morexGenes - Barley RNA-seq Database

Contig contig_135210
Source Contig contig_135210
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_135210 (7539 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_135210

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_4516	2	836 bp	MLOC_4516.1	Available	Available	LOC_Os03g11250.1, FRAME:-1, EVALUE:4e-17, 13103.m01268 protein expressed protein
MLOC_4515	1	1394 bp	None	Available	Available	None
CDS Structure of MLOC_4516

CDS Structure of MLOC_4515

Contig Sequence (7539 bp)

>contig_135210 7539 assembly3_WGSMorex_rbca.fasta
GGCCAAGATTTAGACTACTCACAGTATGAACTCTTGGGACACCCCGTGCTAGTGCGACGG
AGGGCTGAAAGGGTAGCCCATTTTGTTGTCTCCTATCATGCCATTCGGCGTCCCGCAACG
CACAATGAACTTCAGAAGGATCTGATTAAAGAGTGGTGGGCATGGCATGGACGACAAAGA
GCATGATTTCTGCATTCGACATTGTATTGTTCATGAACTATTGGTTGTGTTTATTGCATT
ATTTGTTGGACTGAACGATAAATTATTTGGTTGAGTTGTAATGACTATTTATTGTTGATT
TATTTTATTTGTTTGATCATTTTTGCTCATATTTTTTAAAATATATATGTGGTTTGTGCG
TGCTGCGCGCGCTGTATCTTTAGGCGATGCTGAAGCGGCGCGTGCGCGCTGCATTATAGC
GCAGTCATTGGAGCCAGCGCTGGTGGCCGCGCTAAACCAGCCAAAACACGCGCGGCGAAC
AGGTTTTTTGCGCGCGCGCTTTCGAGATGCTCTTAGCCACGTATGAAAATTCACGAGGCA
TGTGTATGGATCCGTGCAGGCAAGGAAGGAATATGCTGTTCAACTTGCCAAAATTAGACG
CTAGACAGGCAGCAAGAAACACTGCTGAAGTTCCCAATCCTCCCCGCTCCTCTAAAACTC
TGCCAGCACTCAGCAGTTTACAGCTGACCTCTCAACATACTGAGCAGTGAGCAGAATACA
GAACCATGGTTAAACACTCTGGTACTTATCTCAAAAGCGTCGTGTACCGCTCACTCGGAT
GCAATACAGAATAATACTGACACGTAAATGAATAAGCAAAGTACGACATGGCATGCAGCT
CTCGCTCTTCCTAAGATTCACCGCCGCCGTCTCCGGGCACCGAGAGTGCGAGGGCAAGGC
AGAGAGGCACGACGGCGTAGGCCCCGAGCTTGAGCAGCTCCTCGGTGTCCTTGGAGATGG
CGCCGATGCGGGACCAGTCGCCGCTGTACCTGCAAGCCAACGAGACTTCGTCTATTTTAT
CTATGATCGGTGCGCGCCGGCCGATGCGCTGTGAGCTCACGTACCCGGCGTCGACGAAGC
CGAGGGCGAAGAGAACCGCGCCGGCGCGCAGGAGCACGGCCTTGCCGTTGAGCGCGCCGG
CGAGGCCGTTGTTGGCGTTGCCCCCGCCTCGCTCTGCTTCCGGTGGAGACTTCTTGGTGC
TGCTTCGCGGGCGGAGGAGGTGCAGGCGCCTCCCGCGGTGCGTGGGCGTGGCCGTGCGCG
GGGAGGCGGCGGTCCTGGCGCCGTGGCCGACGCAGGAGCGCAGCATTGCTCTCCTTGTTG
CGCGCTCTGTTCGCTCTGGTTTCCTTCTCGTCCACACGTGTGTTTGCGGCGAGAGGCGGA
GGCGCGGAGCTGATCTGACTGTGAACGCTTTGGCTGAGCACGACTCAGCTCCTCCTTTAT
CAACCTACTGGCTTGTTGCAGCTGAAGTGATGGACATGCTTCGGCTCGTATGGCCCACAT
ATGCTTGTTTTATGCATTGGATACAGGAACCTGGCAAATGAATCCTCGAGCAGAGAACCA
ACTTGATCCAATGCTCATGAGTAAATTGAAGTAAAAATGAAGTATCAAATGAATCATCGA
CAATCCCTTTTGGAGGCCGAGCTTCAATGAAATAGACATACATGAAAGTATTAATGCATA
AGTGTGTAAATTTTCAGGACGAAATATGTTGAAATGAGGGTTGTGCAAAGAAAATAACTT
TATGATTTTTTAACATATGATACCATTCATCCATTTAAATCATTATTTTATTTTATTTTA
CAGACTGCATTTTAAGGTATTTCATACTGAATTTTTACGCACATATGCAGAATATCCTTG
TTTATTTATATATTTTTTTCCAAATTTTTCTGATAGTGGAAAGTTTAGTTTTTTTAAAAA
AAATGACCTTCATGAAAGCCCAAGCCAAAACGCCTCACTCACGTATCATACACACACAAA
AAAAGCTAAACGGACGACCATACACCTAATGCATACAACACGATACCATATCATACAAAC
TCAATGCATGATACAACGATGCTAAAGAACAGCTACACCACCTCAAACTACACCAATCAA
TCGAAAGATGAAAACAAGAATACTTCTTGAAGTCGTCGAAGTCCATCGTAACCAGGTCCC
GTGCAGAGATGAAGCTGTGCCCTATGAACCATGAACTCCAAAACAACGCCTTCAAAAAGG
ATACAACATCAAAATACTGCCATTTCCTGATACAAAGAATTATGATTTTCACACGGAGCA
ACACGAAGATCAGAGGATAGCTATAACAATGGGCTCATGAAGAAGACGACGCTCATGGAC
GTCGCTGAACGCGGGCAAGAGGAGCGTCATGGGAGGGGGCTTATGTGAAGCTTCCATAGG
GGCAAGCCTCGGCTGAATTATTGGAAGGCCATCGTGCAACTTATCAAACTTCAGCCCGTG
GAATGGGGCTGCAATTATGATGCATGCCATTTTGTTTCAAAAAGGAAAAATGATGCATGC
CATTTTCTACCCCGAGCAGTAAAAAAGAGCACAGCTGGCTAGCACACTGCCAGTAGGACA
GTAACACTTGCAAGCGATAAGTCATCAATCTTCCTCTCGAAACATGAGCCATGGTCCTTT
CCCAGCAACGATGGGATGAAATATATAATCCCTCCGTTTCAAAATAAATGTCTCAACTTT
GTACTACCTTTAGTATAAAGTTGTACTAAGCTTTTTGTATTATCTCTAGTACAAAGTTGT
ATTAAGCTTGAGACACTTATTTTGAGATGGAGGAAGTATATGTACTACACCTTTCCCTTA
AAACAAACAAAAAAGTGGACTACACCGTCATTTGCTCGAAAATTCGGAGCAGAGAAACAG
ACTCAAGTGCATGCTGCAACATCGAAAAAGATAGGCTACAATATCCACGGATCGAGAGAA
AAAACAGGAAGGAGCATACCAGTTTTGTGTGCATAGGAGAAGATCATAAGCAAACACAAA
GGGACCGCTCCCGCGACGCGCCGTGCGAGCACGTCATGGGATGTTACCCAGCCGCCGCCG
GAGCAGCGTCTCCTCATGCATCCTCTACCCTCGTTGCCACAAGTCCGTGCTGTCGGGCAA
AGCCAGGCTGGTGCTGGAGATGGCGGGGCCGTCTCTTCTCTCCGATGTGGGGGTTTGGCG
TGGGCTGGCGATCCCGAGTGAAGGCGCGGCGGCGTTGGGCAGAACTTGGAGGCGGTCGGT
CTTTGGTTCTTCGTTCCAGTCGTGGAGGGCTGGTCGAAGTGTTGATTCTCGCGTGGGTTG
GCGGCAGTCGACGACTGCATTGCCCAAATCCAGCCCGTCAGAGCCCAGAGAGTCCTGTGA
TTGTTGGCCCTGTTGTTCTTCGTGTCTCGATTTTTTGATTTGTTTCATCCTGTCCTCTTT
GATCTGGACACCGACGGGTTCCGGTCATTCGTTCAGAGATCTTAGCTTATGGCGCATGGC
GTCACTGGATATCTAGATCAGAATTGACCCGGACGGGTGTGCCCTCATCTTCGGCTAGAG
AGGCTTCATGATGCCATGGCGCGAAGCTTCGCTGCCTTGCGAGTGCCATAAGACATGTCT
AAGTATAGATTTCCATGGCATTGACAGTGGTAAAGGAAGTCATGGTGGCTATGATCGAAG
TCTTGTAACGAAGAATAGTAGTTTTGGTTGCGTTGAAGAATGGCAGCACAAGTTTTTTTC
CGTGTGTCGGGTGTTGAAGACTGGCAGCGGCGGCCTTGGCAGGAGGGGCCGACAACACAT
GTGGACAACCTTTTTGGGGGTGCTTTTCAAGCACCGAGCCGTGATCTTAAGGTAAAAGTC
CAAGGTCTGGTCTTTATTGGTTGTATCTGGCAATGGTCTTGTGAAGGCATTTTTTTGTAT
CTCGGACACTCTCCAGGATGAAAACTCAACATCTTTGATTGGACGACGACAATGCTTGTG
CATTGTTTCCTTCTTGGAGGCCTCGCTTCTAGAGAACCTTTTATGTAGTACGGGTGTTAT
CTTTGATGATGATTAGAGTGTTGTTGTGTGAGTGTTTCATCACTGCGCTCGAGTCTTTGT
TTTTATATTTCTCTCTTTTTAGATTTTTATTTTTGGCTGTGTGCATCCTTGATATCTTAT
TGATGCAGAGGTTGGATGTAATTGATATCTTCGCGATATTAATATATTCTTTTTTATTGA
AGAAAAACACAAAATTTATGGTATAAGCAGATGTTGATCATCACCACAATAGCTTTTTCA
CTTTGACCATAAAAGGGAGGTAAAATAACATCCTATCAGTCTATCACTATCAGTATAAGC
ACAGTAGGCACGCTGCCACCGAAAGTGCATTTCTGCTCCCGAGCTCATTTGAGCTCGGGT
GAACAGTAAAATCGAAAATAAATCTAAAAATGTTAAAAAAATTCTGAAATTTTTTGAGAC
CAACTTTGACAAAATTTCTAAATGCATGCAAAAATTTGGCATGAACTAACATTTTTACAA
GGCGTGACAAAATAAACAAAATGGATGCTCTGAAAATGCGCATTTTCAGAGTGTCTATTT
TGTTTATTTTTCCACGCCTTGTAGAAATGTTAGTTCATGTCAAATTTTTGCATGCACTAA
AAACTTTTGTCAAAGTTGGTCTCAAAAAAATTTCAGTATTTTTTAAACATCTTTTGAAAA
TTTTCCGATTTTACTGTTCATCCGAGGTCAAATGAGTTCGGGAGCGGATACTCCACGTCC
CGCTGCCACTGCCATTACACTGGCATCCTCACCACCGTCGTTGAGCCGAGAATGGGAGAA
AAATGGATCCTGCCTATTTACGTGAAAAGAGACCACATCGGTACAACGATTTATTGCCGT
CCGTCCCTTTCTCTGCCCGAGCCCATAGCAGTGCGGCATGTGCGAGGCCATTGCCGCCAG
CCCCTTTCTCACGTATGCCTTTCTCGGTCAAGGGGCCAAGAAGTCCATCCTCGAGGAGGA
ATCCAGAAGCGAAGCTTAGTAGGAGACTAGGAGTATATATCACTGCTGCACATTTGAGAG
GAGAGGCGGAGGGAGGGGGAGGAAGAAGAAAGAGGAAGAGGGTTTAACTACGTGGCATGG
AAATCATGGCATAGTTGGTTCTTTCTTCTTTCTCTTCCTCTCTCTGCCGCTTGTTCTTTC
TTCTTCGCAAGCAGCAGTCTCGATCTGGACCCTCGCAGCCAGCCGCTGCAGAGAGGGAGG
ACAGGCCGCCAGCATTGCCGGCTGCGCTCTGCCACGCCCGGCGCAAGGTGAGTTGATGAT
CCCAGGGCCGGGCTACCTCTCTTCTTCCCCGAATCTCTGCCTGCAAACTAGTGCATCGAC
ACTATATATGTAAGCTATCGATTCATGTATGCAGAGACAAGCGGGATGGACGGCTTGGAA
GGTTTTGAGTTCTTCCAGATCATACTTGAGAAGCCCTCCAGCAGGCTGGTATATAGTGCA
AGATGTCCCTTCCCTTTGTGCACGTTTCTTTATCGCTCTGCTGCCTGTGCCTAGTGTTTG
ATCGGTTCAGTTAATGCTTGACCATCGCTGCAGAGGCTGCCTGACAAGTTTACGATGGTG
CTGCTACACGGAGGCAAGCCCCAGGAAGCAGTGAAGCTGCGGGAGGCCGGCCATGGGCGT
CGCTTATGGGACGTGAAGGTGGTGTTGGATGCCGACGGCCACATGTACCTAGGGAGCGGT
TGGGAGCAGTTCGCCCGTGCCCACGACCTGCGGCTCGGCTACTTCCTCGAGTTCAGCTAC
GACGGCGATGCCGTGCTCACCGTCAAGGTGTTCGACGTGAACATGTGCCGCAGGCACTAC
AAACACGACAACGGTGCCAGTACGCCTCTTCTTCCTCTTCTTCGTCTTCGTTCCAGTACA
ATGGTTGTAGTTTGTAGTAAGAATTAATTAAAGAAGGATGCTTTTTTGCATTTGGCCAGG
CAGTGGGAGCAGCAGCGACGGTGACAATGAGAGCAAGAACAGCAGCGTCGGTGACAGTGG
CAGCAACGACGGCGGCGCCGGTGACAATGGCACCAACAACAGCAGCATGGTGGAGATGGA
GGTCGAGAACGGGCCGACATCGCAGTTCAGCGCCATGCTGAGGAAATGCAACCTAGGCAA
GAAGCAGGAACAGTACCTGGTGAGTGCGCTCTTCATGCTCGAGCATGACCAGTCAAGCGT
GTTGATATATCCACGAGGTGCTATCTGGTCACTGATTCCATCCGCTGCTCGCCGGCCGTG
GCGGACGCGCGCAGAACGTGCCGGTGGATTTCCAGCTCGCGCACGCGTACGCGGAGAGGA
GCAAGGTGGAGCTGCGGATGCGCGGCAAGTCGTGGCCCGTGCACCTGAAGCACAACCCCA
AGACGAGCGGCAGGCCCCGCGCGTCGTTCAGGTACGGGTGGCACCAGTTCTGCGTCGACA
ACAGCCTCGGCGAGGGAGATACCTGCTTCTTCCGAGCGATCCGCCAAGGAAGCGGCGGCG
GCGACGACCACCTGCTCAAGGTGGAGGTGAGGAAGCCAGACGGCAGCTTCCTGGTCTGAG
GCGAGGCCGGTGGCAGCCGGCCTCCGTTGCATGCATCGGCCTGGGGTTGGCCGGCGTGAC
TGAGTGCGTTATTATGATTTGCTTATGATAACTGTAAGACCTTAATTCTCTGTACTACTC
GACTGCTGATGCTACTAGCAGCGTACGTGAGTGACTAAACCTGGCTGTGTTTATCCGCGT
GCAAATGATTATTGTTGAGCATGTCAATCCCTCAGCACGGCCGCGAGGCTGAGTGGTGCT
GCATCGATTGTTTCCTGCATTGCCATTCCAAGCAAACGCGACGACGCCGGCCCTGAGCTG
TAGAACGTGGGGGTGCTCTGGAGCATTGCGAGCCTTGCATGGTTTTGCCCAGTCCGTCCC
ACATGAGCTTTCCGCGCAACTTTCTTCCCGTGTGATTTGTGTCCCGTACATGTACAGTGG
AGTGGTATGGTGAGTAATGGCAACTCCAACTGACCGACGCAAACACACGTGGATTTGGGT
GGGCCTAAGGGCGACGTCCGGCCCCTTCTTTGTTTTGCTGCTCAAGGCGTCCAAAAATGA
TAGACCTATAAAAACTTGCAAATGTTTACTTAACCTTTCAAACTAACTCTTCTCTCCTCC
CTGATTTTCAGTGGGGGTGGGGNNNCTCATCCCTCAATTACCAATCACAATCGTACACAT
CAGTTTGTACGTAAAATCTTTACGTAAGCCTTTGTAGGTGTAACATTACTCCAAGGCGTC
CAACCGACAGACGCATTTCGTTCCCGCAGCCAGTACGTGGCCATATTTTTACACAACCTT
TGCATGCAAATCAACATTGTCCAAAGTATAAAATTACATAGTTTTTACAATAAAAAAATT
CATAGTTTACAAACCAAATGACCCTAGCCGCCGCCGGCCAACCTTCCTCCTCCGCCCCTC
CTCCCCTGCCGCCGCCGGCAAGCTCCACCGGGCAAAGCCCGCTTGGGGTCGGCGGCGGCA
GGCCCTCCCTTCCCCGTGTTAGGAATAAGCAACTTGTAT