Contig Data
morexGenes
Links



Map Locations of contig_135174 (6130 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_135174

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_4481 1 240 bp None Available Available None
MLOC_4479 1 225 bp None Available Available None
MLOC_4480 5 1231 bp MLOC_4480.1 Available Available LOC_Os07g02710.1, FRAME:-1, EVALUE:5e-75, 13107.m00197 protein expressed protein





CDS Structure of MLOC_4481






CDS Structure of MLOC_4479






CDS Structure of MLOC_4480






Contig Sequence (6130 bp)

>contig_135174 6130 assembly3_WGSMorex_rbca.fasta
CCCAACGGCGGTCATGAAGGCTGGCCTGCGGTTACTGCTAGGGTTAAATCGGTTAGGCTA
ATACCATGTTAGGTTAGGCTAATACCATGTTAGAAGAGATGGAGAGGGATTGGTGAAACT
TATCTCTTTCATCTTAAAAGTCACTTACATTTTTTTTCATTCTTTCGTAATTATTATCCT
GATGCATACGCGAATTCATTTTTCTCCTTTGCAAGCCACAAATGAAGATAATATTTTTCA
TATACATATTTGCAGAATATATATGAATGGTTTTCTTAAAACTTGTTTTAAGTTTGCAAC
GGCACTTACGAACCAGATCAAGAATCCCGACTCTAAATTGCTTAAACCAACCCACATGAA
TTCAAATCTCAGAAGTTAACCAAGCATGGACCCTCTATTACACAAAATCCAAGAAATTAT
TTAGCATCCACGGTTCAGACAAAGACTACAGAGACAACAAACACACACCATGTCAGCATG
GTACATTTTGAGGCCTACGTCATTGACATAAATCCAACACAACTATGACAACACAATCCC
GCTTGATCCATGCATCCACGAAAACGCTCACCAGAAACCAAATTCAGCAGAAATCTAGAC
GAAAATTGGAACACCTGTCGATTTACCAAATAACGTTAGCAAGACATTCCTAGCTAAAAA
TAAAATAAGAAAGCAATATGGTCCACTGCAATCCATGTAAACATAGGACGCAAATGATTG
GTAAATGCTAGCACTTACAGGAAAAGGGGGGCACTCCCAACAAAAATGCCTCGGGTGACA
AATCGATGACCGTGAAAAGCAGTATGCAATTAGCAGGAGCAACAATCTATTTACACCACG
TGAGAAATGTTAGATCGTCAAGCTCAGATTCATCAGACCAATTCGGACCTCTCAGCAATT
AACAGTGCCTCGAGTTCCTCTCTCCGCTTCTCCAGCTCCTGGAATACCAACAGAAATTAA
GGAATGGTCAGCATATGACATCATGGTAGCTACCAAAAAAAAATCGAGAGTACGCCTAGG
CGTACATTAGCTTTATAGAAGGCAGAATTTGAGATACAAGAAACTAAACTTGTTAAGAAG
AAACTTCAGCAGTTCATAAAGGCAGTGAATATAACGGTGTGCAGCAGACAGTTGCTTGAC
TTGACCAAAGGATTAGAACAATTGTATCCTCTTCAATAAATGGGTAATAATGACTCTCTT
GTGAAATGTTATTTTGTCAATCTCAAGGTATGACTCGGAAAACCTTCATACCAAACTTAC
CAATCATAGCGGAAGAATCATACTCCGTATGACATATGTATGCATTAAATGTACAGTAAC
CAATGATCAAAACAAGAGTAAACAACCTACCGCTATACAGACTCAAGCTTAATTTAAATG
CATTCATTACTCTTAACGAAAATAGGGACCGAGTACTTGCCTGCAGATCTTTTGCTGCTT
GCTCTCGTGACGTTGCTTTCTGCTGCCTAGAACGCTTTAGTACACCAAGACATAATACCC
CCTACAGATTCAAAGTTGTTACTCCCTCTCTCTCGGTTTATAGGTCATGCACGTAGTTCT
AGCTCATCGATTTAACTAGCTAAATATGAGTTATATGTCAACAAAAGTATATCATTGGAT
TCTTAAGCGGACGTAGTTTCTAAATATATATTTTTTATCAAATATAATATGTATTTTGCT
AGTTAAATTGTCAACCTAAAATGACGCGCAAGACTTATAAACCGAGACAGAGGGAGTACT
GCAAGTAAAAACGTGGTGGTACAACATAAACAAACTCCAATACTGATAATTTGTTCCACT
GCACATTGCAGGATAATGCTTTGCTAATTGCTATAACAGGAATGCCTGGTTGGCAATATC
TGATACTAGTGCTTGTGAGGAGCTGAATTCCAAGTTTTCAACTGGTCTATAATGCCATCT
ATAGTCATTCAAATAGGCTCGGATAGTTGCTTGGCTAATTTTCTGGAACAGGAAATGATT
ACAAAATTACATGGCATCAAATTTTGCTAACAAAATTAATTTTCAGCTTTTTTTGTTGAA
TTTTAACTTTCAGGATAGAAAGGCATCATAGTTTATAACAGGACACAGACTAACACCCAA
AGTTCTCTAGACTCACCGAGATTACATAGATTAGTCCACATGCAAGGAGCAGATAGCTGG
CAATGTCCTGAAGCAAAATCAGATCGCTCCTTTCAACGTTTGGGTATGCCTTCGTCATGA
CAGCAACACTGCCAGGAACCAAAGGAAAAATGAATAACAAGAGTAACAGACATGGGTTAC
ATTTTAATACTGGCAAGAAATAATCAATAGCACTTCCCATTCCTGTTTCTGTAATCATGA
CACTGCTCATAGTGTCCCAGGAAACAAATAAAGGGCAGCCCGGTGCATGTAGCTCCCGCT
TGCGCAGGGTCCGGGGAAGGGTCCGACCACTTTTGGTCTATTGTACGCAGCCTTTCCCTA
CATTTCTGCAAGAGGCAGTTTTCAGGACTTGAACCCATGACCTCANNNNNNCAAGGCAGC
AGCTTTACCACTGCGCCAAGGCTCCCCTTCCCCAGGAAACAAATGAAAACTTAAAATGTT
CAGGATCCCAGAATTTTTACAGTGGCTGGTGCATGCAATTGTGATAGTTCTTGGTGCATG
TGCTGTGAATGCAAAGATGTCAATATGGTGAAACGCCCCATGATGATGACTTGATAAGAG
CTTTAATCTTAACTCATGCCTAAGTTCACAAGTTTTATCATCCTAGTACTATTCAAGTAT
TTCACTAAACCGTGCACACTTAATACTCTTGCATTTCTAGTCACCCTGGTTAAAACTATG
TCGATGAATTGATAACATGAAACCTAGATAAAGACACAGGAGATATTTCTAGCAGAATTA
AGGTGGCCTCCTGTGCTCCATAAGCTACAAAGTATTCCTCTGCAATGATGCAGGCTAACA
TAGGCAATCTTGGGCTACCTCAATTCTGCTATGGTGCCTCTGAGCATGTGAGGACCACAA
TCCACTGAAAAGGCAAAGAGGGGGAGGGAGGGAGGGAGGGGGGTATAATGATTGCATGGG
ATAAGAAAATATGGATAAAATGAAGTCCAGTGTTGATCATAGCTGTCCTTGCTGTTGTAA
TAGTAGTATAGTACTAATACGAAATATGCATCTCATCAGCCAATTTGCTGATGAAGGTTA
AGGTTGCTGGATAGAAGAAAGGTCTGTGTTTGTCATTTTTTTTCTATATGTCATAGCTAT
GCTTAAGGGTAGTGCTCGTGAAATCAGCAATTTATCTTTATCTTATACACTATATATCTA
GTAACAGCCACTTTATGAAACCACACCTCCCACAATTTTCAAGAATCATTCAGTTTGAAA
ATTATGAAGGCACACCGCTCACAATTTTCTTTCGAGGTTTATTTTGTCTATTACTTCCAA
AAATGAAGGAACCAAAACTAATCTACCAATTATATAGGTAAACTCTAGATGAGCATCAAC
GCTAAGCATATGCATGAAACATTCTGAAAAATTGTTAAACTATGCACCACTTCAGCTTGC
ACAGGGTCTGCGGAAGGGTCGGACCAAGAATTGAATTTTGTGAACATAATAGGAGTTGAG
AAAAATATAGTCATCCTGAATACTTACAATATCTGTAGCATCCCCCTTGCAGGCCAGTAT
TCCAATATCTATTCATGTCAAAGAGTAGAAAGTTTACAAAACTAGAGAGCCACTAAAATT
CTAACTCCACTCACGGACAACAAAATTGCATGAAGCCTAATCCATAAGTTTAAATCTAAT
GGGCAGCCAAAATAAGACTTGGTGTTCGCCGACAGGAGCAGTTAGGGAATCTCCAGAGTT
CCATCATCACCATTGGTGACGATGTGCAAGAAAAAAAAAGGAAAGAGAGCAAGTTTGTAT
GTTCCTAAACCAACAAGCCAAGCACAATCTCCGAGGTGGGAAAGAGAGCAAGCCTGTATA
TTCTGTCTCCTCCTAGAGGCAACTTAAGAGTTAAGATTACACTCAATTGGAGTGAGAGAT
GACCTTCAAAGATAATCTGATCATTCACTATAATAATGGCATGGCATCTAAAAAATAAAT
AATCTCCTAAATTAAAGAAACTAAATGGATTGCTACCTAATAAACCAATTAAAATTCCGA
CAGCGACATAGCGCATTCCACTATCAGTGAATGGTAGCAAACAATTGATTGTGTGAAGCA
AGCAACATAGGCACCATTTGGAGGCTGAAGCACAAAATAAATTACATGTAACCTACGCAT
TTTTTATCATTCAGAAAAACGGTTCAGATTGGACAAACCTCAACACCTCCAAAAGATGCA
TTTTTCTTCATTACAAATCCTAAAGATACACACATATTAAGGCAGGGGCGCCGGGCAACG
AAGCGAACCTTGCAGAATTTGATGATGAATCCCCACTCGGTCTCGAGGACGGCCACGAAC
AGCGAGATCACCACCGCATAGCAGCGGAATATGCCCCCGAATATCTGAAAGCCCGGCAGG
AAGACACCGAATCAGCCCGTGAGCGCGGCGCGTCGAGCAGGATTGAAAGTGGAAGGGGGG
ACTCACGTAGCCGCCGTTGCGGCGGAAGGACTGGACGGCGGAGAGGACGTTGACAGCGAC
GCAGAGCAAAGCGGTGGCGGCCGTGACGACGCTGAAGCAGCCGCACACGATGAGGAGCGG
GTCCCCGCGGGAGGGTCGCCGCTGCACTCGCGGCGTGTCCCCGCCGCTTCCGCTGCCGCT
GCCACCAGCGGCCGGCGGCAACTCCGAGGGGCCCGGCGCGGAGGACGACGACGCCTCCCT
GGCCATGGCGGACGAGCTAGGGTTAGGTATTGTTCCTTGCCGAGGGTTCGGCTTCGAGGC
GTCGATGAGGTGGCGATGCCGAGGGCGGAGCGAGTGAGAGGTGTGAGGTGTACGAGTGAC
CTTATAAAGCGGGCGAGGAAGAAGCGGATGGTGGCGCCCGTGGGCCGGGTGCACGGGGTC
GGAGGACGCACGCGGGGAGGGGCGTCGACCTGTAAGTGGGGCCAAGGGCTGATGGCCACG
TGGGGGTGTGAGGTGGAAAGGCAAGCCAATGGAAACCCAGCTCGTAGGTGTGTAGTTGGC
ATCAAGAGTATTCCATACGGCCATACTCATTACTCCATACTGTTAGGCAGGGAAAAGAAT
ATTTTAGACTTTCCTCATAGGAGATTTTCAGAGCTCCATAATTCAGCATCCGATAATTTA
GGACAACTCCAACCGGCCGACCCAAACGGACGGCAATTCTGTGTTTTTTTTGTTCGTTTG
GGTCGATCCAGCGAACACCAACGTCCGTTTCGATGTTTGGATCGACGCACGCGCCCAACG
CTGGCCCGACCTACTTTGCCGACGCGTGAAAAAAAATTCAAACATTTTTGAAAATAAAAA
ACAAACGTTAATTAAACATTAAAGCCGACCATGAAGGTAGGCAAGAGTTCATGCGTCCCT
TTACACTAATTAAACATTTAAAAAACCTAAACTACGAGGCTGCCTTAGGCGGCGGCGGCG
ACGTCGGGGTGAGTGAGGTCAACCAGCGTCGGCGGAGGGCCGGCCTAGTGGAACGTCGTG
TTCCAGAGTGTCACTGCCTCCGCTTCTGTCATCTGTCCCATCGGCGCAGATATGCTCCTC
GCAGTGCCAGAGCAGTACGGGCACACTCCTCCTCCTCCATCTCCAGTCGTTCCTCCAACG
CCTCTCGCTCGAGCGCCATCTGTCGACGACCGTCGGCGCGCTCCTGCGCGAGGTGCAGCG
CCCTCCAGTGTTGGAGGTAGGCGGCCTCCTGTTACGGTGTCGCGCCCAACCAGATGGGCG
GTGCGTTGGCCCACTCACAGAGGCAGCCGGTCCACTGGTAGACCTCCGGCTGCGGCTCGC
TCTTCGGCGGAGGAGATGCGACGCAGTCGCCGGCGGCGAACAACGTGATGGCCTCCGCGA
GCTGCGCCTCATACGCCGCGTCCTCCTCCTCGGCCTTGCGTCGCTCTTCGTCTTCCCTCT
CGCGGAGTGCGGCTGCCAGCGCCGCCTGGTAGGCGGCCTCTGCGTCCTCGTCCTCGTCAC
TAACGACGGGCGGGGCTGTTGGGGAACGTTGCATNNNNNNNNAAAAAAATCCTATGCACA
CGCAATACCT