Contig Data
morexGenes
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Map Locations of contig_135270 (5571 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_135270

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_4563 2 3042 bp MLOC_4563.1 Available Available LOC_Os01g08150.1, FRAME:-2, EVALUE:0.0, 13101.m00843 protein expressed protein
MLOC_4562 2 553 bp AK361166 Not available Available None





CDS Structure of MLOC_4563






CDS Structure of MLOC_4562






Contig Sequence (5571 bp)

>contig_135270 5571 assembly3_WGSMorex_rbca.fasta
TTGAGGAACGGCTCCTCAAGCCGTCGACCGTGATGCCCATCACCAGCACTGTGCCGCTGC
ATGAGGAGCTACCGCCCGCACGGCTGACCCGCGCGCCGGCCTGCGGCCCCCCCTCCACCG
GCGCCGGGGCCCCCTCCCCCCAGGCGGCGCTGGCCCTCCACTCCGGCAGCGGCCGCTGCC
CCTCCAAGCGCGAGGCCCTGGCGCAGCACCAGGAGATGCGCCGCCTGCGCGAGGACGTCG
CCAGGCTGCAGGTTCGTCCATTAGACATTTTCCGACTCCGATGACAGCTCTTGTCAGTGC
TCACGGTGCTTGCGGTGACATGTCTGGGCTGCAGGTGCAGTGCAGCGCGCTGCAGGAGCA
GGTGGAGAGGCTGGGCTCGGAGAGGAGGCGGCGCGGCGGCGGCGGCGGGTTCAAGTGGAG
CACGCTCTGGTTCGGTGGCGGCGACGGCGGCATGGGCGGCGACGTCGCGAGGATCGAGGA
CTCGGAGAGCGGCATGGAGCGGCGGACGCCGGCGAGCGGGAAGAAGGGCAGGGCCAGCGT
GGCCACGGCGACGCCCACGCCGACGCGGCGGACCCCCAAGTGGCGCAAGTCCATGTCGTG
AGAGGAATCTGAAGCCGGCGGTTGCCCTCGTGTTTACAAAGCTTTTCTCCTCACTTAGTC
TCTGTTTCTCCTTTGGTCACATATAATTATCACAGTTTCTAATTTGGTTTCTCCTTACGT
TTGTGTTGCTGAATATCAAGAACGAAATGCTCAATGAAGGTTAGGGGTTTAATTCTGCAA
GGGTGATTACTGACTAGAAGTGTTTCCAAGATTACTGACAGAGTTCTTCAAACTACTGTA
AACCTCACTCACACATGCATAATTTAAGAATTTGGTTCTATCTTTTTTTCACAGATCAAC
AAATAGTTGTACACACACACACACACACACACACCAATGTGATCACATAAGGGTGATCAC
TAAAGTAACCACAAATGTTTTACAGGCAGAACCTCACACAGTAATCTGCAAGCTATGCAT
CACTAACTTACTCAGCTACAGGAACAAATAATAGCACTTCAGATAAATGTAACAAACACC
ACATGGAAAAGAATAAACACAGGGCTGAGATTGCCTCATTTGTGTACCGCTTTCTTGATC
GCCTGCTTGCATTTGCTGAGGAACTTACTGCTGCTCGTCGACACCGAATCCTCATAGCCG
TATCTGCGATCGTCGTCGCCAACCACCTTCGGTTTCCTGCCTGCACAGTCTGAGCCTCTC
CTCATTCCCAGGATCTTGGAAGGAGAGGATGGCAGGGACCGGAAACCCCTACCGCTATCG
GACCTTGGGAACCAGATCTTCCTTTCCACTTTCTCCTCCTTGATGTCAAAGCTACCCCTG
CATCTTGGTGTGCCATGGTAAGTAGCAGCACTCTCACCACCGACGTCAATGATCTCGTCG
ACACATTCAGTGATCTCGTCAACACGTTCAGTTATCTCATTCCTGCAGCTCTGGTCATCA
TCACCTCTGCTTTGAATTTCCTGTTCATCATCTGAACCGTCCTCCTCAGCAGCATTGTGG
TCTTCCGAAGAACGGCATGCCGCTTTATTTCCTCCTTGTTGGTCCTCCATGAGCATATGG
AGCCACTTATCAACATTGCCCTTGCCTCTGTAGTTCATGTTTTCATTGTCTTCTGCTCTG
GCAACACGTCGAGGATGAAGCATTTCATCATCCTTCTGCACTGGTAGCGACTGCTCTGTG
GGATACCTCGGCATTCCGTAAACACCGGTCGCTCTATACGGGGGACTTGGTGGAACCGAG
GGGGTCCTTGGAAACGAGACTGTCTGGCTTGCATGGTGAGACCTTTCAGTCTCGGACTCG
AGCATGGCTGCCTTGCCCTTATCACCTCTTGATTTGATAGGTGTACCTCTTGCTGACATG
GTTTCCTTTCTTTCCCTTCCCCTGCTACGATGCCGCCGCTCTCTGATCGCCGATTGTTCT
AGCTTCTCCCTTACTGACGCTCTTCCTCTGTCAGTGTAACTTCTGTTTTCATCAGTGGAG
ATGGACCTTCTTGGGAAGCTTATCACTTTGGAAGGTTGCTCAGTGTTGACATAACTCATT
GTTGAAGTCCCTTCTCCAATTTCTTCCCCCTCCATGGAAATGTATGCATCTGAAGTCCTC
TGAGCCTCCTCCAGGAAAACCCTCAGCTCCTGTTTCAGAGGGCTGCTCCTCGATACTCTT
TCTGGCAAGTACCTGAAACTCTCACAGTGCCTTTCCTCTGGGATTTCATCATCGACCCGG
TACCTCTTCCTTGCCTGATCTATGAAAGGCTTCACTTGCCTCTCCAGATCATCCCTGTGC
TGGTACTTCTTGCGGAGCTCGGTTTCAGATGAGTCACACATTGCTCTCTGGGCCTCCAGT
CTCGCCATCAGAGTACTAGTTGCAGCTTGGTTCAGCCTGAGTTGTTCCTTGTACACAACA
CTCCTGCATTTTGCATCACAATTGAAAATTAGCACCAGTTAATCAAGATTCTTCAAAGAA
ACTATCGGCTCTTCGTTTTATAGGATCATCCTTACTGGTGCATGGCGTCTCTGATCATCT
TCTCGAGCACTGTCTTGTAGTTGGCCTGGGCGTCTGCCAAGCGACGGCACTTCTCCACTC
GCCGACGCCTCTTGATCAGCTGAGCCTCCAGGTCCTGGATGGCCACCCTTTCATCCTCAT
TTTTCTGCTGCATCTCGGTCAACTCGTTCTCCAGTTCAGTGAGCTCAGCTTGCTTCTTCT
TCGCCTCTTCTCTTTGCCTCAGCGAGTCCCTAGCCATGGCTATGGATAAGTAAGGATTGC
TGATGTAGCCGTCAACATCTGGATTGTTGTTCTCCTTCATCATCGAATTACCACCATGGC
CGCCGTGGGCTGCCAAGTTCTCGTCCTTTTCGCCGGAGAACTTCTTTGCGGCTACAAGAA
AAGCAGTCCCTCAATCATCCATAGCTGATATGCAGATGTGGCGAAAACGAGGAAATTAAT
GCAAGAAATTCTCTGACAACCGCATACCGATCAGGGGGTAATTGGACCTCACTGGTCTGT
TTGCGTCAATGGATCTGAGCACCGAGTTGTCCGAGCCCCTGGCGGATACGATGGCGGCAG
GCGCGAGGCCCACCTTCTTCTTCATCTCGGCGAAATGGTGCGGGAACGCGTGCGCCTCCA
CCGCCTGCAGCGAGCTCAGCTCCTCGCTGGCCCCGTCGGCGAAGAGGAACGCGAATGCTC
TGTTCCTGAAGTCGGCGTTCTTGGATGCGAAGATGGAGAGGAAGTGGTTGACGGAGATGC
CGAGCTGCAGATCCCACCACGGGACGAGGAACTCCAGCTTGTTGTGCTTCCTCCTGGACG
CCTGCAGCTGCATGATCCGCAGGTTGCTCGGCACCGTCCTCCCTCCCCCTGCAGGTCGAT
GAAGACCCAGCGTCAGAATTCATCATTTCAGAAGACAGAGCAGACACCTCCGTCCCGGAG
GAACAGGTAAGTGAGTTGTTCTTACTGGCGCAGGGAAACCAGTGGTGGACGTCCCAGGCG
AGGGGCGAGGCCGCGTCGGCGTGGAGGTAGAGCACGTTCCCGTAGGCGTCGACCCGGAAG
AGCGCCGGGTCGAAGCCGGCGTTGCCGAGGTGGTCGAGCTGCTTCCAGAGCAGGTTGGCG
AAGCCGCGCGGGTTGGCGGTGGGCGTCGCCTCCGCGTCCACCACCGGGAACATCTCGTTG
AGCTCCTTGGCCCGCAGCGCCTGCACGGATCAGATCGGATCACGAAGCGGCACGGAGGCG
GGGGAAGGAGCGAAGGGCGGGCGGATCCGCGGGAGAAAAGGCAGGTAGAAGGTACCTCGT
GGGGCTGGAGGACGTAGGGGAGGAAGGCGCCGGGCGGGCCGTGGGCGTAGGGGAGGCCGA
GTGCGCCCGCGCCGGAGCCGGCGCGGCAGAGCCTGGCGTAGGCCTTGGGGTAGCCCAGCG
CGTCGTCCACCGCCCTCTCCTCCTCCGTGAACGCCGCCATCGATCCGCGAACGCCGCCGG
CGAACCTTGTACCGCTGTTGTCTACGGAGCAGTGTTGACTGCTGTGTCGGGAATCGGGAT
CAGGTGTCTGCTGATGATGACTGAGGCGAGTGCGGAGGCTGCGGCTCGGTGAAATACAGC
TGATTTTTTTTGGTTTGTTCCGGAGGAGCGCTTGCCTGCGAGTCTCTCGGCGCAACGGTC
GACACGGATGGGGACGTGGAGGCCGGAGGGAGGGAGAGAGCCGTTGGGGTTGGGGCTGGT
TCAAACGCGGCACGTGAGGGGCACGTGGGGGCCGGGCGAGTGAGGCTGGCTTGTGGGGCC
GGGGCGACGGCGGGACGCCGTTTCTTCGTCCGATCTGGGGGCGAGCTGAGTACAACCGGC
GTACTGTAGTAAGTATACGTATTGTAGCGTACGAGATTGTATACATGTAGTATTATTTCT
TCCTTATTTATGGCGGTGATTAATTACGGATGGATGTGGGGAAGATAATGCTTTGATGAG
TTGGCATTGATGGATTGATCCGTGCGTGTCAGAAGGACACAGCATGCAGAGCGAGGGGCC
GCGGAGTTTTATTTAGTAGGAGGACGGCAGCCGGTCCACACAGCATGCTCAGCTGGATTT
GTTTCTGTCGGCCGGTTTGAAATCCGTGGTGACTGGTGAGCACGAGCCCAACACGACGCC
ACCAACTCGGCACGCTAGGAGCTCAAACTTTAAGCCTCAAAGTCCAGCTCTATTCCCCTA
TTATTTAGGGAGGATTAGTTGTCATGTTTGGTTAGGTTAATCCGATGACATTTTATTCAT
CCATATAAACAAGGTGATGGTGGAATAAAAAGCTTGGAGAGGATTGTCTAAATAAAACCA
GCTCGCACACGCGCATGCCTATCGCGCCGTGCCCAAAATGGCGTCAAGGCTGAAGTTGGT
TGGACTGTGGCGGCAACACGCTCTCCGTGCAAATGTTTTCTGATCCTTATTCAAACCCTT
TCTAAAATTGTGAATAATTTTTAAAAACACAAAGACTTTTCTAAAACGTGAATTTTTCTT
GAAATTCCAAATATTCTTGAAGAAGCAAACATTTTTTGCAATCTGTGATTTTCTTTACAA
AGGAAAAGATAACAAAAAATGATTCAAGAACCATCTAATTACCAGAACTGGTAAAAACAA
GACAAAAACGCTTCAAAAGGCTCAAAAATCAGGGACCAATGTAACCTGGAGTATATGGGT
CGGCCAACCTGTCCATTCCACTATGTTAAAACCATGACTATGAGTCTATGACCATCCAAT
ATGAAAGTTGCTTTATGTCCAAGCCCCCTCCCCCATTGGTCCGGCGAAGCTATAATGCCA
CGCCTAACACGGACTCTACCTCATAGATGGTTCAACCCAATATGTGTTCCTGCTAAGAGC
ATCTCCAGCTGCGCCCCCAACAAGCCCCTTCTAGGCAATTTTTTGTCGCCGACGGAGAAA
TAACGGCCCAGTCGCGTCCCCATGAGCCCCATTTTCGCCCGTTAAATCCAAAATTGGCCC
CGGTGGTCCCAGGCCGAACCCAACGCTCCCTGCGGGGGGGGGGGGGGGGGG