morexGenes - Barley RNA-seq Database

Contig contig_135243

Source Contig contig_135243

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_135243 (3043 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location

Predicted Genes from contig_135243

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_4547	1	998 bp	AK366586	Available	Available	None
MLOC_4546	1	260 bp	MLOC_4546.1	Available	Available	None

CDS Structure of MLOC_4547

CDS Structure of MLOC_4546

Contig Sequence (3043 bp)

>contig_135243 3043 assembly3_WGSMorex_rbca.fasta
ACTAGTTTTAGCCTCTCTTTAGTCAGGGTGCTTGGAACTTTAGCCTTTAAAGACACTAGT
TTTAGTCCCTGGGTCCAAGCACCCTCTTAGCATACGAGTTTCAGTCTTGAAGAGCCACAT
AATGCATACGAGCATCATCAAAGCAAACTTAACATGCACGAATGCCATCATAAGAAGGTT
TAACATACACATTCAATTCAAATAGATATCATTGATTACATCATTTCAATTCAATACAAT
ACACATCATGCAGACGACTAGGAATCAACAAGGCTGACCTAGCACAAACCAACTGTGAAC
ACATCCTGCGCTTTTATTTCTGCTTGATCAAGCCTTGTACCGGTCAGTCGACCTTCGCCG
CGCCACCTGTGCGCAATTATGACCACAGGCTGCAAAGTAACAGAGCTTCGCAGCAATTCA
ATTGTAAGCCAGTCAGTTGAATATATATCAGCACCAACGCGCTCCAGACTAGCACCACGG
CCTAGCATCACGGCTAAGGATGAGGATGAAGATCAGAATCACAAGACAAACACCGATACA
CATTACAGCATGCCGCATGCATGCCGTTATACGGACACTTTACAGCGAAACGGCATGAAA
CTCCTTCTAGGCTTGACCCAGGGACCAGTTAAAGCCTTGGTTTCACACGTCTTCCATTTG
CATCGCCACCATCCAGGACTTCGTTTGAATATAAGCAGGGGGGCACAGCGTGGTCTCCTA
CCTTCGCAACATACTCCAGAAGCTCGGTCAGGAGTGAAGGGCAGCTTTGCTGCAAATAAT
CGAATCCTTCGGTTTGCATGACAGCTGCACAAGAAAGGACAGGTTAAAAAATGTTGTCAG
ATTAGGATTTCAGGTCACATCCTATGCCTACCAAAACAAGGGTATTAGTAAGCATAGAAA
AAGAAAAATACTTGTGGCTTTCATATATTGAAGATGCTTGTGGCTTGGTAGTGAATACAT
ACTGCAAGGTCAAGGGTACAACTAATAGGCCAGACACTACATCAAAAGGTTCACACAACA
AACCAACTAATAGGCCAGACACTACATCAAAAGGTTCACGCAGCAAACCATTGACCAATA
AGCAGCAAAGAAAGCAGTGGCAGAGTCCATAGCCTGACAGCCTCTTGAAAAATAAGGTAT
ATTAGAACCACCTGTTTTGCATTAATGAAACTCATGTTCACATGCAAAACCATTAAGCCA
TAGCCTTGTGGTATACCACCAAATTAACCAAAGAGCAAAGCTATCTATAGGCCGCTACTC
ATGTCAAAAGCCTAAACAAATTCTTGTTGCAGCTTATGATCCTAAGTACACTGATGGATG
TTTCCCATTCATTTATATTCTCCCACATTTCAGTTCTCAGGGATGCTTCACATCGGGAAC
GTAAAATTTTCAGTGTTCATATATCATAGGATCTCATAAGAATAGGACCTCAATGCATCA
TAGGCAACTGCGGTATTTGGTACTCCCTCCGTCCCAAAATAAGTGTCTTAACTTCGTACT
AACTTTAGTATAGAAGTTGAGACACTTATTTTGGGACGGAGGGAGTAGTATTGTAAGAAT
GTCTCAGTATAAAAGAAGAAAAGGTCAGTTCACCATATATTATAACAAATTCTATGGTTT
ATGCCCCAACTAGCCCTGCCAAAAAATTGGCATGACCAAAGTGAGGGCATGACCAATAAT
TTAGTGAGTTAGTATTGCTTGGATTGCTACCATTATACTACCTCTGTTAGTTTGCAGTTC
AGTTTGCAGTTCAATTTGAACTGCAAGAACATCTTATATTATGGGGGGACGGAGGGAGCA
CCTACCAATATTTTGGCAAACACTCACTTAGTTTGCGACCAACTGAATTGCCAAACATTT
GGCAATTTGGATTGATTAGTTTTTTGTTTGATTCTATCGGTTGCAATGTTGAGTTCATCA
TTATAGTAGTATGTTTTTCGATAGACTTATTCATTGATCTCCAGACAAAAGAAACAAACA
AGCATGCAAGAGTACAGATGTACAACACATACGTCACCTTGCAAAGAATATTGATCTCCA
GTTAAGTCTGTTTTTCAGCTAAGCCGTGATATGGCCATCACTCATCAACGTAGCATCTGA
ACTACGTACAAGATATGCCTTAGAAGAAGGAAACTCACAGAGTCATGGCCGCCTTCCCCA
AATAGTTCTGTGTAAGAACAAACAGTTTGCAGTACTCCTATTGGGCTGTGTAAACACGAT
TTGGTTACACGGTCAACACAATTAATCGATCCAAATAACCGTTCGTAGTTTACACATATA
GGTTAGCAGTTTACCTCTGCCGATTAATCCGGCATACTGAACACTTAAAATACTATCATT
ACAGAACAAGACGACACCCACATACTAGAAGCGGGTAAGAGTCATGCCAATTTTCGGCGA
GCGAATCCCACGCCCACAGGACGCCAATCCGTTGGCAAAATTTTGGTGCCAATCCAAACG
ACATCAAAATCTAGTGGGCGAGCCAAATATTTGGTAGGGTCAGCATTGGATGGGAACCAA
ACACAACCCCGATAGCCACAAGTAAATACATACAGGAAATCGCCAAATTCTATAGCAATA
TTCTCAGGCTTAAATTCTTACCTTTCAAATTCTCCGGCGAGGCCACAAATTTCAAGCAAA
CAGTTTTTAGCTGGTGGCAATGGTGCTGTTCAGCCAGCGCCAAAGTATTTGCAACTGTGT
TTATCGCAACGTCTTCACATAGCTTGAGTTCAGAAAGCAGCTTTAGTCTCTCCAATGCAT
ACCGGTCAGCAGCTGCAAGCAAATGCTGAGCCATCAAAGTGGAAACCCAAGTCGTATTTA
GACCAGTAAGCTCTTCTATATTGGGCAATTCATCCCAGTACATAAAATGGAGCAAGGCCT
GCAAAGTAGAACATGATGCACACCATGTCAGCTCAAGTGAAAAAATAGAAGGTTTCGAAA
GCCAATGGAAATGAATGAACCATATTTCTGCAGAGCTAAGAGAATGCAAATGTTTATAGT
AAGAAGATAGAAAGAAGACAACAACAACCATGCCTTTCAGTCC