Map Locations of contig_135236 (5743 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_135236

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_4537 5 4002 bp MLOC_4537.1 Available Available LOC_Os03g46710.1, FRAME:-2, EVALUE:0.0, 13103.m05027 protein expressed protein





CDS Structure of MLOC_4537






Contig Sequence (5743 bp)

>contig_135236 5743 assembly3_WGSMorex_rbca.fasta
TACATCCGTATGTAGTTCATAGTGGAATNNNNNNNNNNNNNTATATTTAGGAACGGAGGG
GGTATGTTGTTACACGGATGCAGTAATTACTTTGGAGTCATCAAAACAATTGTTGCCCCA
GCAACTTCAGTTGCTACATTTTTACATACACACATGACCAAAGATGCTGTGCACCTGGCT
CACAAGTTATAAGCCTTTAGCCTTCTGCTACTAATTCAGACATGCATTACAGTATTACAT
CCTTATTAGACAAACTATCATCTGGATTGACTTACCAAATAAAAATGTGAGGTAAGGAAG
GTGATGGGGTACTTAGCTGAGTGAGGCCAACTTCTTCTCCAGGCGCTTTGCTGAGCGAAG
GGCCTCCAGAGCCTCTGCCTGCTTCCCTTCCCGCTTCAAGGTCAGGGCCTTCAGTTTCTC
AGCCTTTATCTGTTCCTCGAGCTGACTTCTCTCAGTCTGAGCCTTGCTTGTAGCCGCCAC
GGTTGGCCTTGCCTCTGCTTTCACCGGTGGTTGCAGGCTCGGAGATTGCGTGGACAGGTC
AGCTGCGCTCCAGCCGATGGATTTCAGGGCAGACATCATTTGAGGATCAATAAGATCTTC
CACAAATGCGTCACTTGCTTCAGTTGATTTTCCTCCAGAATTCGAACCCTGGCTGTCCGA
CTCTTCCAGTTGGCTCTCTAGTGACTTGGCTAATTCGAATTCCGCATCTGCTTCTGCAGT
CTTTCCTTCTCTCCTCAACTTGAGGGCATTGCGCTTGTGAGTCAGGGACTCGCGTTGGAT
CCTGAGACGGTCTCGGCTAGACATTGCCTTTTGAGGCTCAACTGACTTGTTCTCCTGTGC
CGGAGGGGCATAGGTCAACGGGCTGGTGTGAGTGCTGATGCTGGCGGATTGCTGGATCGA
ATTGCTCTGCTGCACAACTGATGTCGTTAACTCATGCGCGCCATCCTCAATGTCTTGTTG
AGGGGCTTCAAGACGCTTCTCTAGGAGTTTTGCTAGTTTCAATTCTTCTCTAGCTTCTGC
CAACTTCCCTTCTCTCTTAAAAGCAACTGCTTTTCTCTTATGGAGTAAGATATCATCTCT
GAGTGTGTCGCCTCCATGTGGCTTCGGAGGTTCTTTATGATCAACATCTGAAGGTGAATG
CAATGCTTCTGCAGTTTGCAACTGATCAGCAGCAGGTGACCTGGAGAAGGCCGAGTATGC
TCCATCACTAGTTACCTTTGAATTGTGAGTAGGTTGGGAAATGACTGTTTCAGTTTGTGG
TTTGCTTCCAGAACTAGCTACAGTATCTATTGACGCACTAAGTTCAGATGCATTCACTGG
CAACAAAACATCCTCCTTCAATGCATGTTTTATTGAAGATGCAGTAGCATGAATATTAGG
GACATGCTGAATATCATATTTATTTTCCATAGTCTCATGTTCACCAGGACCTGAACCTTT
TTGAGAAGCAGTTGAGTTAGCCAATTCTTCTATCTCTGCAAGTTGCTCCTCCAAGACCTT
CGCCTTCTCTAGTTCCTCTTCAGCTTCTGTATTCTTCCCTTCACGCCTAAATGCAAGAGC
CTTCCTTTTGATAGCAAGCAGTTCCTTCTGAATCTGACCCTTATTCTTCTTTGGCTTCTG
GGCAACTATAGGTAAACGATTCAATGGTTTATCTGTTGTTTTCACAGAATCATTATCATC
ATCTTCCCATCCCATATTTTTCAACACAGACAGCAATGCTGGATCCTGCATGTCATTGTC
TGTCACCTCAGGTTCATAGCTTTCATCAGCAAAATCCAGACTAGGGGGTTCAGCATTAAG
TGGGGACTTCGAACTAAAGCCCATGTTTTCCCTGGCTACAGATCTATTGGAAGAGCTTTC
AAGTTCTTCGAGTTGCTTCTCAAGAATACTGCCTTTCTTCAACTCTTCCTCAGCCTCATC
AACCTTTCCTTCCCTTCTCAACGCTAGTGCCTTCTTTTTCAGAGCTAGCAGCTCCCTCTG
AATTGCAAGCTTACTTTTCGGTGCTGATACACGACGCGTGTTAATCTCTGTGACTCTGAT
ATCTTCAGTGTGTGTAATTTTCTGTCCTGGAAAAAGGACCTCCGACTCCGGCTGTTCAGT
TTCCAAATCCTTCTCAAGTAGCTTTGCCTTTTTAAGCAATGACATGGCCTCTGCAACATT
ACCAGCCTTCTTGTGAGAAACAGCCTCTCTTTTCAGAGCAAGCACTTGTTCCTTTACTGC
CTCTCGATTCAAAGAAGAAACAGGTGCATGGCTGTCCATTTGGTTGTCACCATCTTCACT
CCAACCAAATGATTTTAGGGCAGCAGCCATAGCTGGGTCGTTGATGTCCTCGTCTGTAAC
ATCGAAATTGCCATCAAAGTTAAGATCATCAGAGACAGCCAGAATTTGTTCGAAATTGAT
AGCAGGTAGTCTTGAATTGTCGTATAATATGTCATCCTGGTTATCATCATCCATGTTATG
AATAATTGCAGCCAAATCATCATCAGACTCTTCCGCCTCGCCCAGAATCTCCTGTTCTTC
CAATTGTCTTTCCAAAATTTTAGCCTTCTTCAGCTCTTCCTTTGCTTCAGCAAGTTTACC
TTCACGCTTCAGCACTAGGGCCTGTCTCTTCAGAGCATTAACCTGGGATTTGTCAATACC
ACCAGCTTTCTTGCCCTCTGATGTCTTTGGTGCTACTTCTCTAAGAATCTGTGACAGCTC
TCCTTCAACACTCATAGCAGTTGGCCTTGTTTCATCATGAAGATCTGCATCTGACCAGCC
TAGATCTTTGAGTTCAGAAGCAAGATCATTCTTTTCTTTTCTAACACTTTTCCCACTTGG
AGCCTTTTTTGTTACAGCGTCATCATAATCCTCAATCTTCTGGGTACCAACAACGGCACT
AACAATGGGAGCTTTTGTCGCCATTCTCCTGCTCTTCCTCAATTCTAATTCAAGTGCTGC
GGCTTGCCTCTCAAGCTCTTTGCCATGCTTGAATGCCCGCAGTGCTTCCTCAGGTTTTCC
TTCTGACTTTAGTATTTTGTACTTTCCCTTCTCTTCTACTGCTTGTTGACGCAGTTCTTC
CGGAGTAAAAATGGATGCAGTGTTGTTGAGTTCATAGTTTTGTGCTTCAGTGGAAAGGCT
TCCGTCACCATTCCCATCCACACTGGCTTTTCTGGAACCCGAACTGGATGCACTGGCAGT
GCTTACGGTTCTCCCAGGAGCCTCAGAACCCAGAGATTCCCTACGAGAAAGTTGACCGTG
CACACTATCACCTCCAAGAAGTTCACTAAGTATTTCATCCTCTGGTTTAGAAGCTGGTTT
TGTGCTAGCTGTGAAAACAACATACATAGAATTATTTGCAAGTTAAGTATTCTTAACAAA
ACAGATGTGAAAAGAAATATACAATTGCAAGTTGACAAAAGCATACTACTATAACTGGAG
TAAAACTTAACCATGTTTCAGCTTGGTGGGAAATAATAAACAAAGCAATGCAAAATAAAC
ATGAGAACCATGAAACAACCAAACTAGTAATAACTTCACATATGTGACATCTACAGAGAA
TATAACCTTTCATAACAAAGACCCAAATTATATGGTTTTATCAGCATTTGAAATTCTGAG
CTATAGCTACCAGACAAACAGGAACATATTAAATCACGTGAATGGACAAACACCGCCTAA
GTGTTACTTGTTTAGCAGTAAGAAGACGAAAGCACCATTGCTAGGTTATTCAGTTAATTA
TCCCCTGTGTATTGAACCACATGGATATACATCTCATACAGAACTCCAAACAGGAGGACG
AATGTTACAGAGCTCAGCCCTGCAGCTCGACTGTAAACAAGTGCCCTAATGTGTGCTGGT
TGGGAAGGTTGCATAATACAAAAGCAATTGTGTCCAATGCTGACAAACAGATTAATTTTT
AATCAAGCAGGACTCGCCACTTTTAGATGTATCAAGTATCAATCAAATCATAATTCCTTT
GATAAGAAACAAATTTGATAGAAAGCGCATGGAAATAAATTGACCTTTCCCGGCTCTATT
TTTGTGTCCGTATCTCAACTCATAGCGTGCTGCTTCCTCGAGTTTTTTGCAAGGATCACA
GATTCGAACAGGTGAGTCACCCTGTCCACGTAATACCATCCTCTGCTGGGTGCAACTGCT
GCAGAAGAGGCCTCCACATCTTTGGCAATGATGCTACATATTAAATAAACGAAAGTTAAC
ATAGCTCCTGATCCAACTATCTCCATAAGATTACAAGAAATGTGAAATTTCTGTCAAGTG
ACAGATATGCAAAGACTAATGGTGAATCCAATCATTCAAATTACTGAAACAAAACAAGAG
ATATTTTTAGACCCCATAAATCCAAACTTCATGAGAGACCGGCAACAGCACATGATTTTT
CTGTTTAAAGCTTTGGATTTGTGAATGTACATTCAGATAGCATAAAACAAACATGCAGTG
CTACTTTTTTTATTAGGCATGAAACAGAGCAATTATTAACCATCACTGCTAGGACTAAAA
GAGATTATCAGTCTGTCATACATTGAGGTCATTCCAGTGAGAATAAGGGCAACTTAGTTC
GCCCCGCCCCCAACTAAGTTCACCCCCCTCGACATAATCGCTATGTATATGAAACTACAA
AGTGTGAAGCTTGCAGCATGTATTGGTTCTGTACTTTTTTTGGGCTGAGATCCGACCGAG
TACTAATAGGCTGGGATGTGTGTCAACAACTCATCTAACCGCCTTGCAAGCACATGGTAA
AACCCCACAGTTAAAACTGCTAATTCTTGGTTCTGCATAATCATGACAGCAAAGGCAGAG
GCGAGACGTGACAAGAATTTATCCAAGTAATGAGTAGATTTTCTTCGAGTGAAACAGTGA
TCCAAAAGTGAAGGGGATTCCCATGAAATGCAACTGAAATTGGGGTGGACATGACACGCA
ATATGGCAAGGGAAACTGTAGCACCATCAGTAAATTATATGAACGGGACTATTTGTGCCC
GATTCGATCATGGCAGAGGAGTATGATATGCTTCATACCATCATCACGAGGCCAGAAATC
ACGAGATTGATTACCTTCCGTGTAAACAAGGAGAACTGAGCGGCACAGCCCTGGCAGTTT
GACGCGTCCAGCACCCAGGTCGCCCCTCGCATCGAGGGCTTCGGCGGCAACCCGATCTTC
TCCAACATGGCTACAGGCAGGAAGAAACCCTGCCTATCTGCGAACAAGGAACTCTGCAGG
CTAAATTTAAGCACTACGCCTTACATGAAGTCAATCAGAGTATACTTGTATACTAGTAAT
TCGTGGATCTGGATCAAACGAAGGCGAGAAGCGAATACGGGGTGGAAGAGGAGGAGCGGA
AGGCGGCAAACCTTGCCCCTTGGTCCAAGTAGGAGGAAGACGAACGCCGGATCTTCTTCG
CCGCCGCAGGACGGGGAGGAGATTTGAGGCGTGGCGGCGGACCTTGGTGGGAGAAAAAGC
ACGCCGCCGAGCCGGATCCGTCGCCGGAGGGGAGAGGATTTGCAGGCGTAGCGCTTGGTG
TCTGTGTTGGGGGTGGGTGGGGTCGCCGTAGCCCGTAGGGCAGAGGACCAGGGTTGGATG
CTTCACCAGCGAAGCTGCCTCGCACGGACGGCAGTGCTACGCAGTTGTGCAATCGAGAAG
GCACATCCAACTCTGGATCTTGAGTGTCTAAACATTGATCAACGGTCTGGATACGTCGTT
AACGAAAACGGTTTTCGTTAGCGCTAAACTAATCGCACACCCC