Contig Data
morexGenes
Links



Map Locations of contig_135103 (5868 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_135103

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_4408 1 2583 bp MLOC_4408.1 Available Available LOC_Os09g33970.1, FRAME:-1, EVALUE:0.0, 13109.m03401 protein expressed protein





CDS Structure of MLOC_4408






Contig Sequence (5868 bp)

>contig_135103 5868 assembly3_WGSMorex_rbca.fasta
ATTTCTCATCATGGTGGAATTAACAATGGACAGGTTGATTTCTCAACAAAATAGAATAAG
ACTGACCACATTAATTAGTTAGCTTATTATTTTAATAAANNNNNNTGATTATAAAAAGAT
TAAAAGCGTGTGGTATTTTTTTTCTGTTGCAACGCACGGGCTCTTTTGCTAGTTTAGAGC
CAAGTCAGTTACTCCCTCCGTTCCTAAATATATGTCTTTTTAGAGGTTTCACTAAAAAAC
TACATACGGCCATGCTTGAAACTTATTTTGCTTTGTATGTAGTCACTTAGTGAAATCTCT
TAAAAGACTTATATTTGTTCCTAAATATAAGTCTTTTTAAAGGTTTCACTAGAAAACTAC
ATACGGCCATGATTGAAACTCATTTTGCTTCGTATGTAGTCACTCAGTGAAATCTCTTAA
AAGACTTATAACAGAGGGAGTACATTCAAGACGAGCATGGCTATTGCTGATGGGCAAATA
GAAGCAAATAACTGAATAATGCTAGTACTGTAGTGAAGTTGTGAAGTTGCAAAGTACTGT
ATAACCAAAAAAAGGGGGAATAGCCAAGCATATACTGTCATGCAAATATTCGGAATGGAG
TATTTCTCTTCCAAGTACAAGCAGAGAATTTGAGAAGGTAACAGCCAACTGCTGAATGTA
GGGCGGATTGTGAATTTATCTGATGTTGCTCCGAAGTATTTGCGGGTGTGCCAAGGACAA
ATGAAGCCTGGCCTAAAAACGAGCCACTTACAGAACTTGGCATATCAACTCTAGTAATAA
TTATGCTACAGTATCTCTGGGCTCAAAACTGGCATGCAAATATTCAGAGATTTATCGGAT
CAGCTATACATGTAGTATAACCTTTGCCAAGGCCATGAAAGGTCATTCACGAGTGATCAA
CAGCAGCTCTTCCTTAATCATCACAGACAACGGGGAGGATGGCAGGTTCCGATTGACATG
GGAGTTTAACCATGACTCCGTGTCACTTTGTGCTTGCCACGGCTCAATCATCGTTGTCTT
GGTCGTTTCCATCATGGTGATTGTCCCCATAGTCGACCCATGGGAGCAGTGATTCCAGGA
AGACTAACGCAGCATTGCGCCCAGCAACTTCACGGGGAGCACGGAATCTCTCAGGCCCGG
CTTCTTGTTCAACAGGCGGCATATCATGCCCCATTCCTGGACCAACCATAAATGGCCGCA
GTTCTTCTGGAGGGAGCGATGGTGTTGTGTCGGAGAAGTCTGAAACAAGCAGATGAGAGT
ACCTGCAAAGTAGGACACGGCTTATCAAAATATTTCTTCAAGATCGCCTGGGGAGCCAAG
ACCCAAAAAACAGAGCATATATTATTAGATCAACATGGTATGAATAGGAATATAATTAGT
ACAGCTGGCACAAACAGCTTGTCTTTAGTTTCACTTTCATGTAAGTACTCCCTCTGTAAT
AAAATATAATAGCGTTTAGATCACTATTTTAGTGATCTGAACGCTCTTATATTTCTTTAC
GGAGGGAGTATCATACATGACTAACACCACAGATCCAACAGTGCTGATAAACTGAGAAGG
GGTTGGTGAGCTAAACCTTGAATGCTATACTTCTATACGGCCTTTAAGATGGATGCAGAA
TTTACACCTCAAATTGCTATTCATAGAATGTAATCTGATTGGTTCAAAGATCAAACTAAA
CCAAGCTTCAGTTGCCAGCAATTTAATAAAAGGAAGAAATAGGCACAAATCAATTAATCA
AAAAGTACTGACTGAAAAAAATGGAAGACATAATCAAAGAGGAAGGATTGACAGAATTCC
AAATGGCATGCCAAGATTTCGGAGCAACTTACTCATTCTTTTCTGAAGAGAATGCCTCTT
TCCTAACACATGCCCAGTCCTGGGCTTCTCTGCTATCCTGCTTTAGTGATTCAATCACCA
AAAGAGCAGCTTCTTTGAGTAAGTTCTGAAGTTCCGGGAACCTCCACATGATATAATGAC
GCTCAACATATATGTTAATCACATGCTCAAGTGATGGGCTTCCTGGCTTTGCTGATCCAA
AGAACACATTCTTGAGTATTTGGGTCCATGAAGAGTCCTTCAAAGGAGCCTTGTCAACAA
TCTTAGAAAGCACCAGAGGGTGAAGCATCAATGCTTGCTTCATGAGGTCAATAGCTGTTG
ACTTGTCAGCATGATCAGAAACATCCTCAGATGCCGCATCACGTTCAAGATAAAACCGTG
CAATGGCTAGAGAAAAGGAGAAACTAGGGAACAGCCAAAGGGAGTTATCACACTGGTACT
CTTCAGCAAACTGCTCTAACCATTTGTGCTGATGCGATCTTAGAGCAAAGTAATCAATGC
AAAACAGAGCACCCTTGGGGTCGTCAGAATCCAATGACAAAAGAAACTTGCAGGCCTCTA
AAGCTGAACGGTGACAACCACGCCTATCCAGGTTTTTCATGTGACTGAAAAGGGCTGTAA
AAAATGGCTTATTTATGTCATGGCCGTATTTCAACTGGTAGTTGCCCTGCAGTGGATTAA
ACAATGGATGCCAAGCACACTCCAGTGCAAACAGACACTTCTCGACAGCGTCTGCTGATG
ATTGATGTTCTCCAGAATATTTGAACAGATCAGCAAATGTCAATAACGAGTCTGGATGGT
AGGGGTATTTTGCTAATATAGCGGCAATGGCATTGAGGTCATTGGCTGATTTGGCAGCTT
CAAACAATTCCTGCACATGGCTGACAGAAGGATCATATTCGTACCTGCAAGCATTAAACA
GCATGGTCATTTAAAAAAGTCATGAACTCTAGAACAGATTTCTGCTAAACTACTTCTGAA
ATTTTACTACACCTGAAGAACTACGTAAGCTTCCTATACGAAGAACATACAATGAACACA
ATGGGAAGCATGAGCAGTACAAGTAATGATTACTTGTACACTGTGCCCAAGCAAATTAGT
GATGAGCCCAAATGATGCCAAGCCAAACAATCCAAAACATGCATAAATCACAGTGAATAC
ACTAGATCCAACTCGAGACAGAAGTAATCATGCTCTGACAGACTGGTGTCCTTAAAGGCC
TATTACCAAGAGATCAGTGCGTAAATGCTGTGGAGCGATTAACCTTTGCATGAAAGGTAT
ATATAGCCCTCCAAAAGAATTGCCTACTCGCATGTTCAAAGAAACTCGACCACTAATTAT
GGATAATGGATGAATACAAAATGTTCTACTAAAAGCATCTCCACAAAAGAGCTTGGAAGA
ATAATTTTCTTCTCCGTGTTCAACCAAACTTGACTACTGGCTAAGGATGTAGGCGGACAT
CCCGCATAGTCCCACAAAATCAATCAGCTAGTACAAAATAAACTAACTCTATCAAACAAA
AGCTACAACTAACTTTACTCATCTTGTATACGAAGCGGGATGGATCCGGGCGCCGCTCTA
CATCCCTACTACTGGCTATGGATGAATCAAGAAACGGATTGTTCTCCGAACATCTCATCA
AGAAACTACCTAGTATTATAACTGTTTGACATACAAATCTATACCATATCACGATGCACA
CTGCAGAGAAAAGGATATATCCTCACCTGAAGTAATTTAAACTGCCCTTTGTCTCAACAA
GATTCATTGACATTGACTTATCCCATGGTGGCCAGAAGCCAGGTGGAGATACAAGGAGGG
TTCTTCTAGGATTAAGGGCAGCACGCCTAACACCACGCACTTGCCTTGAAGTGCCAGGCA
TATTCCGCTGGTTTTCAAGTGAATCAACTACCTTTGATCCAAAAATGCGCCTCATCTCAT
TTTCAGCCTTGAGATGTTTGGGATCAATTGCAATAACTGAGGATGTCCCGACAGCTGTTT
CATTTGTCTCAATCTCCTTCCCAGTTGCTCTGTCATTTTGATGAACACTTTTTTGCATGG
GCTTCTTTTCAATAGCTAGATCTTCCAGAATTGAGTCAAGAGATTTCTCAACCCTCGACT
TCGTCGAGACTGGTGGTTCCGCCTTGCCCTTTTTCTTCTTCTTCTTTGATTTCTTGTTTG
TTTCAGGAACAGCACCGTTAGGCTTCTTTTTCACAGATTGTTTTTGTTCTGTATAACTCA
CAGTTTGATCAGTATGCGCTTCATCTTCCTGCAGTGGGGTAAGCACATACATAGGATTAA
AATCAATTCATCAACCATGACTGTATAATACATAATTTGACTAGGCATGAATGAGGTAGT
GCTACATCACAGGATCTGGATAACTAAGATTTGTAAATATGCAACCAACTCTGTTTCACC
TTATCATCATGATTCTAGACACGACTTGAGCAATCCCCTAGCAAGCAAGCACAGAACCAA
CTCCCAATCAACAAAACGGATGTCATCATGTCATATTACATCCTACAAGCTGCTCCATCC
AGAAGGGTAGACAAGTAGCAGTTCAAGCGGGGACAAAAGTATTGACCAGATTGCAACAGC
AATCCAGTGCAAATGATTCTAGACGATAAGCAACACATATTAGGCATCTTCCCCGACACT
AATCATCATCAAATCTCAAAATTCTCGCACGACCACAAGCATGGCCTCGCCTTTACTCGC
ATCCTAGATTCCAACCAATTTATTATCACTGGCACGGGGTAACACATGGCAACACGAGCG
CAGATAAGCAATGGTTCAAAATCTAATGAAACCCTAGGGAAGAGTGTCACGGTGGGGAGG
AACGGACCTTCTCCTCTTCTGGCTCGTCGTCGTCGTCGTCGAGGAGGTCGAAGGGGTTCC
TGGCGGCGACGCGGGTAGGGGAGGCCGCCTCCTCGTCGTCTTCCTCCTCCTCCACCACCA
CCACGAGGCCTTCCTCGGCGGCGGTGTCCTGCGGGGAGGCCTCCCTCTCCTGGAGGACCC
GCCGGACCAGCCTGCCCGACATGTCGACGGCTGCGGCGGGAGGGGCTAGGGTTTGGGCTC
GGCGGCGGGCCGGGCCGGGCCGGGCGGCGGGGTCGGTCGGTCGGTCGCCAAGCGAAAAGG
CGAGAGAGGGGATTCGAGATGGCGACGAGGTCACGAGGACGACGAGTGTTTTGCTGCCCT
TTCCAGGGTTCGGGAGAAGGCAGATTTGCGATTTCGGAAGACGGGAGGGGCGCTTCTGGA
TAGAGTTTTGTTTGCGTTGTTGCGTACGTGCTCTTCTTTTTTCTTTTCTCCCGACTGAAT
TGTAATTCTTGTGATCCTACCAGTCGCTTCCGTCGGCTGCATTTGGATGGAAGGAAAAAA
CCCTCTCATGCCTTTAGCTTAGTTAATTGTTTTTCTAGAAAATGACCTAATATTAAATAA
TACATATAAATGATTTGAATAAACATTAGTAGAAACCCTTGATTTTGTGAACATGTTTTT
TATCATATAAAAAATATGTCCGTGCATTGCAACGAAGAGAAAAAAAAAATCTTGCAACAT
AACAATTCTAGCACCAGGTTGCACAATTATGCTTGTGTGTACCAAGGGGAAACATAAATA
TTTATTTACCTTCAAAAACTGAAAAATTCAAATGTTTAAACATTTTATTAAGTTGGAACA
TTATTTAAAATTACATTTTGTAACACGTGTTTTTTTTTAAATAAATTCTCTAGGCGCTGG
CCCAAAACATACACATATATGGACTGCACACTTTATTTTGGGATCTAAAACATGGTTGCA
TGCTTATGCCTATGAGCATCGTACATGGGCCTATATGTCGCTGCATGTCGAATACCAATG
ATTCAGGATAATAATTATGTTGATTAAGATTTGACACGGGCCTACATAAGCAACGGGTAG
TAAAGATTTCTAATGTATTGATTTACATCGTATCCTACTAGCAAAAGGACCCATGCGTTG
CAACGGGAGAAANNNNNNNCACACGGCACACGCTCTTAATTTATAAAA