morexGenes - Barley RNA-seq Database

Contig contig_135063
Source Contig contig_135063
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_135063 (7979 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_135063

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_4372	4	2574 bp	AK357315	Available	Available	None
MLOC_4373	5	3998 bp	MLOC_4373.1	Available	Available	LOC_Os01g33420.1, FRAME:-3, EVALUE:0.0, 13101.m03369 protein glycosyl hydrolase family protein 27, putative, expressed
CDS Structure of MLOC_4372

CDS Structure of MLOC_4373

Contig Sequence (7979 bp)

>contig_135063 7979 assembly3_WGSMorex_rbca.fasta
ACCGGCTGGTGTCCGTGCTGGACCGCCACGTCAAGGTGGTCCGCACCGAGCACTGCTTCC
TCCTCTTCGAGGAGCTCGGCCGCCGCGACGGCTGGGTCCAGTGCCTCGAGGTGAGCCAGT
GGTCTGCTTCACTTGACTTCGATATCACACCTTAATTAGGATCTCTGCAGACTAGAATTC
GAGAAAAAGAAAATTTAACAATCGGAATTCTAGATATGAGCTAAATCCAGTGTCTTGCTT
AATTTAACATAAGGTACCTTGATTTAGGAGTGCTCTGAAATTCAAGATATGATTTCAGTT
ATCCTTGTGGGCTAAACATTTCATGATTTCTGAGGCTGATGTTTGTTGTAGAAAATTATG
CTCATTCTGTCTAATGCTTCGTGCTCTGCTAGATTTTCAGGTGGATGCAGAAGCAGCGGT
GGTACGTCGCTGACAACGGCATCTATTCCAAGCTGATATCTGTGATGGGAAGGAAGGGGC
AGATACGGATGGCCATGTGGCTCTTCTCCCAGATGCGCAACAGCGGGTGCAAGCCGGACA
CTTCGGTATACAATTCCCTCATCGGTGCGCACCTGCATTCACGGGACAAGAGTAAGGCTT
TGGTGAAAGCTCTCGGCTATTTTGACAAGATGAAGGGCATGGAGAGATGCCAGCCTAATA
TCGTGACGTACAACATCCTCTTGAGGGCGTGTGCTCGGGCTAGTGACACGAAGCAGGTGG
ACATCCTTTTCAAGGATCTCGATGAAAGCATAGTCTCTCCAGATATCTACACATATAATG
GAGTGATCGACGGGTATGGGAAGAATGGCATGATTACAGAGATGGAGTCTGTATTGGTGC
GGATGAAAAGCAAGCAGTGCCGCCCAGATGTGATCACATTCAACATACTCATAGATTCGT
ATGGGCGAAAGCAGACATTCGACAAGATGGAGCAGGTGTTCAAGAGTTTATTGCGATCCA
AGGAGAGGCCTACCCACCCGACTTTTAATTCCATGATTACAAACTATGGGAAAGCAAGGC
TTAGAGAGAAAGCTGAGTCTGTAATTGAGAAGATGCAAGAATTGGGATTCAAACCGAATT
ATGTGACGCAAGAGTGTCTCATCAATATGTACGCATATTGTGATTGCGTCTCAAAGGCCC
AGCAGATATTTGATGAGCTTGTAAGCTCACAAAGTACTGTTCCCCTATCTTCGTTGAACG
CAATGCTTGATGCCTACTGCATGAACCGCTTGCCTATGGAAGCAGATCGGCTGTTGGATA
CTGCGATTGAGAAAGGTGTAGTGCCCAGTGCTTCCACATATAAGTTGCTTTACAGGGCAT
ACACCAGGGCGAACGATAAGATGCTTGTCCAGAAGCTGCTCCAGCGGATGAATAAGCAAG
GTATTGTTCCAAATAAGAAGTTCTTCCTTGATGCTCTGGAAGCATTTGGCACCTCCGCCA
ATAAATCCAGGAGAGTACAAACCTCAAACTCTGCAAGAGGGTCAAGTAGAGATTCTGCAA
ACAATTCGGAAATGGCTAGTTCAGGCAAGCCAGTGTTAAGTACTTTGGAAGCAGTTAGCG
CTTCCGAGAAAAAAATCAGGATATTACCCAATTCAAACTCTGCAAGCAAGCCAGATACAG
GTTCTGAAAGCAGTTCAGAAATAGCTACATCGAGCAAGCCAGAGCTAAGCTTTTCGCGAG
TAGCTTCTTGATAGGGTGCTCTGTTCTGAACTGCTTCACAGCAGAATGTGTCCAGTTGCT
TACCAAGTTATCCTAGGAAAAGGCATGTGATTGGTTGCTTGAATTTCGAACCATCCTAGA
TGTCAGGTTAAAATTTTAGGAATATTTTCTCATGTACATTCATCAAAAACAACCGAACCA
CAGGATGGAGCCATCTCGAAAAACCCGTTCAACTTCAAGATACCCTTCTTCTGTATGTCG
ATTGGCCTTCTAAATTTCATAGTTGTGTTATAAAATCACAGTAGCATTTTTGTTTCACCA
ATGGCCTTGCTATACCTTTTGTTACTAGTGATAGTCTTGGCTGTGTTTCAGAGGGGTGCC
ACATGTTTAACAGTTTGTTATGGACTAGATCAGTATTTGGAAGAAACCCTCATCCCTCAC
ATCTCAGAATTTGACATTCTGAAGTTTTGGAATTTATATGTCTTGGTGCTTTAGTTAGAT
TTGATACTTTCAGTAGTATACATTTGTCAACACATACACTGCACACACACATTGCTAGTA
TTGATTAAAATGCTTACTTTATTAGAAGTATGTTGTACAAAGGATTGCCAACAACTAGAT
AAATTACACCCAAACGTCCTATGCTTCCAAGTTCCAAGATGAACTGCCAACATTAGGGAG
ACTTCAACACTGGATTTCAAACAACATGGAGCCATGTGAGCTCACCACCGCTGAGATGTC
CCCCTTCATGAGACTCCGGCTCTTTCCACTCAAGACTTCAGTGCAGGTGCACAGGTGTTT
CCTTGCCAACTTTCTCCCTGCAACCTTCTCTAGATCCGGCACCCTTACAGCGATCTTCCT
GCTCGCAGTGTCAAGGTTGAAGAAGGCCACGTAGATCTCTCCTGCTCCATGGAAGACGAA
GAATCAGCACAAAGAAAAGGGATGCTTATTCGCCATGTGTGCATTGGCAAAGAAGCATGC
TGCTTAGGTAAAATTACCTTTGTCTCCAGTTGCTGTCCATGCTCGTGCTCCAGTAGTTTC
ACTCTCTGTTGCATCAAACAAGAGTCCTACTTAGGTAAAAATAGCAATTAATTTGCGGTG
ACTCTATGGAGTAACTTATACCTCCTTCCTTGCTGGAGTGCACTGTAGCACACAATCCTG
AGTAGCTGCTTACAAGGTGTCCATTCTCCGTTAGCTCCCAGACCTGCAGTTCTCGGTTTT
TATTGGCAAAATATGAGCAATCGCGGCATAAATTCACTACCAAAGTTAATGAATAACAGC
CCATTTTCTGGCTGTTGTGCCAGGTGGTAAATAGCTAAGCGAATCAAGCAACTTCATGAT
AAAGCTCCAAGAAACACTGGAAATCAGCCTCAGCCTATATGGATCCCGTTTCTTTTACTA
GGATACCAATGTGTGTGCTTCATTTACCTGCTTCGAATGCCGTTCGCAGGTCGAGAACAT
GGGAGTCCGACTCGCTGAGCTTGTTCGCCATGGACTGGCAGATGCATCCAAGCAACCATC
ATCGGTGTCCATACCCGCCAGATGAAACTTCGCTTGGTCTTCCTCATTCCTCATGGTGAC
TCCATCCCTGGATAACATTAATATGTGTGGATCATACGTACAAGTGAAAATTTGAGTACT
GCTTCCTTTCATGAATTGTTTCGTCGCATGGCACTTACACAGTTTGACGAAGTTTTGCTT
TAGATATGCAAAATGAGGCATTGCGATTCTGGATTCCATAGCTTCTGCAAATTTGATCAT
TTGAGGAACTGTACCATCCGCTGGCTCTCTTGTCGCTGCAGGTACTGAGACCAAGAACAG
TCCCACCATTGTTTGCCAGGTCCGAGCGTCCAGATTGTTCATTGGGTTCTGAAGTCCTTT
CGCTGTGAATATCACCAAACTGTAAATACATACACAAGTTAGCTCGCCATGTTCAATATA
TGCTGCAGCAGGAATCTCCAGGCTCGGATTAAAATTTACTTTACCTCCATGTTGTTTTTA
GTGTGGTGATTGATCTTCAGTAGAGTAGGGTGGGTGATCAGATTGAATGTTTCATCGTCG
AGATGCCTCAAGTCCCCTCCATACATGAGGGGAGATTTGACCATCGACCAAAGTACCATC
TGCAAGGTCATGCCAGTTTGCAAGAAATGTGGTAAGACTTTGGGCTGCAGCTTGAGAAAC
AGACAATGAAGTTTCTTCAAGTGCAATGCAAACCTGTGTTAATTGTTCGTCAAATGTAAG
GTTGGTGCTTCTGTGAGGGCCCTGGTTAACACCTGTATGACAGAAAGATCAAGCATTTTC
CAGTGATTGATTAGTCTGAGCCGCGCATTACAACAACAAAACAATGTCACAAAGGTTTAT
ATGGTGCGAATGATCACCTGCATCAGTAAGCCTGCCGAATGGAAGCATGTCCAAGTCAGG
CCAAGACCTTCCTCGCAGTGCGGTGGCGCCGATCTTATTCGCATCGGCGAATGATCTGGA
TATCATCATATATATGCAGGCGAAGAAGTTACAATAAGCTCACTGATTTTTTACTAGAGA
TTACAAGTAACAGCTACCAGATGCATATCATCATATCTACTCCCTCCGTTCTTAAATANN
NNNNNNNNNNNAGGTTTCACTAATGGACTACATACAGATGTATATAGAGTATATATTAAT
TCATTTTGTTTCGTATGTAGACACCTAATGAAATATNNNNNNNNNNNTATATTTAGGTAC
GGAGGGAGTATGACTTATCTGATGCTTACTGCCTACCTGGCGACGTCGAAATGCGGGCGA
ACATCTTTCCAGTTGTCCCAGTCGTCCCCCGTTATCCTGTACATGTCAACGTGCTGGCTG
ATGTTCTCGGCTAGTGCCGGAGTGGCTTCTGTTCCGGGGGAGATGGACAGGATGACCGGC
CGCTCGAGCTCTTTCAGGGTCTGCAGTTAACGAAACACAATGTGTTCATACGCATGGACT
GATTTCAACAGGCCACCACTCACCACCGATTGTGATCCCAGAATGGGTGTAGCGGCTACA
TTGCATGCGTACCTCTGAGACAGCCACGATCTCCTTGGGGCTGTAGTCCGTGCCGAAGAT
GCAATCTACCTTCACTGCAAACGGCAACAGTTTGGTGCATCATGTTAGCAACAGTTTCTT
CCTGAAATTCAGAATAATGTAGTAACTGGAAAATGCTATGGAGTTTTGGAGCTGGACCCG
GAGTTGGCATGCAGCTTACCGAAATCGACGCCCCAATCGGCGTATTGCTGGTAAAGAGAC
CTCAGGAAGGCTCGTCCGGCCCCCACGTCGGTGTTCACGCTCATGAACCCGTTGGACATC
CACGCGCAGGTCCTGTGGGTGATGCCTATGTCGCGCGCCGTCCATTGCCGGCCGTCCTCC
ACGTATGCTTTTCCCTGAGTAAAATCATGTTCTCTCTTATGTTGTCTACTGGGTCCTCAA
ATATGCGCTAGCTCTCTGGGAGGAGATTCACAACAGGATTTTTCTTTTCTTACGGCCTAA
GCGTATTAACTGCCAAGTAAGTGGATTTTGACGATGAAAACGGAGATCGGTTATTATTCC
ATTCTAAAAACGAAAAGAAAAGAGAAAAAAGGTCCAAGATTGAGGAGAGTAGTATACGGT
GTGGACGTCGAGGACGGGGGTGCTGGCGTTGACGGCCTGGGTGCTGATCCCGTTCATGAG
GTGGATGCCGAACTTGAGGCCCATGGCGTGGACCCTGTCGGCGATGTGCTTGAACCCCTT
GCCGCCGGCGGAGGACGGGAACCTCTCGGGGTCCGGGAACGGGCGGCCCCACTGGTCGAC
GCTGTCGAAGCCGTACGAGTCCTTCCCCGACCCGTTGACGTTCTTCCGGTACCACAGGAA
GTCGATCACCGCGTACTGCACGCATGCATATACACATATATATAGAGTGAGAGAGTGTGA
GGGGAACGCATGATGATCCAAACCATGAGCTATACGTATATGAACCAACCGACCTGGTAT
CCGTGCGGGAGCAGCTTGTCGGCCATGATCTGCGCGTTGTGGAGGAAGGCGGCCTCATCG
ATGGTCCAGGAGAAGGAGTCGTACGAGTTCCACCCCCTCGGCGGCAGCATGGTGAGCTGC
TGCCGGCGGCCGTCTCCGGCCGCATCGCAAGAGCCCCTGAAAGCATGTAACATGATCGCA
ATCAAGAATGGATACAGATTCAGATAAGAAAAATGTTTGAGACAGACAGATGATTAGCTG
CTGCGTTGCAACATCATGCGTCGAGGGGGAGGACGGACCAGGTAAGAAGGGACGCGAGGA
GGACGATGACGCAGAGGACGCGAGGAGAGGCTCCCATGGCCATGGAGATGATCGAGGTGT
TGGTGGTGGGTGTGGCTGACGAGGGAGGGTTGGGAGCTCAATATATAGGCGGGCGGGGGC
GATTGGAGTGGGACTGTGGACTGTGGAGTGTGGAGTGGAGATCGGGTCACACCTACGCAC
GTGTGGAGATCGGGTCACACCTTGCACGGGATAAGAAGCAAGAACCCGGTGTGCGCGCTC
GTTTCGGCTGGATAGGGGATACGGCCGGTGGCATGGTGGTCCTGGGTTGGTTGGGTGTAC
CGTGTACCCTAGCGTTGCGCTGTCGAAACTCCATGGTTTCCGTTCTCCCTGGTTATCTGG
ATTTTATCCATGCGATCATCCAGCCGCGGGCCACATGTAGATTGTAGAGTCCATGTGTCA
GTCGCGGGAGGCCCGGAAGCACATCAGCGCACCTGCCGGAGGGGTCCCCATGAGTCGGTG
CCGTTCCCGGCGGGCGAGCTGGACAACCACATCATGTAATCATGCGGTGGCGGCGACGGC
CCAAGTTGTGACAACGCCGGCGCTCGGTCAGCGCTTCTCCAACAACAGCCTAAAAAGCGC
TCTGCGTGCCAAACTATTCGTTTTTTGTGCGTCGGACAACTACAACATGCTGTAAAATTG
TTGAAGAAATTTGGCACGCACGAAAAAACGCTATCATGCAACATATTTGGGGTGTGGGCT
TTTGCGCGCTTCAAAATTTACACTAACGCGAAACTTTTATGCAACTGTTGGAGATGCTCT
GAGATACGATGCTAGGGACCGGTTGGGTCTCCACGCATCTTGGGCTCAATGGAGGGCTGC
GAGGTAGGCCCATTTGATGGAGGAGCATCGCCATACAAATATACTACTCCCTCCATTGTC
TCAAAAAAAGAACTCTCCCTCCCTTCCTAAATATTAGTTTTTGAAAGATTTCACTAACGG
AATACATACAAATGTATATAGACACACTCTAGAGTATAGATTCACTCATTTTACTTCATA
TGTAGTTCCTAACGAAATCTCTAAAAAATATATATTTAGGAATGGAGGGAGTATATCACT
AAACTCCCTAGGAGTTATCTAATTCTCAACAATATCACCAAGTCGTCGTCCCCTCATGTT
AGGGTTTCTCCTTCCTCTCGGCGACTTTCAGCCGTCGTAGAGATCCACCCGTCCCCTCGC
CAGCCCCCGCCTAGGTTCGTCGTCGGACTATTTCTGGTGACGCCTGGGGTGAGTCCTAGG
CCTGTTAGGGTTTATCCACCCGGTGATCTGCTGTTTCGTCAGGCTAGGGTTTCTAGCGAT
GTCGAACTCAACCTCTGGTTCGGGATCAGGTGTGAAGTATGTTGATGAGATGATGCAGAA
TCTACGCATCACGGAGGATGATGTCGATGATGTGATTTTTGAAGAGGAACAGACTGTGCG
GCCATCTACAAGGTGGATGGCCATAGCTAGGGTTCATACCCCGAAAAGCTACAACAAGTA
CTGGTTTTTTCACAACATGAGAGTTGCATGGGATTAGGCACAAGAGGTAGCAATCTGTCC
GCTCGAGGAAAACCTATACACACTCCAGTTTTCTTGCCTGGGAGATTGGGAGCGCGTCAT
GGATGAAGGTCCATGGACTTTCAAGGGGAGTGCGGTGGTGCTAGCTGAGTATGATGGGTT
TACAAAGCCATCCAAGATCAATCTGGACATGATGGTTATCTAGATCCAAATTCATGACCT
ACCTGACGGCTATTACCCCATGATCAAATCTCTTGCTGGTAAGGTGGGTGAGTACATCTA
TGCTGATCCGAGGTCACATGATTTTGAAGGCAACTTCTACCGTGTAAGGGTGAAAATCAA
CGTCTAGAAGCCCCTAAAGAATGCAATCTCGGTGGTAAAAGCCAAGGAAAGACAATGGTT
TATCCTCAAATATGAACGACTTCCCGATTGGTGCGCGGTATGTGGACATCTTGGTCACCA
TTTTAAAGAGAACTTCGATGGCGTTCACGCCCCCAGTGTAATGCCCCAAGTGTAGACTT