTTGATTTTGCAGGTGAA
ATTTGCCTGAAGATATACCTATCGGTTAGGGACGGCCACTGCAATGAGTCACAAAACATT
CTGATGCAACTTATCAACGATACGCCGTGCAGCTCAACTAGGTCACTCGAAACTAATGCC
TCATCCTTATCAGCAGTTACTAGCAGCCTGGATCAATCAGCCTGCACTAGCATGGACCAC
GCATTCTACCGTAGTGGTGTGGATCAGCTGACCCAAAGCAGCACGAACCAAAATGTCCCG
AGCAGCACACAGCAATCTGTTATTCTGGAGCCGGAAGAGGATGAAGGCGACGCTACCGGC
AATGCATCATCAGTAGTGGAGGTCTTGGCTCGATACTTCCGTATAGGTACTGATACCGGA
CCTTCTCTAACATCAGATCCCGAGCCCGTAGATCAGTTTCAAGAAACAGAAATAGTGAAT
TCTGGATCCTGCGAAAATGGCAAGAACGGCATGCCCGAAGTCAGTCTTGACGAACTACTG
AAAACTATGGAGTCTAAAGATCAAGGTGGTGGAATGCCAGGAAACTTACCTGGTGGCATT
CTGCTGGAGCAATCTTACATTATTAAACCAGCTGAATTGAATGCCATGCTGTTTTCAGCG
AATTCAGATCTCTGGCCAGCAGTTGCAGAAGTTCAAGGACTAAGTGGGTTTCAAATTGAT
CCCTGGAAATATGAGAGTAATGAAAATTCTGTGAAAAGGACATTAACTTACACAAAAGCT
GCAAGTAAATTAATCAAGTCTGTAAAGGCTACAGAAAAGCAGACATACTTGAAGGCAGCT
GGAAATTCGTTTGCTGTGCTTTCTAGTGTTAGTACTCCTGAAGTTCCCTGTGGTAATTGT
TTCAAGGTGGAGATATTGTACTGCATAATACCAGGTACCCCACTGCCATCTGAAGAACAA
ACCTCACAGCTCACTATAAGTTGGCGCCTGAACTTTGTTCAGAGTACAATGCTGAAAGGA
ATGATTGAGAACGGGACAAGGCAAGGCCTCAGAGAAGGATATGCACAGTTTACTGAAGTG
CTTTCCAAGAAAATCAAAGTATCTGAGCTAGATGGTGCTAACTCGAGCAAAGACAAGATT
CTAGCTTCACTGCAGACTCATGAACAATCGAACTGGAGTCTGGTTGCCCGTTTCCTTGGG
AGCTTTGCATTCATATTCTCATTTACTATTGCAGTGTATGGCATTGCACACCTTCGTTTA
GCCAAGCCCAGTAAAATGGTGCATGGAGGGCTTGAATATTTTGGTATCGATCTTCCAGAT
TCAGTTGGGGAGGTTATATTTTGTGCTATTTTGATTCTTCAGGGGAGGAATATCTTCAAA
GTAGGTCAACGTTTCTTGCATGCCTGGAAAAAACGTGGTAATTGTTTCTCTTTATCTAAA
GAAAAGTACACATGTATTTATTGATATACGCACTTTTTATTCTGTAAATAGTAATTCAGG
ACAAAAGAATATTATGCTTTCCACATCCCTCTCTACCTACTCTTTTATAGAATTGCTTTA
GTTATTGAGATGATTTAATAAACACAATGTCTTCATCTTAAGAACTATACTATCATTCCC
TTCATTGCTACTTCATATATCTCCACTCTTTTCCTTGGGAATAAACTGTAAGCACATGTA
AATCTTTGTCCTTCCATTATTAGGCAGCGATCATGGGGTCAAAGCTCATGGTGATGGCTG
GTTGCTGACTGTTGCACTTATTGAGGGAAGCGGCATAGTAGGTGCAGGCACACCAGGCTT
GGCCGATCCTTATGTAGTTTTTATGTGCAATGGGAAGAGGAAAACTAGCTCAGTTAAGTT
CCAGACGTCAGAACCAAAATGGAATGGTATGTTTGTCGAACTGGAAAGACCACCGTATGA
CCTTCTTAGAGCATTTGCTGATACGTGATCTTTTTAACTCTCTAGAGATATTTGAATTTG
ATGCGATGGATGACCCCCCGTCAAGGTTGGACGTGGTTGTGCACGATTCAGATGGACCAG
TCGATGATAATACTATTTGTCGCACAGAAATAAATTTTGTGAAAAACAATTTGTCAGATT
TGGATGACATGTGGCTTCCTCTCGATGGAAGGTTTGCCCAAGGATCTGAGCCCAAGTTAC
ATTTAAGAATATTTTTGAACAACTCCCGGGGGACTGAAGTTGTTATGAATTATCTGGAAA
AGATGGGGAAAGAAGTTGGCAAGAAGGTATGAGTTCGCTAGCATATGATTTATTGTCATT
TTCAACACAAAATATTTGCTGAAGTTACGTATGACTGAATGTTCAGATGCACTTGCGGTC
TGCTCAGACAAATTCATCATTCCGTAAGCTCTTTAGCCTTCCTCCAGAAGAATTTCTTAT
CGACGATTTCACCTGCCACCTAAAAAGGAAAATGCCACTTCAGGTAATTAGATGTGTTGA
GTTGAATTCACAGTTACTCCCACTGTTCCAAATTATTTGAAGTTCTACCTTTGTCCCAAG
TCAAACCTCTCTATATTTGACCAAGTCTATAGAAAATGTGCTAATATCTACAAATCAAAT
ACATGTAGTTCGAAAATATATTTTATGATGAATCTAATGAAACTAATTTGGATTTGTAGA
TGTTGACATATTTTTTCTAGACTTGGGTTAAAGTTGAATAAGGTTGAGTTAGGACAAAGC
TAGAAATTCAAATAATTTGGAACAGAGGGAGTACAAATTATGTGGTGTGCTGCTCAGCAC
TGCTGAATTTTGTCTTATGATAGCTGATACATCCCTTTTATGGCATTTAAGTTTTAACTT
CTACTAGTATACAGCTACAGCCTTGTGTGTATGAAATCAGTAGATCCTGTCTTCATCAGA
TTAGTACCATTGGCGCCTTATTTTGTCATAAAGAAAAGTGAAGAGGAGTCTGCATACCAT
GGTTCATGGAAAATCAGTACCACGGCTAAGTGATTGTTAATTGTTTATTGCACAGTAACA
GTTGCCATAATTTATAACAAATTTGCTGCTACCCTTTTGCATCTTTTGGGGGGTAAAATC
AATCGAGAAATTAAACTTTATATTTTTTGCAGGGGCGCCTCTTTCTTTCCCCAAGAATAA
CTGGGTTTTATTCCAATATATTTGGGCGGAAAACTAAGTTTTTCTTTCTTTGGGAAGACA
TTGACGATATCCAGGTTGTTCCACCGTCTCTTTCAACAGTTGGCAGTCCATCCTTGATGA
TCATCCTCCAGAAGGACAGAGGTCTAGAAGCCAGGCATGGTGCCAAAACACAGGATCCTC
AAGGAAGACTGAAGTTCCATTTCCAAACATTTGTTTCATTCAATGATGCTCACAGGTGTT
TTATTTTCCTTTTCCCTTTTGCCATTTGTTTTTATTTCTTTCGTGTCTACAGAGTTTGAG
CAAGACATTTCCAATGACATGTGTGAAGGTCTGAAAAAAATTGGCGCTCCAAAAACACTA
TTTTTTTGAAGCATTTTGGAGCACTGATTTTTTTATTTTTGTCCAGGCCTCCAGGAATGT
GACTTCATGAAAATTTGCACACAGGCAGAAAACTAATGTTTGTTGTGAAAAAGAATCAGA
ATTTTTGAATTTTATTTCTGTTTTGGGGATTTTACTGTTCATAGCTGGAGCATTTGAGCT
CGGGATTAGAAGGACACTTTCGTCCACACGACTACCACTCTAAAATTTGTATGACCATAT
GCACACACAATAGAAAGACACTCCCTCCATCTATAATGAAGATCATTCGACTTTTTTGCA
GTCTTTCATGGAAGACTTCAATGACATTTTCTGAACATGATAGGATATGAAAAATAAGAA
CCAAACAGAGAAGAATTTTGCAAGAAAAATCTAAAACATTATTTTCATGCAGTGGATCTT
TCCATTTTTCATACACTTCAGATGGCATGACAACTTGAAAGTCTAGACAGAGGGATTAAT
TGATATCAGGCTATCCCACGCACATTTTCACAATAATACAGCATGCAAACCAATATCTTG
CTATACTTCTGTTAAGATCATTTGATTTATTTTTTAATCCTATTCTTCCATTTCAGTTTT
CCATGAATTTCTCTTATCAAGTAGTTGATGATATACCAATCTGATGTCTAACAGAGTTAT
CATGGCACTTTGGAAAATGCGGTCATCTGGTCTAGAACAAAAGGGAGAGATGATCGAACC
TGAACCAAAACAGCTCCCCTGTGAAGAAGTTCCTCTGTTGGGCAACGAAGACGTAAAAAT
GATAGAAGTCTACTCGGCCGTTCTTTCTGTTGATGTGGGCCTTGCTCTCTGTCAATGAAC
GCATGTTTTGCACCTTGTATAATGCACTTGTAAAAGCATCTGTTTAAACCTCTTGAACTA
TGTACTAGCAGGTCAATGCCTTGATGGAGATGTTCTCCGGAGGTCCATTGGAACACAAGG
TGATGCAGAAGGCTGGTTGTGTTGACTACTCACCAACAGAATGGGAGCCAGTAAACCGAA
ACGTATACCAGCGGCAGATCAGCTTTAGGTTTGATAAAAGTTCGTCAAAATATGGAGGAG
AAGCAACAACCAAGCAACAAAAATATAACTTACAGAATCGAGACGGGTGGGTCCTTGAGG
AGGTCATGACCCTCCAAGGCGTCCTGCATGAAGACTATACGAGTGTGAGATAACTTGGAT
AATCAAGACTGGATCTGATGAAAATGCTTGCATGTTTAACGTCATATTGCAGGATCATGA
CATTCTTTCTCTCCCAACATTGCAGATCCAGCTCAAGTACCACATGATGAGCACGTCATT
GAAACCAAACACCTGCAGTATTCAGGTGATGTTAGGGATTGTCTGGTTGAAGGGCACTAG
GCACCAAAAGAAGGCTACAAAGAATGTCATGTCGAATTCCACCAACAGGCTGAAGGAAAT
ATTCTCAGAAGTCGAAAAGGAGCTTTCATCAAGAAAAGGTACCCATTCAGCACACCAGAT
TGATTCTTTCCGGTAGAAAATCGCTGAAACGAGCCTGGACTCAATTTTACAGAAATGCTG
CTGCTCTGATGAAAAATAGTCTCCAGTGCTAACTAGTACTTTTGCAATGTTGTTCCAGGT
GTGAGTTAACGCAGAGCAGCGACTAGATTGCTCGATTCGGTCGCCCAATTAGATTAAAAG
AAGACACCAAAGATCGGCAGTCATGATGATCATAACATAGTTCGGCGCGGCAGTATCACT
GCCTGCTTCACCCCTTTGCCAACCCAGTATTTTTGCACAGATGGCCAGCATATCAACTGA
CAAAGATATATTTCTCCTCCAAGCGCATTTGATCAATCTGATGTTACACCACAAGATTAT
ATGAATGGAATGTAGACTTCCCTGTAAGAATTGTTAGTAGTTCTTGTGATACACCAACAG
ACATGCCAGTCATTATCCCCATTCAGATATTGTAGAGTTTCTATGTACACCATATAGTAC
CAGGATGACAGAATTCAAGTTCGTACCACCATCGAGCTGAACAGCAAATGAGCAGTGCAT
TAAGGAGAACTACAGGAAACTGGTCCACTGTTGCCAATCGTTTAAATTGGCACTATTGCG
AGATGTCCATTGCTACATGAAACATATAAATATGTGGCACAAACAGAAAAAAATAACTCC
ATGGCAGAGAGGAAAAAAGAATGGTATTTATTTTTTTGAGGACAAGTAGGCATTTCAGCA
AAGAAGTTTTCTGCCATCCAAACTTCTGATTCTGGCTCAAAGGCCAGTTACAAACAAAGC
CAAAAGGGAATACAAAACGCCACTTGAAATACAAGCGTCAGCAATTCGATTCAACATAAG
AATAATCTACAAAGCTGCTGCCTCCGCTGCTGCAGGTTCTTCAATCTTCATCTTATAGAA
AAGGTCGAGAACATCTGCATGGTTTCGGACACTTCCAGGAGATACCGAGAGCAGCTGCTG
GGCAATTTCATGCCTCCCCTCTTTGAACAGACCTTGAAACAAGCGCATGTAAACTGTTCT
TGATGGGAACTCCTTTGAAGACATTGCGTTTAGCAGACCCAGGGCATCATCCACGGTCCC
AGATTTCAAAATGTGAGTGACAAATGGATTAATATAAGGCGGAAATCCATTACTTTTCAT
TAAACCTAGCACATCAAATGCTTCTTTAAGATGCCCTTGGCGGATCAACTTGTGGATCAA
ATACTTGTAGGTACTTTGCCAAGGAACCACATCCTTTTTCAGCACCAGGTCCTTCAGAAC
TTTGAACGCTTCCTTTGCTTCTTTCTTCCGGCACAGCCCATACACAAGGACCTCAAGAGC
ACTACCAACCTGATTGCCACTTCTTCTTTCCAGCATTTCGGGGAAGCATGAAACTGCCAT
ATCAACATCGTCACCAAGGGAATACTTCTGAACCAAAGCAGACCATACAAGTGGATCCAA
CTTATGCCCTGATTTTTCCACACGAGCCAAATGTTTGCGCGCTGTTTCCAGATTCCCAGC
ATCACACATTGCAAGAACAGCTTTGCCATGCACAGTGCTGTCTGGTGCAAAACCACCTTC
CTCCATGGCCTTCAACACCCTACCACTCTCACCAAGCCTTTCTACGCTTCTCAGTGACTT
GATAACAGCATCAAACATAGAAGCCTTCACCTCATTCCCCGCCTTCTGATAGATCCGCAC
AAGCCTCATCACCAGCTTCAGATCCATATCATCCCTCACAACAAGCTTCTTCAATAAGAA
GACAAAATCCTGAGCCGATGGCTTCTCCGTCCCCCCCATTGCAAACCGGAACAAGTCCAC
TGCATCCTCAAACATCTTCCTCTTGAGAAACCTGTCAATGAGAATAACGTACACCTCTTT
ATCCATCCCAACCTCCTTGCTACTCATCTTCCGCAGGACCTCCCGGAACTCCTCGATGCA
ATCCTCCCGGCCAATGATCTTTGACATTGCATTGTAAGCCTTGCCCCAGTTGATCCCTGC
CCCAGCAGACTGCTCCACCCAATTAAAGAACGCCATTGCCTGTCGCGGGAACTGTCCAAC
CTTCTCCACAACCAGTGCCACCATCTCATCAGTCACCTCAACGCCCAACTCATTCAGCTT
GTCCAACTTAGATAGCTCATCGGCATCTGAGCGGAGAATCTTGCACGCCTCCGCCACCGC
TGCGTTCCTGGCGTGCGCGGAGAAGGCCTTCTGGATCATGTCGGCGTCCTTGGACATGCC
ATTGGACCGGAAACTCTCCGTGGCGGCCTGGAGGGTGGTCTTCGAGATGCCGTAGCCCTT
GGAACGCATCGAGGAGACGAGTGACCAGAAATGGGCGGCGTCGCTGTTGGCGGCGGCGAG
TTGGAGCATGGAGTTGAAGCACTTGGAGTTGAGGACGGCGGCGTCAGGGTGGGATGCGGC
CCAGGAGAAGAAGCGGGAGGCGGCGGGGTAATTGGAGGCGAGGTCCGGGTGGACAAGGAG
GGCGGGGATGGTATTGGGGTGGGAGAGGTTGATGCCGGCTGACTGGATCGCGGTGGTGGG
ATCCGCCGGCAGGGATGGTTGGAAGAATATGGCAGCGATGGAGGAGCCGGACATGAGGCG
ATGGTGGGGGAGGAGGGAGGAGAGGCGGCATAGACGACCGCCGCCGGAGTTGAGGACGGC
GCGGAGCATGGCGGCGGCGGCGGCGGCGGCGCAGGAGGATGGGGGTTGGAACTGAAAATG
GGGGTTTAGCCTGTTAGGGTTGACCCGGTTGCTCTCTGGGCATTTGGAATGAAGAAAAAT
GGGGCTTTAGAACTAAAACGGGGGTTTAGCCCGTTTTCGCAAATACAGTATTTTCTTTTG
GACAACACTATGCAGCGGCGCCGCACCTGCGGCTTCCGTGCGGCGGCCAGCTAATCATCA
TTCTAATAAAAAAATAGAATTGCTTTACTAATCAGATTACTTTAAAAAGCATTAGGATGC
TTCGGTCAAATCCCTCTCTCTTCCTCGTGCATGCATACATGTATGGAATGATGTTATCAA
GATTCCCTTTGATGTTTGAAACTAAAAAAAGTTTTATCTACAAAACTATTAATTCAATCG
ATGATCCGCTTTCATCATTGACTTTCTCGCGATGAGTTCTTCGAAACTAGATTCATGTCA
ACATGTTCTGTCATATTTTTTTTCTGTTCATACTTGCCACATTTTTTGACCTACTTGTCA
TATTATTAACCACTTACTTGCCTGAGAAAAATAACTTAATTGTCACTTTTTAATGTTGAT
TCGTACAAATCCTTGTAGCAGTTTTCGTTATACATGATATAAAAGTATGTTATAGGTTGT
GTTTTCTAATTTAAATATACCAACTTGTCATATTTATATATAACTTTGCCAGAAAACTAT
TTTGTTTGCTTGTTAGTTTAACTATGCGAGTTGTCATATTTACAAAGATGATAAAAAAAA
CTTCTTGTGGTCACCGGTTTTAAATATGTTGAGTTGTCATATTTTTGCGCGCAATCATCT
AAAAAAAGTTGTTTGTGCTTGCCAGTTTGATTATGTCGAGATGTCATATTTATACACAAT
TTCAAAAAATATGACGATTAAGTTATTT