morexGenes - Barley RNA-seq Database

Contig contig_135213
Source Contig contig_135213
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_135213 (6965 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location
Predicted Genes from contig_135213

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_4517	4	1745 bp	MLOC_4517.1	Available	Available	LOC_Os10g32810.1, FRAME:+3, EVALUE:0.0, 13110.m02875 protein beta-amylase, putative, expressed
CDS Structure of MLOC_4517

Contig Sequence (6965 bp)

>contig_135213 6965 assembly3_WGSMorex_rbca.fasta
GTCGGTGCTCGTCCACGTCTGCACGGACCGGTGCAGCCTGGCAGATGCCTGTGCGCGAGC
CACCGCCTCTCGTCGCCGCTGCTCGCCCACGCCTATATGCGCGCCAGCGCAGCTTGCCCT
CTTGACGTGTTGGCAGCAGCAGTTGCAGGAGGAGATGGACGTGCATGCAAGTTGTGAAGA
TAGATAATGCAAGCAATCTGACGACAAGGATGTGCTAGCCACTAGCAATCCATCCAAACC
AGGCCACAAACACATCGGGTAAGGCTGTAAGATATAAGGGCACTTTGGTCCTTTCAGCTG
CCAGAAAATGGAAAAAAAAGGAAGAATGGCATGTTAATCAAAGTGCCCACGAGCTGGATG
GCATTTTTCCGAAGCCAATGTTGACAGTGGCAGTTTTGCGAAGCCCGGTATTGAAAATGG
CGAATAACCGATTTTCTCGAGAGGAGAGAGGGGGAAGACGGTGTGGGAGGAATATGAACA
TTTGGTGGCTTACTCCTAAATGTTGGATATTGATCTGATGGTCAAAAAATGGAAGTGACT
GGCATGAGAAGGTTTTTTAGGTATAGATGTTCCTTTAATTCATTTATCATAATTTGTCCT
TAGCAACGTACGGGCAATTTACTAGTCAATGATGATGTAAAAAAAAAACTTTTTTCGGCA
TCGGCCCTGCTGTGAAATCAGTTCTCTAAAATCTGACGGACGTGAGATAATATTTTGGAG
AAAAAACTGAAGCATAAAGGAGCAAAGTCAATGACCGCACGCAAAGAAGCACTTTGAGAT
TTGTCAACCAGATCACCAAATCAACACTTTTGCGCCTTGCTTGCGTGCGAGGCGATGGCC
GAGAGCGCCGCCGCGGCCGGGCAATCATCCTCGGTGAGGAAGTCTGGGGTGCCGGTGTTC
GTGATGATGCCGCTGGACACGGTGAAGACGTGCTGCGGGAGCGGTCTGAACCACCGGAGG
ACCATGGCGCGGGATCTGGCGGCTCTCAAGAGCTCGGGCGTGGAGGGAGTCATGGTGGAC
GTGTGGTGGGGCGTCGTGGAGGGCGAGGAGTCGGGGCTGTACAATTTCGAAGGGTACATG
AAGCTCGTCGAGATGGCGCGCGATGCCAAGCTCAAGGTGCAGGCCGTCATGTCCTTCCAC
CAGTGCGGCGGCAACGTCGGTGACACCGTCAAGTGAGGCCATTTCGTCCGATCCCCTTCT
TTCTTTTTGTGCGGCGTTTGTGACATTTGGGTGCTCGTCTTCGTCGGTGATGGCAGCATC
CCGCTGCCGCGGTGGGTGGTGGAGGAGATGGACAAAGACCAGGACCTCGCCTACACTGAC
CAATGCGGACGCCGCAGCTACGAGTACGTGTCGCTCGGCTGCGACGACGTGCCCGTCCTC
GACGGACGCACGCCCATCCGGTGCTACACCGACTTCATGCGCGCCTTCCGCGACCACTTG
GCCGGCTTCCTCGGGGACACCATCGTCGTAAGTCCCACGCAGTTGATTCAGATTTCTCTT
GTTTTCGTAGTTGCCGTCTTGCCGGCGCCAATATTCCCTGTGCCGGCGTGCAGGAAGTCC
AAGTCGGCATGGGCCCGGCGGGCGAGCTACGGTACCCGTCGTACCCGGAGAGCGAGGGGA
CCTGGAAATTCCCCGGCATCGGCGCCTTCCAGTGCTACGACAAGGTATTCCAGCTCCGGT
TGAATTCAAATGGTGAGCCTGCCTGTATCTCGAATTTGTTTTGACATTTTGTTGCAGTAT
TTGCTGAACAGCCTGAGGATGGCAGCGGTGGCGGCGGGAAATCCGGACTGGGGCCTGGGT
GGGCCGACGGACGCCGGCGGCTACAACAGCCGGCCGGACGACACGGACTTCTTCCGGCAG
GACGGTGGCGGCTGGGATTCCGAGTACGGCCAGTTCTTCATGTCGTGGTACTCGCGGATG
CTCATCGAGCACGGCGACCGCGTTCTGTCCGGCGCGGCGTCCGTGTTCGGCCACGAGCCC
GGGGTCCGTCTGTCGGTCAAGGTCGCCGGCATCCACTGGCACCACGGCACGGAGTCGCAC
GCGCCCGAGCTCACGGCCGGGTACTACAACACGCGGCGCCGCGACGGGTACCTCCCGATC
GCGAGCATGCTGGGCCGCCACGGCGCCGTGCTCAACTTCACCTGCGTGGAGATGCGCGAC
GAGGAGCAGCCACGGGACGCGCGGTGCATGCCCGAGGGCCTGGTGCGGCGTGTGGCCGCG
GCCGCCCGCGGGGCCGGCGTCGGCCTGGCCGGTGAGAACGCGCTGCCCCGGTATGACGAT
GCGGCGTATGACCAGGTGCTGGTCACGGCTCGGGAGGAGCGGATGGTGGCGTTCACGTAC
CTCCGCATGGGCTCCGACCTGTTCCAGCCCGACAACTGGCGCCGGTTCGCGGCGTTCGTG
ACGCGGATGAGCGAAGCCGGCTAGTCCTCCTCGGCGCTGCCTTCCGGTAGGCTCACGCTC
GGCGTCCACTGCGACGATGTTGCACGTCTTTTTTTTTTAAAGTTCAATTTAAACCTTGAT
TTTGTATTGAATTAAAATCTCGATCAATTACATCATAAACTATGCATTCGTGGTGTAAAT
CAAACCTGACATCGTGTCAATAGCTCGGATTCGTGTAAACGGTACATTTTAATTTTTTTT
GTTCAAAAAATAATTCGTTTGGTGGGCTGGTCCGTTCTCTAGGCATCAGCGCAGCCAAGG
CGTACACCACCAGCAACTCGCAGTTCGACCACGCTCGAGGGAGTTTTCGCACACCGCTCT
TCCATTGACGCAAGCACCAGCTACACACCCGTCGCTAATCACTGATGAACTCCTTGGCAG
TTTGTAGGAGTGTTGTGTCCAAGTGGACAATTCATACAGTATATAGCAGTTAATTAACCA
AAGAGTACGAATTATCACTGATGGGCAGCATATGGACAAAAATACATCGGTTCACGCAGT
CAATTAACCAAAGAGTATAAATTATTCACGCAGTGCGGCACACAACGTACATTACATCGG
TCAGGCACACAGTCAGATGGAGCGAGCCGGAGCGACCACGCGCGGGAGCTAGCTCACGCA
TGTAGCCAGCCAGTGCTAGCTCCGCTAGATCACGCACATCACAGCTAGGAGTATATGGCA
TAACACACGCACGACATGAGCTATGGCGGGGACGTCGTCCAAGCACTGAAGTACAGCTCC
ATATTAACAAACATCAACGAGCAGGCGTCCTTGCTGGACACACGTGTTGAACAATTTTTA
ATATACATTGAACAAATTTTGAATACACATTAAACATTTGTGTGTTATACAACTGAACAA
TTTTTAAAAACATTTCCTAAATATAGAATAAACATTTTGGCAACACACAATGTATTTTGT
ATAATATAGGAGAAAATAAACAGTAACAAGAAAAGAAAAAATAAATCCAAAAAATAAAAA
GTATAAATATAAATAGAAACCAAAAATAAAAAGAAAAAAGAACCCAAAAAAAAAACAGAT
AACAAACGAAAAACCTGAAGCAAAACAATGCACATCACGCGTTGTCGTGAACTTGACCGG
TCCAATCCCAATCATCTTTTGCCACTTCAACAATTCTCGTTTGGGAAATAACTTGATGGT
TTGGTTTAGACAGGGATTACATAGTTTAGGGTGTAATCCATCGAAATTTCGATTTGAGGG
TTTATTCTGATCTGACTTTTACGAGTTTAGGGTTTAAAATAGACTTTTTTTTTAAATAAT
GAGGGGTTGTTCCACTTATAATAACCCTTGGGATCTCGGAACGTATGTAGGACAGCACGA
CCACTAAAAAGTGAGGAGACCGCTTCACTCTCTTCTCTTCTCATTTCTACATATAAGTAT
TTGATGACATGACACATACTATAGCTTGATAGAATTCGCGTGTAGAGCATGCCTAGTTTT
ATGGCATGATCGACTTCGCGTCTCCATTATCACTCGGGTTCTTGTGCCAGTCAAAATGCA
GGTGGGTAGGCCCGCGGATCGTGGCTCCGTTGGTATCGCATTAGTTGCTACTTTCTTTGT
TTCTAAATATAAGTCTTTTNNNNNNNNTCACTAGGGGTCTACATACGAAGCAAAATGAAT
GAATTTATAGTCTGAAGTATGTCTATATACATCTGTTTACAGTCCAACAGTGAAAACTCT
AAAAAGCCTTATATTTAGGAACGAAGGGAGTACATTACACGATTGTTTTCTGTACGTGTG
AAATATGGGCATGCACGGAAATGGTGCAAGAGAATGAACAGGCCCGGCCCGAGGGGGGAG
GGGGGGGGGCGAACAACACGGCCGCACGGGGGGCCCGATGCTAGAGGGGCCCCTCTCGGG
TTCACAGCAAGCCTATGAGTCCCTCCCCTCCCTTCCGCTACTACCCTGGACTGACAAGAG
GATACTTTTGGGTATCTGTCGGCCTTGATGTAAGTTGGAAGTGACTAGCGTTAGGCGTTT
ATTCTGGTTTGGAAGAGTGATTGCGACGAGAATTCTGAAAAGATCTAGTGACAGCGGCAT
GGACCCGGATGAAACCGGTAAGCTCCTGGAGATGATGTCACTATAGGATGAGAAGACGGG
CGACTTCGCGTGGGAAGAGGAGATTGATACAGAAGAAAATGTACCCAAGTGACTCGTTCT
CGGACGATTGCTGAGAGGGAAGAGTTTCAACCCGAGTGCCCTAATAGCATAGATGAAGGC
GGCATTGTAACAGCTCGGAACCGACGCTCTAGAAGATTCCCCTTTTATTTCATTGTCGTC
CTGTGATTTATTCAGTTGTCGCATTCATCATCGCATCATNCGCATCATCTGCATAGCATC
GGCATTGTGTCAACATGAGTTTTCAAAATTGCATCTGTTATTAGTAGCCGGTCTTCTCCG
CTTTCGTCGTTCATCATTTCAAGACCAATCACACACGCACGTGCCCGCGACATCATTAGA
ATATTGTTATCAAAAGCGTATCTAAAATATTCTTGGATTGGGTTGAAACTTAGCGTGTGG
TCTTATTTTAATGTAGATAAGCCGCCTGCCACATTCCATCGCAATCGGAGTTTGTTTGAT
GTCTGAACCGTTAAACCTGCAGCGGCACTATAGCCGGTTAAATTCCCGGACGCTTTGGTG
TTTAAAAATCTTGTCACGGGCTGTCAACTTCGCTCTCATCCCCAAATAGTCCATCTACAC
AGTCCTCTAGACCCACCTAATCCCTCCCTTCATTCGTGGTCATCGGATCGCGATCGGACG
GACGATGTCCAACCCACCATAGACCAAACCATATATATAAACCCACCCCATGAGAAGAGC
CTCTCACTCCACTAGGGTTTCTCCCTAACCAAAATTGTAGTCAACCTTAGAAAAACGCAC
CTGTTAGCTCCACCTCCTCTCTCCCCTAAAATCCTATCCCAGACCCAAATCTGGACCATT
GGATCCCCATACAATGGCCCTAAATCGCCCACAATCCCACCAACGAGACATTTCCGCGGT
CAAACCAGACACATTCGACGACCACAGTAGCCCCGCATCCGCCATGGCGACCAAACCCTC
TACCCATGCACGCAGCCGCACCACGGCCGCGCACCGTGCCCAAGCTCGTCGACGGTCGGT
CTCGCACCGCCCTTCTCCGGAGCACCGCCGCCGGTCGCCGCCATGGCAAGTCGGACCTCG
CCCCGCCTCTTCCTCTCCTCCTCGTTCTTTTCTTCTCTACCCCCCATGCTCTATTCCCTC
CATGCCCGCAGGTGCCCCGCCGCCATGGAGCTCGTCGGCCGCCCCGCTGCCCGACGACTG
CCCAGATCCGATAAGTCGCCGCCTTGGTTCGTCCATCTCCGATGCCTCGCTGGCCCGCCC
CAAGCCACCGCCTGACCGGTGCCTCGCCTCCTCTCGATCGGGAACAAGGAGGAGGATGAC
ATGCCTGTCGCCCGCATGGACCGGCTCAATGGCGCCCAGGCCGTCCCAGTCGCCCCACTC
GCCAGCCCCCTTTGTGGTTCGGCCTAGCTCGACCCATCCCCGCCTGCCTCAGCCTCCTGC
TCGACCGGCCCATGAGGCCAGGTGAGCTGCCCCCCTTTTTGCCTATATGACGCCCAAGGC
GACATTTCGATATCTTGCGACGTGCTCTCATTCAGCCCAATAGTCAGTTTCGGCCCGTTG
TAAAAAAAATTCACGTTCTGCGAATTTGGCTAATTAACTCAGGAATTTCAGATTTTACAA
AAATATGCATATTTTAAATTGCTAACAACTTTTTTACCGTGCACCGGATTAAAATAATTT
TAATATGAAAATTGCTTAGAATTTTCTATAGTTTCACAATAAAAACTTGCACCCATGTTA
AAAATAATTAACTTGCATCCATGCCTAAAACGGTTTTCGTCATAACTAATTAACCGTAGC
TCCGATTGAAATGGTCCACATAGGTAACTTGGCTAGAAAAATGTATAGAATAACATGGTA
GCATTTATTTTCCTATTTAACAACTCTAAAATTCTGTTTAGGCAGAGCTATAGCAAATTC
CAAATTACATGTGGGAAATTTCCGGAATTGATATGTGTTGTTCTGGACTCATTTAAACTT
GTGTACAATATCGTGTAGTGTCATAATATCATGTTGCATCCATCATTAACATGCTTGTGG
CTGCCATTTGAATACATTTTGCATCCATGGCATATCATCTTGTGTTGCTCATATCTTTTG
AACCGTAGCACCGTTGTAAATGGTATATATATATAAATCGACTCGAATAACGTGTAGAAT
CACGTGAACCACTTTATTTTTATGTTTAACAAATATAAAATATGTTTACATTATATCCGG
AAGATTTTGAAATTACCGTGTGGGGTTGTTTCGAAAATACTATAAGATGTTTCCCACCTC
ATTAAAAATGCCTAGATAGCGTAGATTATGCTTCACCTCTTGCCATGTTTAAACAACATT
TAGTATTGTTGAGTACCTAAACGGGAGTGAACTAAATATATGAATGTGGAGTTTCGTCGA
TATGC