| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
| No map location |  |
No map location |
Predicted Genes from contig_135209
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_4514 |
8 |
3143 bp |
MLOC_4514.1 |
Available |
Available |
LOC_Os03g47790.3, FRAME:-3, EVALUE:5e-55, 13103.m05153 protein transposon protein, putative, unclassified, expressed |
| MLOC_4513 |
1 |
1054 bp |
MLOC_4513.1 |
Available |
Available |
None |
| MLOC_4512 |
2 |
2208 bp |
MLOC_4512.2 |
Available |
Available |
LOC_Os03g47780.1, FRAME:+2, EVALUE:0.0, 13103.m05149 protein WD repeat-containing protein, putative, expressed |
CDS Structure of MLOC_4514
CDS Structure of MLOC_4513
CDS Structure of MLOC_4512
Contig Sequence (9274 bp)
>contig_135209 9274 assembly3_WGSMorex_rbca.fasta
GCCCCGCCCCGCCCCGCCCGCCCGGCGCTCGGCACCACCGGGCCCCTCTGGCGCCTCTGC
AAGCCGGCGCCCGCCGCCCAGTCCGCTCTCCGCCGACTCCGGCGCTCGGCCGGCAGCCCT
GCCCGGCGGCCAGCCTTTAGCCCGATTTGAGGACTTGAGGTGAGTTGCCCATTCCACCGA
TTTCTGATCTAGGGTTTGATCTTTGCTCTCTGTTGCATCAATCGGGCGGAAGAGTCAAGT
ATACTCCGTTGACTAAATAATCAGTACATGAACACACTGTCCTGTGAACACATACACATG
AATTTTGCTATCCGGTGAATGCATGAACACATGATCAATGACATGATAATGATTTGTCTG
ATTGTTTGCCACTCTAACAAATTAACAGTGCCACGTGTTCTTCTTTGAACTTCTCAAGGT
ATGTAGTACTGTATTATGTAGGCTTCTCTTAAGCAAAATAGAGAATTTTAGGGTGTCTGT
AACTGTAAGGCCATGTTGATCTTATTTCTATGTGCTACTGGTAAATTAATTAGAACGTTG
GCATGTCATATTTGTTGTCGATTTTTTTTAAGTGGACTAACATCCTAGAAAGAAAATAGG
GCTTTTTTTTCATTTTGTGAGAACCAGGGTTTAAACCCTGGTTGGTAGCCTCACACCTGG
AGGCTGGAGGACTTACCACCGTACAACATTCTTTTTGTGCTGCAAAACTTCTAACTAAGT
AGTTCGTTTTTGCCCCTGTGTGAGTAGTGTTCCTGACTTACTTCCTGTGGCTCTGGTAAA
TGATCCGGTAAATGCTGTGTCGTGCTTGCCTAGGTTCCAAGGGGGCAGCCTCTAAAACAA
ATGCCGGCCTCCTTCCCGTGATTTTTTTTTAAAAGTAGCTAATGCACTGTTTCAGCTTCA
GAGAGGTTTTAAAAATTGAACATCAGACAACCGAGGCGCCAGTCAGATCTCTTCCATCTT
TTGGCACCATTCAGGCTCTATCTATTAAGCTAGTTTGATAAGTTTCCGTGTGTACTTTGA
CCAAACTCATGTGGGCAGGGCAAATTTCTTGGTTAGAATGGTATCTTCATCAGGCTATAA
GTGTGCATGCGTGTGTGTGTGTGTGTTACATTATGCCATCTTCATGTCCGCAACTCTCCT
TTGCTGCTTGGCTACTTTATGTTTTCCTTTTGATGAGAGTGTGTTTTTTATGTATGGGCA
GGACGGGTGTGTGAATGGCTCAACCTTCTGTCATTCTTGCAACTGCAAGTTATGATCACA
CAATCAGATTTTGGGAAGCCAAGAGTGGTCGCTGTTACCGCACTATTCAGTATCCGGACT
CGGTGAGTGTTGGCTCTGGGTTCTTCATTATCCCTATGACAAAAGTAATGAAGTACTCCC
TCTGTAAAGAAATATAAGAGCATTTAGATCGATACTTATATTTCTTTAAGGAGGGAGTAC
ATAAGGTAGATGGACCATACCCTTCCATAATTCTGTTCAAACAGTCCTACAGGACTACAA
ACAAATAATATATTATAGACAAATGCATAGGCTTGATTCGCTTCAAGACTTTGTTACATA
CTTGCAATCATATTCACCATATGCCTGTTGATAACCTGTATTTTGCAGCAAGTCAATCGC
CTTGAGATAACCCCGGACAAGCGATTCTTAGCCGCTGCTGGCAATTCCCATATCCGCCTT
TTTGATGTTAACTCAAATAGCCCACAACCGGTAATGTTACATGTTCTCTATAAGCAACCA
ATCTGGGCCAATGTGTTTCCGTTCCTTATTTACTCCATAAACCTAACAGGTAATTAGCTA
TGATTCGCATACTAGTAATGTGATGGCTGTGGGATTCCATTGTGATGGCAACTGGATGTA
CTCAGGTTCTGAGGATGGCACTGTGAGAATTTGGGATTTACGGTGAGGTTCTACATCTTA
TTATGTTGCTTGACTACAGCTCTTTTTCCCTTCACCTGCTGTTCTTCTCAAAAGTTTTTC
TCAAATAATTATTTTAATCAAGACGGAGAATCCGAAGCAAATCCATTTCTAGGTGCTAAT
ATGCAGACTCAAAGTATGTTGGGTAAACTAGATTAAATGGGATTAAGTGTCAATTGAATG
TAACTTGTTTAAGAAATCGTACCAATGCATTTCTCTATAAATCTTCTCTATCCAAATCTC
ATCAAATGGCACATGTGAGAGTTTGCTTATACTCTGTTTTTTTGTGTGTGAAGGAATAGT
GGTCTTGAAGTTGAAACTTTAACTAGATACTAATATATCTGAATCTTTATTCTTCTGTTG
ATCTGAATCTTTAGTCTTCAGAGAGGTTTCAAGTAGCTAAGGCACCCTTATAGTAATATA
TCCTGTGTTTTTGTTAATGATTTTCCTGTTCACGATGTATATTCTGATGATCTGAATCTT
TATTCTTCTGCATGTATGGTTTCAGTACTGCCACTTGTCAACGAGAGTATGAAAGTCGTG
CAGCTGTCAACACCGTGGTCCTACACCCGAATCAGGTTAGAATATGTTCTGGCAGTTCTT
AACCGATTTTAGTTTTCATTGTCCAAGCACATCACTGAATACTGCATTTGATCATAAGCT
TGTTCACTAGCTAATACTCTCTGAAAAGAAGGCTTATAATTTTTATCTGAAGTTAAATGA
TGCATAGTTGACCATATTTGTAGGGAAAACCATCAACAAATACAATCTTAAATGGATATA
ATATAAAAATATTTTGCGTTGTGTATCAAATTATATTAATTTCGTATCGTAGGTCCTCAT
AGTTTTTGGTATAAACTCGGTCAAACTTTGCACCGTTTTACTTCAGAAAAAATGTGTAGG
CTTCTTTTAAGAGACAGAGGGAGTAATGTTTTTTTTGTGTGTGTTCCATATTCATGAATC
ACTTCCCAACATTGTGATGCAGATCTGTTAACACCACCTTCTTAGTTGTTTAAATATGCT
TTCTTTGTATATTCAGAGCCTCTTAATTTCCTTGTAAGTGATGTGACATTCTTGCAGCAA
GCCTTAATGAGACTGCAAAGGCTTGCCACATCAATGTTCAAATTGCTGGCACCCCAGTTG
AATTCAGCTTGTTATCTCTCACCCCTTCTTTAAAATTACTGTTGAACTTGACTTTTGTCT
ACTTACTCCCCAGCTGATTAATGTTAACTTGCAGAATGGGTAGCTCAGGCAAGGGTTGTC
GTATTTAGCACATTTGGCGTGGTATTTTGTTCTTTCTATATCATTTAGTTCCATATTGTC
TCCTCAATGTTCCAGAAAGAACTAATATCTGGCGACCAGAATGGAAACATACGTGTATGG
GATTTGGCAGCCAATTCATGCAGCTGCGAGTTGGTAAGTTACATTTTTCAGATTTTAGGT
ACAAGTGTATACTTAAAGTGAGATGCAAGAACACGCAGTTCACGTGTTTGTTCCATTTAT
TCAGGTGCCAGAGGTTGATACAGCTGTAAGATCTCTGACAGTCATGTGGGATGGGAGTAT
GGTTGTTGCTGCAAATAACCGTGGGACATGTTACGTCTGGCGCTTGCTTAAGGGTACTCA
GGTTAGTGAGTCTGCAGATCTGCGTGCCACTATACAGGCTCTTGTAATTTCTGCATATAT
TTTTTCCCAAGCTGACGAGATCTCTTGTTTAGACGATCACCAGCTTTGAGCCCCTCCATA
AGCTGCAAGCCCATGATGGCTACATCCTGAAGTGCCTGCTTTCACCTGAATTTTGTGACC
CTAACAGGTATGTAATGATCAAAACGACCAATTTCCGCTATCACGACTCTTCTAAAATGA
CTCGTCCTAGTTCCCAGTCATTCATTTGCCAAACTGCATTTGTTCGCGTTAAAGTCTTTG
TAGTCAGCAGCATTCAGCTTCCAAAGCTCCAATAACATATTTACATCTCGGAAAATGACT
CCTCTACGCATATATTACCACAATGTACCACCAGACCTCGTTTTGCGGATTTCACGTGAA
ATGCCTTGGGTTGTGTATAGGTACCTTGCAACGGCATCATCTGACCACACTGTAAAGATC
TGGAACGTGGATGGCTTCAAGTTGGAAAAAACTTTAGTCGGTAATTTCCAGGCTCCTTTT
TGGCTTCTAAATCATCGAGCAAAACTTGCAAGGTTTCAATGGATATACAACTGAACGAAA
CGCGGGCACTTGACTTTGCAGGCCACCAGCGTTGGGTCTGGGACTGCGTTTTCTCAGTAG
ACGGTGCTTATTTGATAACAGGTACGCGCTAACTGCTCACACGACGCTGCCCGTCCTGCT
GGTAAATCGACGATTTAAAACCGAGCAAAATTATTTGGTGCCTTGCAGCTTCATCTGATA
CCACGGCAAGGCTCTGGACAATGTCGACCGGAGAGGCCATCAGGGTGTACCAGGGGCACC
ACAAAGCGACCGTCTGCTGCGCCCTCCATGACGGGGCTGAATCGGCGCCCTCGTAAGCAA
CACCGCCATGACTCGGCGTGCTTCTGTACATATCCAACAGCACCGTGCGCACTTCTAGAT
TTTCAGCGCCGATGAAGGTTTGATTTGCTGTAGTGCTAGATCGTGTAACAATGTATATGC
AGCCGAGTCTTTGTGGGCTGCACGCGGACAGTTTGTATGACTGCTTAGATTGGTGGATGT
TTATTTGTTTGCAAACGAAAATAATATGTTTACTGATGCCATTGGTTCTGCTTTGGTAAA
AATGTGAGCTAGAAATGACTTTCATTGAGATTGTTTCTTCTCAGGTTGGTTCTTTGCTAC
ACCCTCCGTCTGAAAATACTCATCGGAGAGATGAATATATCTAGACGTATTTCAATTTTA
GATACATCCATTTTTATTCATTTTTGTGACAAGTCTTTTTGGTTAGACGGCCAAACAGCT
CATGGCATAAGCATTTTTTTTTAAGCCGCCTCCCTTGAGATCAATAATTCGCTAAATGTT
TTTCAATCCAACGTGCCAGGGGAGAGGCCACCAACACCGTAGCTGAATAGCCTGAATACA
ACAACTCCTACACGTGAGCCATTTTGTTCTATGGTATTAGCATCAACCACAACACTAAAT
TAAAGCGGTTCTTTTTATCTCCGTTCTTGATGTTACTCATACAACATGATAATAAATTGA
AATATCCCAGAACAAGAAAAGGGAAAGAAAGAAGAAGAAAAAAAGATTACATCTAGCTCA
CTCGTTTTCTACTTGCACTCCCCCAATTGCGGGAAGCCAACTAGGGCAAACAATGAAGGA
TTAATACAAAGGTCCGATTATTTCATTCATAACAAAAGAGAGACAGGGGTTGAACAAAGG
AAGAAGAGCGCGGTACCATCGCAGGACCTCGTTGCGGGTTGGAAGAATTGGTCCCTGCTA
CCACCATCATGTTTCGACCTAACCATCATTGGGAGGCGCCTGTGATTCCAAGCCATCAAA
GACGAGATGAACGCACCGGCGCCGCAACCGACATCGATAGTGAGTTGACTGACGGGCGCA
CGTGGATGCTCGCGAGGTTGTGCGCACCGACCATCTGGGCAAGCATAAACATCTTCTGAA
ACGATGTTTGTCTACTTATGGATGCTGGTACACATAAGGATTGCTTGAAATTACTAATGT
AAAAATTGTCCATGAACAATTGCAAGTTCGATACACAAACATACTCCATCTCTTTGTGGA
CTGCCATGACCAAATTAAAAACAAAGACTCAGCAGTACAGAAGGTGGTAATGCATCTCAT
AGGAATGCTTAAAAACAAAGAGAAAAGACATAACGGGGAGAGGCATTACCAGCAGTGACA
CAGTTATAACTTACAAGACTAAAAAAAATAGCTTAGTGACGCAACCACTAACAAAGAAAT
GAAGCGGGACAAATATATTACCTAGTTGACCAAAACCATGTCATCCCCAGAAGCCTTGGC
AGCAACGGCTTCCAATTGTCTCCATGCCGACTCCCGTTGCTCCTCCAATTCTTTGGCTTT
TGCTACTTTCTCAATGTACTGCTGCTGGCACTCTTCAAATAGCTCACTATCCATGTCCAA
AAACATCTTACGCACATTTGCGGTCAGGCCATTAACAGCTTGGTTCCAGTGGCTCTGTAT
GTTCCTCTCAAGTGCTTCAAATATTATTGGAAGTATGACACCACGATTTTGGGCAATCAA
GCTTACAATGTGATCATTGTTCCATAAGAACAAAGCCCGCTCAGCAACCTGCCAAACAAA
ATAAACATTGACAATTAGGCAAAATATCAGATAAGTGAAGTGGTGATGCATCACAAACAA
TGCTCGTAATCACACTCGGTTCTTCAACAAGATCAGCAAGCAAAGAGATAAAGTCATGGT
GTGAACTAGCATAGCATGAAACAGACCAACAGCATGATGCAACAGTAGTGAGCAGTTCTC
TATTCAGCAGGGCTAGCTATACCATTATAACATGTATTGCAACAAGTATACCACTACAGC
TAACTACTTAACAGGCCTTAGCCCCACATCCCAGGATGGTGGGGGAGGTAATCTGACGAG
AACAACTGACAGCGTGACAGAACAAATACTTTCCTCTGAGCAACTTCCCATTACATATAA
TAATCATCGAAAATGAAACTTGTCAAATCAATATTGCTCGAAATGCCATCAAAGATAGCA
GATTTGGAAATGTACCGCTGGCACTTCTTGGGCAAAATTGCAAATGTGGCACGACTTTCT
TTTGTCAGGGAGAGAAAGGCGTGAGTAATTGCTACCGGGGTTTTAATTATCTCGTACATG
AACTGCTGACATCTAACTTTTTACAGGAGAAAGGACAATCAGAAAGCACGTTATAAAGTA
CAAACAACTGTAACATTAAATAGGTCAAAGCCCAAAACATACTGATTAAATGCAGTGAAG
AAACCCGCTTACATGTGCAGTTATCAGGAAGCGAATATATGATACATCTAATGCATTTCT
TTGGCATTGTGACAGACACTCCTAATATCTATAGCTTAATATTAAAGCTTCTTGATGGGC
TTCCTCAATCTTCTCCAATTTAAAGGACTCCCAAGAGAAATGGATTCAGAATTAAACTAG
TATGGTCAGTTGGTCACACATCCATAAACAATGCTCATAAGGAGAAAAATATATTTCCAT
ATGCAGATCAAAAACACATAAGTACTACCAAACAAGGCACAAGGGTGATGAATGCAAATA
GCTTAAGGAATGATATAGACACAGTACAGTGAAACCACGTGAGATTTTTTTTTTAAAGAA
CTGAAACCACAGGACATGAAATCAGATAAAGCGGCAAAAGAGCAACCGCATTCCAATTTG
GTGGCTCATGGGGTCCTGGCAACGGGGTCCCCCAGAGCGCGTCGCCTTGCGGGCCCCGTG
CTTGATGATCTTGTTGAACATGGCGGCAGATTGGGAAATCGGCGGCGTTGGATGGATCGA
TCGATCAATCCTCTTCACTTAACTTCCCTTGGCCTAGGGGATTTGGATTTGGAGATTCCG
TGGAGGTGGGGCTGGATGGCGGCGGCAGAGGGGGTGGAGGCAGGGTCAGCCGGTCAGAGG
AGGTGCGCGGAGGGAGGGGGAGGTGGGGAGATGTCATGGAGAATTAGGTTGCTGATTTGG
GGAAGGGAGAGAGAGAGGAGGAGGGGGGTCAAATGGGGAGGAAGACAAGGAAGACAAGGG
AGGCAGAGGGGGGTGGGAGGTGGGGTCAGCCGACCAAATGGGGAGGAGGAGGAGGAGGAG
GATCAAATGGAGTAGTAGTAGTATTTCAATTTTTCATTCACAAAAAGGGATTTATTTGGT
CAGATTTCCTTCATTTATTATTGACTTGAAGAGAAGAAATATTTATTTATATTATTTTAC
TGGCAAGATAACTGGCAGTTTCACGTCTTTCAATTCAACCTCTTCTTGACTCACACAAAA
AAAAAGGCAAGCTAATAACAGTAACATTCGTTTTTCTGCCTTCTTCTGTTTTTCCTTGCA
ACTTTTGCCTTCTCCATCTAATAAAGAGGTACTTTACAAAAAAGTATCCATTATAAAATT
TCGTCTAATGTGTAACACTGGAAATTAATCTGTTGACCATAAAAGTAACATCTATCTTCA
TCCGTCGATTTTGTTTAAAAAAGAGAGATTTTACATAACACGGAGGTAAAAAGATTTACA
TAACGGGAGCTGGAGTAGATTAAATCGCAGGCGGGGTCCAACTGGAAGGAAGGGGAAACA
AAGACGGACGATGGAGGACGGACGCACTAACTACGAGTGATGTGGAGACGGCGACAGGTC
TCGAGCTCAAGACACTGGCTATGATTGCCCGATTGGGCTTAAATACATATAGTTTCTTAA
TTATGAAATTACTCATCGTTTTATTTTTCAACCCATTTGCAATATATTGGACACCCTGTA
GCAAGTTTGTCCAAAATTTTGACTGGTAGGGAAGTTAAACTGTATTCATGGTCCCACTGC
CAGGACCTCATGAGCCGCCAAAGTGGAATGCAGTTGCTCTTTTGCTTGTCGATTCAGTCT
TCAAAGGTACTAATAGGGATAGTGTATAAGGATGAGCGTATGTGAGCGTCTTGTAGTGTT
TTTTTATTCAAGAATCGCAGAATCAGCTTTCGCTTTAATTAATAATCCCTCCCTGCAATC
CCCAGGCACACTAGCGAAATCTAGTAGTTAGCCAACGCTTGGGGAGGAAAGTGCTTGGGT
TCAAATAACACTGAAAAGTTTGAAGTTTGACCAACTACTCTCCATCAAAACCCAGTAACA
CAGAATTCTGGTGAAAATTACTGAACAACATAACAAGAAAATGTCCATACTCGCACAATC
ACTAGAAAATAAACTGGAAACCAGCCTGCAATTAGTATCTCACTCTACCATAAGACCTAA
TAATTAGGTTCTTAAACGTTAAATCCACTGGTAAAAATATGCAAGATTGAACTAATCCTG
AAGATTCATCACCATCGTTGCAAATAGTAAACTTCTTATGATGCAGAGTTCACTTTGGAG
TATAACAATAGTCTAAAATGGATATAATTTCAGCAGACAGTCTTCGATAAAAGATGGTAA
AAACGAAACTTGTATCCTCTTTTGTGTGTGTGTTGTGTTGTGGCGGGGGGGTCTGGTAGA
TGAGCTTCAAGGATTCACTTACATGGTACAAGCAGATGCCTACCAATAGAAAAGTACAAG
ATGGCGATGGCGTGCATGCCTTATAGTTGTTCTTAACTTCTTATAACTTGAAAACTACTT
AACTCCCTCCGTTCCTAAATATAAGTCCCTTTAGAGATTCCACTATGGACTATATACGGA
TGTACATAGACATATTTTAGAGTGTAGATTTACT
