morexGenes - Barley RNA-seq Database

Contig contig_134910
Source Contig contig_134910
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_134910 (7184 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_134910

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_4257	1	1513 bp	MLOC_4257.1	Available	Available	LOC_Os05g51450.1, FRAME:-2, EVALUE:0.0, 13105.m05548 protein OsClp8 - Putative Clp protease homologue, expressed
MLOC_4344	7	10727 bp	MLOC_4344.2	Available	Available	LOC_Os11g27430.1, FRAME:-2, EVALUE:0.0, 13111.m02628 protein NB-ARC domain containing protein
CDS Structure of MLOC_4257

CDS Structure of MLOC_4344

Contig Sequence (7184 bp)

>contig_134910 7184 assembly3_WGSMorex_rbca.fasta
CGGGCAGGGGGCGGAGGAGGAGGATTCCGGCGCCGGCGAGGGATTGGGGATCGGCGTTGG
GTTGGGAGAGGAAGGAGAGTGGATGTGCGACGGAATATGCGCCGAGATGGGCGATGTTAG
CTGGGCCTGGGCCTGGGCCACACACATCAAAACGCGGCCCGCTTCTGCTCAATCTACCCG
GACTGTATTCCCTCCTCAAAAAACCCCTAAGAAAATATTCCCTCCTCAAAATATCTCAAA
AAGAAATATCCCTCCTAAAAAAAAGAGCCGATATGTCTTTTTCCCGCCTTCGATGACTGA
CCCATGGAGCTATGTGAATCTACCAACGTACCCCACTTGAAATCGGATGTTTGATCGGCG
TCGTTGCCTTTAGGTAGTTGTTGTCATGGAGCTCCGAAACTTCACTTGAACCGGATGTCT
ATGCGACAAGAGACTGTTGTGCAAGTCCATGGAATGTTGACTCCACGATTGGATCTTCTT
TATGTTTATTTTTAACACCGGTGCTCTAATTTAGAGTCTACAAAAATTTTCGGGCTAGTG
AAATAATTTCCTACCCATATACATTTTTCTTGTTGCCCATTGTGACATTTTATGTTATAA
AAATGTGAAAAAGCAAACAACGAATACATAGTTATTTTCAACATGTGTGAGCATTTTGCT
AATATAGGTGGGTTTTTTAATGAAGAGTGTGTGATTCTGAAAGAACATTTTATTACAACT
TTCGTTTTTGAACTACAAAACATTATTAATGTAGATGATCGCCACTGCCATTGCCACAAG
CTCTTCTCCAGGAAGTAAAAAATACATACACAATTTGTGGATAAATGTACTCATTTAATA
AATAAATAAAATAGAACTATTGCGTAACCAAAGTATATTTTTTTCTAAAATAATAATTGA
ACATTTTACCGGCTAAAAAATTATTGTACAGTATACAGTAGTATTTGTGTAAATAAAAAA
ATGTGCACGCTGACACAAGAAACTTCAAGTCTATTATCACATCTGCTACAAACCAAAGTT
GGCAAAAAAAAATTGGGTTTCCAACGGTGAAATATGCCAGAGAATACAATATCCACGACA
AGATAGTGGCAAACATACAGCTGCTGCACATTCTAAGTCCACAACCATCAGGCCCGCTCG
GGCGCAGGACAGTCGCATGAGTGCATCATCGCGTTCTAGTCTATCTGGGCGCCGGAGTCG
ACCATCGCCCAGCTCCAGCCGGTGCGCGCTTCCCAGACTGCCGCATCTCCTGCGCCTTCG
CCAGCTGCGAGGTCAGGTCCTGATCCACGACGAACCAATCGGTCAGCACAAAGCACCCGC
GGCATACAGAAATCATAAACCAGACATGGATCGACAAGGGTCTAAAAGGTGGCACCTTTT
GCTTGAACGAGCCGTCCAGCGAGTGCAGGATTGTGTCGGCGAGTCCGTAGTCGATGGCCT
CCTGTGCACGGAAGTACCTTGGGCCTCTCAGGAATTCTGCGAGCTCTTCCTTAGGTTTAC
CGACTCCCTTGGACACGAGCTCCAGGTAGTAGTCTGTGTTTGTCTCCAGCTCTTTTGCCT
TGAGGACAAAATAAATATTCAGTGCATGGTGCAACACGGCAGTACCATGTCGCGGGTCAG
ATGTACTCATATCCGAAAGGAGAGTCGAGTTTCACCTTAATCCACATATCAATGGCAGCC
CCACCAGATTTGTGGACCTTGGGCAGGTGCAGTTTAGCTGCAGTTCAGAAATGAGCATCA
AGATATATTTAAGACTACCGTGTCAGAGTCAAATATGCATGTGGCCCAGGAATCCGAGAA
AAGGGACATACTTATCGAATTTGGTAGCACTCCTCTTTTACCCTTCATCCCCAGGGAAAG
AAGCATTGCAGCCTGACCATACGCCATGCTAAGATTGATGGTGTAAACCTTAGCTTTGCT
TCGCTGTAGAACCAAGAAAAATACGGCAGGAGAGTCAGACAGAACTCTTTTGTGTATGTA
AGAAAATCAACGTGGATAGTCCTATCGCTTCAAAGGGAATGGGATGCTTGGTTCCACTTG
ATTTATCAGAGTATGTTAAGATGTAACTGCACAGACTGAGGGATACAAGCCTCCATCTTC
TGCAGATCCATGGTTCACTAAACACTAATGAAGTGAATTCAAGAGCCTTTACAACCAAAG
GTGGAAGCAAAAAAAAAAAAAAAAAAAGGAAATTCCCAGTGCTGAAACCCTTTTTGTGCA
TATATAAAGATCAACCCTGGTAGTCGTATTGCTTCAATGGAAATGGAATCCTTCATCCCG
TGTGATTTATCAATGGAGTATGCTAAGGTGTTACTGCACAGTCTGAGAGGTAAAAGCAAC
CAACTGCTATAGCTCCAGTTTCATGGTTCACTAAACACAAGTGAATTCAAGAGTCCTTAC
AATGAAATGTGCAAGCAAAAGCTAGAAGAAACAAAGTAAGAGCCAGCATCTCTGATAGCA
GACACAACTCCAGCAAATTGAACCTTGCTTCAATTTTCGGTAAATGTGAAGGAACACAAT
CAAATATGCAGAATATTCAAACCGCTATAAACTAAAAACCCCAAGGGCTGAATAGATTGG
CATGCTGCAACGACATGCAAATTTGTGCAAAAACTTCTGGACAATCATGATACTGAAAAT
TTGCAACATAAGGACAATAATTACTTGCCCAGTCCAAAAATATAAATATATGCCCTGGGA
CTATAACAAAAACAGAGGATCATCAATGCAAACATAGTTCATGGATCCAACACCATATGC
AAATATCGACAGGAGTTATGACGAATTATGTGTAACATTATGGGCACGATATAAACGTAT
ATCAAGTTTCCAGTTAATCTGAGTAACAAAAGAAAAGGGCTTACATTAATGAAATCAGCA
ATTGCATAGGCATCAGTTTCAGATGCGACCAGCTCATTATTTTCATCCTATTGCAGCACA
GAGAATAGGAAAATCAATACTCGAATAATGTCAAAGAGAATGGAAAAATTGGATGTTAAC
AATTTAGAAGAAATGTTGTTTCCGATATCGATATCTAAGTACTTACGTACCATTGTTCCT
GTGGAGTTTATATACAAGTAAATTGGCTTCGTGCGGTCATCATAGTCTAGCCACAGAAAC
TGAGCAGCAATAAGCTCAGTCACAGCTGGAACAATCTAGCAACAGGACAAGGAAAACACA
AGGTTACCATTTTGCTAGTTGAAACCTTATAAATTCAGTGTTGCGCATAAGGAATAAGAC
ATAAGGTTGATCTCTTACTGGCATTCCAAGAAATATAATTCGGGAGTCCAACAGCAATGA
TGGCAGATCTGGGGCTGAGCTTCTCATTCTTCTATATCCTTTTCCTGCTCTACCCATGCT
CATGCTGGGCATGCCCATGCCCATGTTGTAACTTGTAGGGCCCTCATGCGTGCCTGATAA
GGAGTACATACCAAATTCATCATAACTCCTCAAAGCAGAAATGCTTTCCTGCATTTATAG
GGGGGGAATACCATGTCAGGTTTAATGTATTATTGTCATAGAACAAACTTCAATAATAAA
AAATGAGCAGAGCTATATAATCTCACCAACCTCTGTAACTTTCTGTGACAGCCGATTATA
AGGGTTGTTGTCGGTCATAAACATTTCCATCTGAGATGGGCTTAAGCCATAAAGGAACTG
AGGAACATTCTTGTAATTATCCATCACTACAAGGAGGTTGAAGAAAAGCCTTAAAGCCAC
ACACAAAATAACTGGTACAGAAAGCGTTAGGGATAAGGTACAATTGCTTAGCTCCTCAAC
ATAAAAAGCTAGCAACTGCTACGGTTTGTAAGCATGCATAGATGTGTCATATGAGGACAT
TTTACATCAAGTGTTTGATGAGACAAGTCCACCTATGAAGATAAAACATGGATATAGCAT
GTCTGGTACTTATGCATAGTCAACATGCAAACGTCTACCATTTCTCCTCTGCGGTTGTCT
TTTAAAAAATGTCTACTGCTTGTTAACAACCACCAGGCAGTAAAATTGCCCTATGGATAT
ATTTTCCTACCATTTGGTAAGATAGCGTCAAGATAATATATTGTGCAGTAGTAAACTTCT
GAACTCTCACAAACATTTCGACCTATAGACCATCCATAGCGCACTGCCCCTGCTCAATAG
CCTCAATTCCTAGTCATAGTCGAGTTAGTTGTGTTCAACATGCTAAGGGATGTGTGGGCA
ATGCCATTATCTACATTCTATACCGTCCATTGCTCTACAGAAGGCCTATGTAGTTCACAG
CAGCTAGGAGAAGTATCTCATCATGGACGCCCCTGTACGAAAAGGTTTATTTGACTCTAT
TGTGAATTTTCATGCATACATGGTTTTGTACAGTTGTACCGACCGCTTCGTGTCCATGTG
TGGGCGTTGAAATTGGGCAGTGAAATGCAGCAGTGAATTGACTGAATCTACGAACCAGTA
GCTTAACTTGAAACAACCATAATCTGTACAGATAATATTATTTTTCTGTTCCATGGTTGC
ATACCATTGGAGGTCTGAATCTGATCATGATGAGTTCCAGAAGAACTTAAGACGGACAGC
GCATAGTTTATTCACAAAACTAAATACTACCGCTAGAGTATATTTCAGCAGCTGACAGCA
ATGAGATGCTGCTTGAAGGTTGACGCCATGGCATGATGCATAGTTAAATACAGTAGTAAA
CTATATGAATCTATGACCCAGTAACTTAACTTCAAACAATCATAATCTGTGCAGATAATA
TTTTTGATCTGTTTCATGGCTGCATACCAGTGAAGGTCTAATTAGGATTGCTCTATCACA
AATGCAACCGAGGAGCAATTCTTAAGACAAAAGGCATGTAGTTTATCCAGACAATCACAT
ACTACTCCTAGATAAAATTAGAGCAGCTGATAGAAATGGCTGATGTTGCTTGGTGACGGG
TAGGAAGTCTAGTAAACTAGCTGAATCTACAACCCAGAAACTTAACTTGAAACAATCATA
GTTTGTACAGATATATTTTTGTTCTGTTCTCATGGTTGCATACCTAGAGATATATTTTTG
GTCTGTTCTCATGGTTGCATACCAGTGGGCGGTGGAGGTCTGATTGTGGAAAGATAGCAG
TGGAGATGTGATTATGATGAGTTGTAGCAGAAATGCAACCGAGGAACGCTTTTAAGACGA
AAAGCATATCACTTATTTACTCAACGTAATACTGTACTTTAACAGACAGGAACGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTTGAAGTTGAAGGATAAGTCCAGTAGACGATGATGAGC
TAGCTAGCGAGATGTTGTACTGAATGTTTGAGAAGGATGGGGAGGGAGCTCACGGCCATC
CTTGAGGTTCTCCTCGCGGAACTGCTTGGGGATGTGGTCGAAACTCCTTGGCGGGCCGTC
GCCGTGGTTGTACTGGCACCTGCAGCCTCCCACCGGTCTCCTCGGGAGCCTCGCCGCCGA
CTGGGGGTGGTAGTGGGAGGAGGAGTTGGGGAAGGGGGCCCTGGCCGGCGAGGCGGCGGC
GGGGCAGCGCAGCGCGAGCGCCATGGCTGATGGGGAGGGAGGTTCGGATAACTGGAGTGG
GTGTGGTAATTTGGTGGGGTGGGGTGGGGTGTGTGACTTCCTATCTGCCGCTCTCCGCGG
CAGATTGGCGGCGGGGGAACTGCACGGGCGACCACCCGACTGGACCGGCCCACTAGCCCA
CGCAGCGAAATAGAAAGAAAACCCAACATTTATTTACTCAAAAAAAAGGAAGAAAACCGG
ACCAAGTATGTACTGTAAGCTAATCCTATAGCGACTTCTTCTAAAACAATAATACTGTAG
GACCGCTTTTTTTTAATAGATGGGAATAGTTTTTTCAATGCGTGTAAATTTTATGAAATT
TCTAATATTATTAAATTTTCTTTTTTTTGAAAAAACAATAAACGAATATGGAATTCCAAA
CTTTTTTTTAAAACTTCAACCACTTTTCAAATTTGTCGAAAAATATTCTGAAATTGCGAA
TAGTTTTCGACAAGGCGAATATTTTTCAATTTTATAAATATCTTTGAAAAGCATGAACAT
TATTTCAAATTTGCGAACATTCTATCAACTTTCTGAATGGGCTGACCCATCTTACATTTG
CTAGTTGTCATCCTGTACGTTTTACCGATTACTTGACGCAGAGCGTTCCGAACAGGAAAT
TCCGCTAACTGTTGAGAGCATTGCGCGTAGCACCCATGATGTTTTGATGATTAACAGACA
ATCCCTCGGGTCAAGCTACGGGATATGTATGGGCCGGCCCAAAGCCAGGGACGTTCCTGC
ACAATATGCAATTTGCGCAAGAAAAAATGTTGCAATTTTCAAAAATTACCCACCGGTTTT
ATTTTTCAAGGGGGTTTGCCTAGTGGACATCATCATTTCCCGCTTCACCAAAGACATCTC
GATCCATGTTCGATTTCACTAAAGAGTATACTCGTGTAGTCTTGACTAACCTCAAAGGTT
TCGAATGGCCGCATGTAACGTCCACTACAAGGGACGAGAGTCTTAGACCTTTGAGTATCC
TATGGTTATGGTCTAGGTACATACCTCATAGAAGTAAGGTCACAGAATCACTATAAAAAC
ATCCCAATGGTCGAAGGAGAAAACCATCATGATAATACAAAGAAATCCGTGAGATCAAGA
CATGGCCAGGTCCGTGGCATCATCCGCGGGAGAAAAAAATGACGTGTGGGGTTGTTATCC
CACATCATGTCATCATCTCCACTATGCTACAAGTACATGCCGTGCAAATATACAGGTAGG
GCTGCAAGAAAAGTTTGAAGCTGGTGAGTAACTCTGAGATCGTGTCAATTCTTGGCTCGG
CTCAGAAAGAAATGAGTTGAGTATGAGCATTTCATGTAGCTCGATTAAGAAATGACATGA
TCTTAAGCTAGCACTGGCTCACTTACATTTATGCTTTTTCACTTCTCGGGGAGTATAGTT
GTGCTTCACGTGGAAGCACAATTATGCTTTTTTACTTTTCGTGGAGCACATATATGCTTC
ACCTGAAAGCATAGTTGTGTTTCACCACGAACCATGATTGAGCGTCACATGAAAGCATCG
ATGTGCTTTTCACTTTTTCGTCAAGCACAACTATAAAAAACCTACTTAGATGTACTCCCT
CTGTTTCTTTTCAGTCTGCATATAAAGTTTGGTCAAAGTCAAGC