Map Locations of contig_135280 (10243 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_135280

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_4573 1 584 bp MLOC_4573.1 Available Available None
MLOC_4576 1 1473 bp MLOC_4576.1 Available Available None
MLOC_4575 1 330 bp MLOC_4575.1 Available Available None
MLOC_4577 1 323 bp MLOC_4577.1 Available Available None
MLOC_4574 2 622 bp MLOC_4574.1 Available Available None





CDS Structure of MLOC_4573






CDS Structure of MLOC_4576






CDS Structure of MLOC_4575






CDS Structure of MLOC_4577






CDS Structure of MLOC_4574






Contig Sequence (10243 bp)

>contig_135280 10243 assembly3_WGSMorex_rbca.fasta
TCTTTTTTCGGACGGAGGGAGTAGTAGTTCGTTTATCTTTTTATAAAAGCTTATTTCCAC
GTGGTGATGCCCAGCCCTGTCTTTACCATGACACCAAACGAGCTCTATGGAGTTACGATG
TCGCCAAAATGAGCTCATCCTGTCAACGTTCCGCGCGCGAGTCGCCCCACAAGGTGCCAG
GTCACTCTGCAAACCTTGTTAAAACATCAGACGCACGCACACGAGGTTCTCGGGCCAGGA
ACGGAGCTCCGACGCAAGGGCAAGGCTTCGCCATGGCTAGCTACGTTCCTCGCATCTGGC
TCCCACGGACGTTCGTGGAGCAGCAGGCGCACAAGTTCATATCTCGGGCTTCGAATTTCT
ACACGAGAATCACAGGGTACACACACATACTGTACTCCTATATTCTTCTATCGAATGCTC
CTTTTCTGTTCCTACATGTGGTAGAGTAATTTCGTAGAGAACTGGTAGTGGTATCTAGGA
TGGCTGTCCCGCTGCATGGACTAATCTCAGAGATTTTCCTCCGCCCAGATAGCCGCCCCG
TGATTGACCACTTCCCCGACAGTGCCTGAAATTCTGACTTCGAGCTGAGAGCAGATACTT
GACCACTTCCACTTCCCCATGATTAATTTGTCAGTCTTGCTATTTGAATGTGCATGTTGA
TCTCATGTAGTAGTCCAACCGCGATACGATACATTACATGTATCGGCCCGAGAAACATAT
ATTAATACTGAAACCGGTACCATTTCAAAATTACCTCATGAGAATCTAAAAACTAACTAC
TCCCTCAGTCCCGATGTATAAGTCATTTGTGTAGTTCTAGGTCATCGATTTAAGGAATTA
AATATATGTTATATGTTATAAAAAGTATATCACTAGATTTCTACACGGATGTAGTTTCTA
AATATATGTTTTTTTGTCACATATGATACATATTTACATAGTTAAATTGTCGACCTAAAA
CTACGCGAACGACTTATACACCGGAACGGAGGTAGTAGTATGATGCAAATATTGATTCCT
GAACTATTGAAAAAACCCTGAAACTGGAGATAGAAAATAGGAGAGAAAACTTAGACAGGA
AAAGGCAAAGAAGAAAAATCAAAAGGATAAATTAGCGTACTACACTCGGTCGAGGGGAAC
AAACGATTACAAGCAGTTCAAAGTCTGAGGAACAGTTACGAGCCAACTTTGGAAGCTCAA
TGTTGGGCCAAAAGTGTGAGTTTTCTAATGGAGGGTCCTTTGTGGAATTCTATCCAATGA
GACGACATTGAAGCATCGACGCATCAAAGAGCTATGCAGGTGTAATATTTGGATTAATTT
TACCGTTCTGACCTATAGCTGAAACATAATCAAGAATTAACCTTGTTTTGAATAAAATCT
CGAATCTAATCTTTTTTGGTCACATCAATATTCGTGACGTCGAGCTTACACGGGAGACGC
TAGGAACCATGACGTCCAGTTTGCACTAGACGACAAGGAACATCCTTGGAATTCAGCTTA
CACGAGACACGCGAGGGACCATGGCGTCCGCTTTACACAAGACGCTAGAGAACATCTCTG
ACGCCTAGCTTACACAGGAGACGTTAGGAACCATGGTGTCCCATTTACACGAGATGCAGG
GATGTTCCCTCGCGTCCAGCTTACATGGGAGACGTGAGGGACCATATGCCAAGGTTCATG
ACGTTTGGTGTGTAACCTGGGGGCTAGGAATGTTGGCATCACAAAAGAAGTCAGATTTAA
GATTAAAAAAACATATCATTTCATGAATTTGTTTCAACAAAAGGTCAGAACAATAAAGTT
GTCCCAATATTTGCCTCGCAATGGAGCAGAACTTCATACATGCACTAGTGTCATGTGAAC
ATGCTAGCGATTCTGGACTGGATCAAAATCTTCATTCAATTTGAAGTTGCCAAGGCTGCA
TCTTGTTACTTGGGCCATGGGAATTTATTGTGACTTAATGGTATCAAAGGAAGATACATG
ACACACTACTATTTTTGCGAGCTATTTGGTGTTCTAGGAATCATTGGACCCATAACGAGG
AGGCCTTCGATCCAACAGTGACAATGAAATGACATTGCTCCGAAACAGTGTTGGGGGCCG
CCCGATTTAGGTTGTGTGAAGATTAATACTGATGGAGACATAGGAGTTGATGAGCATAAG
GAGGAGGTGAAGGGGTAGCTCATTCACACATTTTCTATCTCCGTACTTGGTTTAAGCCTT
GTAGCAGGGTAACATATCTTCTTATGCAGAAGCGGTAGCTCTTCGGGATGGAGTTATGTT
TGCCAAGGTAGTATAAATACGTACTCTCTTGAAGTGGCCAGCCTCTGGAATACTTGCCAA
AGTTCTTGGTCAATTGTGTCTACTATATTCTTAAAAACTGGGGAGTTTACTTTTGGTTTT
TCTTCATATGTTATTCAAAATGTTCATAGGACCCCAAATAAGTCAGGTCATCTTTTGTGC
TAAGCATGGATGCTTGCACTAACCAATAGGATGTTGTATGCAATGATCCTCGTGCAAGTT
GCTCAAATTTTATCCTCCCATTTAAATAGCGAAGGACTAACTTGTAGACTTTGTTCTTCA
TGGTCATTATTATCAACTTTTTACATTTCTTTGTCCAGTCCCTGCTCTTATCCTTCTACT
TGATGACGATATTCATTATGTTTCTCTTCACGGTTTCTCGGGACAACGCAACATAGAGCT
GAATAAGAGAACACTAGATCAAGTACATACATGCCACAATCGGGATGGTTTGCCTTTGCA
CCCTAGTGATCATCATGGCAAAGCTAAACCTAATCGGAAGCTGTTTCCTCTTGAATATGA
AGGAGAACATGTTGTCCTTGCAGGTCAGAAAAGTGTCCAAGGAAGGACACCCTCTTACCG
ATGTGCTATCCTAGCGCGACTTATGTGTGGATGCATTTGTGTGGGAATCGAGACAATAAG
CCGTGTGTCATCATTACGATCTATCAACTAGATCGCTCGGTGGTATAACATGACAGTTTA
TCTTCAATCTAAGTACATGCGAAGGTAGCCTGTTGAGAGTCAACGAGTTGAGGACCTAAA
GAGCGCAATACTCGTCCTTCGCACCATCAAAGTTGTGGTAGATTACCTCTTCACCCGAGA
GTGCTTTATCATGCATATATTTATCATTTCAGCTGCCATGCTTCTCTAGCACATGTATAT
GATTGTCATGCTTCTCTAGCACACGTATATGATGTCATTTCATATGATTTTTTCATATTC
AACAAGCAAAAATACAGTAAGATAACTTCGGCCAACCAAGAAAACAAGTTAACATATATC
TCTCAAATGTGCAATTTCCTCCCATCAACGATTCTATATACTTGAAAGAAAGTGTAAATG
CCCTATAATATGAAACTTTCAGCAATATAATTTTTTTTTGCCACAGTGTGTTTTATGGGT
ATACACATGAAATCTTGATATCCTCTTCATGTTGAGCGGTGTGTTTGGTGCATAAATTTG
AATGCCTGTTGTCGCTTGCATATTTGTGTGCTTGCTTAATTTTCACCCCAATGTCAAGAG
AAGAATCTTGCACAATGCATATTTTAGTTTATTTTTCTTCCTGGTCTATGTTTTTTGTTG
ATATGTGTGTGTGCTTTATACTAACAAATTTTATTTAAACATCAGACCCATGTTCTGGAT
GGTAGTAGTATGTATAAAAAAACCTTGGACATTTTGTTGATTCTTATAATTTTCAATACT
ACCTAACTTGTATGTGATGCATAATGATTGACATGTAAACTTGGATTGCTTTCTGAATTT
GTAACTTCAAGAGAAACATGGGTGGTAATATAAATCTACTATCGAGGTTGCGTTATTTAG
ACTTGTTTGTGCAACTTTGCAGGTTCTGAGATAAACCTGAACACCTGAACTACACACGGT
GTCAAAGTTATGGAAGAACGCTTAGAAGATAAGCCAATTGTCATATGCAACTGGTGGTTT
GTACTCGAGGAGCTTAGTTCTCAAGGAAACAAGTAAGTACATTGTTTGTTGCTTTTCACT
TTTCTTACTACTTTGATTGTTGTTGTGCTCTTAGTTATCTGAAGTATATCTCATGTTTGC
ATTGGTATAAATTAGATCATAGCTAATGATATTCCAAAAAGAAGAAGAACGATATATAAG
CAATCAAAAAAACTGGCTACCAATTGGTTGGTTGTGAACTTCCTTTGTTAGCCTCACAAA
ACTTGTCAATGTTTTGGCAATTTTTTTATCTTTCCAAATGTTGAACAACCAATTTTGGCT
CCTTACCAATTATGCTTGAAAGCATGATGCTGCTGAAGGCGGTGTTGGGGGGCATCGACT
GGGGTGAGGGAAACGTGAGCTGCTTTGGGTAGTGTGAGGTGAGTTGGGGCAGAATGTGGC
GTCACCGAGGCGAGGGAAGGAAAGGCATGGTCTGAAGGTGGCTTTGGGCGGCGACAGGGT
AGGGGTGGTTGGTTTTGATGTTAGGACTCAGTGACATTTTATCCGCGAGAAGCCTAAGTG
ACAATGATCTTATCTGCGAGGACCATGTTTTTTATTTTTTTGTATCTCCAACTTGAGTTG
TGAGGGGGGAATGAAAAGAAAACCAACGCTAACAAAATGGATGAGTGTTAGCATCCCATG
CCTAGGTCCCAACGTATGTCCCAGCTTCGGGCATTTCTGATGCACATTTGACAAACCACT
ATAAGCGGAGGGTCCATCACATCTCATAAGACTATCCTGTAGGGAGTGTGACACTCTCTC
TTGTAAGGTGGTACGAGCCCCATGGGTCATTCGAACGTTTCCGGTGTCCATCAGACACAC
CCTTGTAAGCGAAGAGCTCATCACATCCCAAAAGAGTATTCTAAAGAAAGTGTGGCACTC
TCACTTATAAGGTTGTGACGGCCTACCACGTAACGAGGTGCAACTAAAGTACTAACAACG
CCCAATGTCACTAACATAAAAATCGAGGAGTACAGATACATAGGAGAGACCGGCCTTCCA
CTTTTTTTATTTTAGTTCTTATTTTATACTCCCTCCGTCCAAAAAAGGATGTATCTAGAA
CTAAAATACATCTAGATACATTTATTCTTATGACAAGTATATTCGGACGGACGGAGTAGT
ATCTAGTAAAGGATCTGTTTTTTTTTCTTTTTCCACAGAGTGGGAGGACAGACGCAATGG
ATAATAACGACTTCCTGATATTAGGCCAATTTCAACGGGCTACGACATTTGGTTCGTCAA
TATCCGTTTGGATCGAAACAAACAGAATAGCGGCCCAATGATGACCCAAACAGATGGGCG
TCTATTTTTCGTTCGCCCGCGACCCATTTTCAGCCCAAATTTTGGTAGGGTCCGCGACGA
TGCCCGTCCTTGTCCCCCTGGCCCACTCGCCGGTGGCATGTAGGAAATTCTCTCTCCCCC
TTTCACAACCGACACCATCTGCCCTCGCTGCCGCCACCCACTTCCGGTCGCTTGGACGCT
GCCGCCACCCAGGCCTGGGCATAAAAACCGATGAACCAAAGACCGAACCGATGCCGAAAC
CGAAAAAACCGAATTTTCGGTTTTTCATGCTGTTATAGGAAAATTCGGTTTTGAACTTTA
CTAACCGAATTGTATTCAGCCGGTTCGGTTTTATATCGGACACCGAAACATAAACCGAAC
TTGCTATGGAAATTGCCGCATGTGTGCATGCGAGACGTGCTGGGCGCCTCGGCTGGTCAC
ATAACACAGGTAATTAGGCCCACTTTTTTGCATGACAGATTGTGCCAGGCTGGCCTCGAC
GTATCGCCTCTGCTGAAGCCCGCTCGCTCATTCATTCCGCATGCATTTGGATTTGTCCCA
CCTCGCCTAGCTACACGAGATGAGGCAGTGAGTTCGTCTACTTAAGAAGGCTTGCTGCCA
GAGGAAAAATACATGCTCGAAACGTGGTGAGAACAATTGATGTTTCTCTTCGGTATAAAC
TGAAACCGAACCGAATTTTTCGGTTAACCGAGTTTTTGGTTTTCAATCTTTTTGTGCTCT
TTTCGGTCAGCAATATTAGAAAACGATTTTCAAAAAAGACCGAACAGTAGAAACCGAACT
TTCGGTTTCTACCGAACGCCCAGGCCTACCGCCACCCACTTCTGGTCGCTTGGACGATGC
CCATTCCTCCTCCCGCATGTACCCATTCCCCCCACCTCAATGCCGCATCCGAAGGCACAT
TCTTGCCGACATTTGTGGCCTCTTCTCTCCACTTTTGGTTCAAGGGCAGCTACAGTTGCC
AGCACCGACCTCCACTGCACTTCCACCAGCCTCGTGCTCCAGCGCCGCTCACCGCACTCG
CCTCTACTTTCACATGCCTCCTGCATGTACGGGGAGGGCGTGGAGCTCTTCACTGGTTGC
TACCACATAACGCCCACAAGGTGTTCGTTGCTTTGCCCGCAAGGTACAATGGATAGTGGG
GATGAATTCTTTTTCAACAACTTCATTTGTGATTCGGACGATTCTTCGTCCGTCGGTGAG
GATTTTGTTGTTGCTACTTTGTTCATCAATGAGCACATTGCTAGGCAGCGGCCGAGGTTC
AGAGGATCCATTTTGGGCCATGCTCCAGCGTTGAATCGGAAAAGAGAAAGCGACCATTGC
CTACTCTTCACCGTCTACTTTGAGTGCATGTTCACACTCTTCAACCCCAAGCTTTTTTGG
CACTGCTCCAGGATGGCAAGACATGGGTTCAACCATATTCGTGAGGGAGTGATGGCGTAT
GATGCAAAGAGGATGCCCTTGGAAAGGTTGATGTCTCCTTTTATCACAAATGCAATGTGG
CTATTCGGATGCTTGCATACGTAATTCACGGGTTATCATGTTTATGAGTATGTCTGCATG
AGTGAGTCCTCATGAATTGCATCATTGTAGAAGTTCCACAAGGTTGTGGTAGCAGTATTT
GGTCTGGAGTACTTAAGAGATTCAAATGCCACAGATACAACCCATTTATTGACGATCAAT
GCGAGAGAGGCTTTCCCGGGAAGCTTGGTACCATAGATTGTATGTACTGTAAGTGGAAGA
ACCGTCCATTTGCTTGACATGGGCAATATAAGGGGCACATGAAAGCTTGCACTGTCATAC
TTGAAGCAATCACTTCAAAAGATATCTGAATTTGACAATCTTATTTCGTATGGTTTGTTC
TGACAATGACATAAACGTGCATCAACGGTCTCCCTGCAATCCTCGACCTCCTTGGGGCAG
GAAAACCACCCATGTCAAACGAAGCCTTACTGACGTAGAAGATGTTTACCAGAGCTAATG
ATTCACCGAGGTGTATCCTGGTTCCCGGTCTTATCTCTCGAGCTAATGATTCACCGAGCA
CATCCTGATCACACCTTATTCTGAGCACATCCTGATCACACACTTGACCCACTTCATCGC
GACCACACCTCACCGTCGGCCCAGGCCCAAGCAAGAAAACCTTTGATAATTGTTGACTGA
TACGCGGCGGAGGATAGCAGCAGGTAGCGGCATGTCCATATCGTCATCCATCTCTCGACC
GTAATCCCACGTCCCCCAACGCCACGCATTCAAACCCTTCAATTTCCGGCCCCATCCTCC
CGCGTGTGGACCAGGATCCGTGCCGCGCGAACCGTTGGCCACGATGGAGCGTCGCGTTAT
CGGGAGCCTATCCGGTGTCCCGCCGGGGGGATGAGGGCGCCCATCGCCAGTGGCCGGGAT
CCACCGGCCTCGCCGAGCCGCACGCCGCCGCGCGCAACCCGTCCTTGGCTAGCTTGGTCC
TCCGCGCGCAGCCGCTCCCGGCACTATTTCTTGCGCGCGTATATATAAGGAGGGCGCCAG
GCACCGCCCATCTGCAGACAATGTCGACCGCCGCGGCTAACTGGTGCTACGCAACCGTCG
CGCCCCGTGCCCGCTCCTCCACCATCGCCGCCAGCCTCGGCACCCCCGCGCCCTCCTCCT
CCGCCTCCTTCCGCCCCAAGCTCATCAGGACCACCCCCGTCCAGGCCGCGCCCGTCGCAC
CTGCATTGGTACGTACTGCACCTGCACCTGCACCTGCACTACACTACGCACGCCTTGGCA
ACTGCATGCACCATGCATAGCTAGCATATCCGTCCTCTATCCGGCCCTTCTTAAGCTTTG
GCTATAAGTTTGGCATCATGGCATGTGCCTTTGCTGTTTTGGGAACGGCATGGGCCATGG
GTCCCTTTGATCCACGCCACATGCCTAGATCTTCTTCCCAGAATATGGGAGGATGCCAGC
CACAATGCCTTGCGATGGCTGAACCAAATGCACCTCATTTTCGCGCTCAAAGAACCAAAA
CGCATTACTGCACAGCTGAGTTGACCAGCTTGATCTGCACATGGGGCTTGCATGTTGCCC
ATGATCTCCTATACTTTGCAAAAGCAATCATTGAATAGTATATGGATCCAACTTCCAACA
GACAAAGGCATTGTTTTCTTTAGTCCTCCCTGCATCCACCATCAACATGAGTGTCAACAA
ACCGCATAGAATACGCGGGAAGAACGGTTTTCCAAAGAGGTGCCCAGCGATAATGTTAAT
TAAACACAATAATGTGCTCTGGATTGAAAATAACTTCACAAAGTCTCAAGTGTACAGGAG
AAAGTTTATACTAGTGCATAAATATGTTGCTGCTTTTCCTTAAAGCGATAAGGTGGAGTC
TATCGGGCATTATTGCTAAGACTGAACGACGCCAATTAAGCTAGGTCTACTCTATGTTCC
TACTCTCCTGGTTCTTCGAGAATGATGTCCATCCTTTTGGCTTGATGTTGGGTAGTTTGA
CTTTGATTCGAAATACTAACGACTAGGTCATCCAATGCGTCAGCTTCCTATTTTCCTCTT
TTTGGAGTTTTCAAACACCACCTATGCAAGTTATTACACTCGAAGGTTATAACAAATCCT
CATTTAGATTACTAATGTCTCAAGAAAACAAAGAGTAATGTGCAGAAACACCAAACTTTT
ACGTAGGAGATTGTACATAAAAACTTGTAAACCATAGGTAGAGGACGCCTGGTCTTTTAA
TTTGTTGGCATCAACGCCACAACGCTACACGTAGTGATGTGATGCAGAGCTTGAAGCTGA
TTGCAACCCTCAACCATGTGTGGTAGCAGCTCCTCCAGCCGAGATGCCATCAACAAAGAA
AGAATCCTACACATATGTCGTCCCAATGTATTAATCTTACATTCTAAAGAACATGCTGAA
GTATTATTTGGCATAATACATCATGCATGTCAAAAAAAGAGCAGAAACGCCGTCATAGCA
AGCATTTACAGTCTGTCTTCAAAAAAAAAAGAGCAAGCCGTTGCCGTTCGGTCGTCAATT
CAGGAGATTCGGGAGCAAATGCCTGCCCCTGGTCGTCGATTGAGGAGTAGGGAGGGAGGG
AGGGAGCGGTACGTTGCATAGGTTCCTTCCAATAATTCAGGAGGCGTTGGTCTCGGCAGT
TGGTACGGGATAGAGGCGTCATTTCCGCTCCGCCTTCCTCGTCTATGAAAAGGAAGATGC
TACGTCCCCGTGAAGAGGTGGCCCTTCCTCCGGCCCCAGGATCTGGATTTAGACGTTCGT
TGGGAGTAGAGGGGCCAATTGTCCTTGTATCTGGGAGCTGGTGATTACCCCAGCCCCCAC
CTTCACCCCATGCACCTGGGCAAACGCTTCTGGGGATCTGACTAGTACTACTACTAGTAC
TAGGCAGCACACAGTTGAATGGCTGGCTGGCTGGCTGGCAGAAACGAGTAGAGTAGTACT
GGTATCCTGATATGCTTTGACTTGTGAACTTTGTCGGTTCCTAGACCTAGTGGCAATTGC
ATCATGCAGCAGTTCCTTTGTTCGTAAGCTTTCTCTCGACCCATCTTATATATATTTGAT
TCCATAAATAATAACATTAGAAAGTAGTAGTAGTAGTAGTACAAAAGGAAAGGATAAACA
TAAGCAGGTCCGGCCACCTTCAATTCACGGGTTTAATGATCTGACCAAAACATGCTAGTA
CTAGAAAAAGAGAAAAGAGGACCATAGTGACCGGCCATTTGGCCACAGAGCCAGCCCCTC
CTTTGCTGCTAACTTCTTTCGTTGCCTTCTTCTTTCCACTCACCGCGTTCCACGTGCCAT
GTTTGCCAGTAATCCGTCCGTCCATCCATCCGGGGAGAGAAGAGAGAAGAGAGAAGAGAG
GAGAGAAAACAAAAGAGTAGAGTCGCGATAGTTGAAGATGAGCGGCTGCCTGTGCCTCCC
CTGCTGCTATAAGAAGTCCCCCGCCCCCGCCCCCGCTGGGGAG