morexGenes - Barley RNA-seq Database

Contig contig_134600

Source Contig contig_134600

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_134600 (3981 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_134600

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_4037	2	712 bp	MLOC_4037.1	Available	Available	LOC_Os06g40510.1, FRAME:-2, EVALUE:3e-52, 13106.m04213 protein CRAL/TRIO domain containing protein
MLOC_4036	2	721 bp	MLOC_4036.2	Available	Available	None

CDS Structure of MLOC_4037

CDS Structure of MLOC_4036

Contig Sequence (3981 bp)

>contig_134600 3981 assembly3_WGSMorex_rbca.fasta
TTAGTCTCTTTAGTATTTGGATCCAAGCATGGGCGAGGCTAGCAAGTTTTAGTCCCCTAC
TTTTAGTCATGGGACTAAAACGTATCCAAGCACCCTCGTAGTTTCAAAACACAACATCAT
GTCATCAGTAGTTCAGGACACAAATCTCCCAAACATTTCTGAAGTTCAAAGCTGGACCCT
TTCTCAAATCTGTTGCCTCTGATTGTTCGATATACATATATCCTTTACTAGTGCAACTAG
ACATGTATCTTACATTTTTGAAGGTGAACACATCTTATGTCATACTACATCAGAAACATA
TCTACAATGATAATTCAAGCATATAGTAGTATCAAAAGACAGCCGTATAAATAAGTGCTG
ATGCACAGCATTGAAAGTATGGAACAAATAGCTGCATCAGGTTTAGCTATGCAGAACATT
GCATATTGGGAAACACTTTATGATGAAACAAGTCCTAGAAAAGTGAAAGGATAGGACTCA
ACAATAGAAGGAAATAAAAGATAACTGGCTTAAGACAGCTATACCTCCTTTGAGTATCCC
GATAACCCAACAAGCTGTGATTCTCGTATTGATCTATACAAATCTACTGGGACTATAGGT
TTCTGCAATTGTCCAACACATGCAGATGATCAATAATAAGAAAATGTAAACAGAATATTC
GATTTACCTACGCCTCTAGCAGGGGAAAAATAGGCAAGCGTGCCGTAGAAGAATGGTTGC
TCACCTCCAGTATACTGTCGATTTCATTCTGTATCCTCCAATTCAGACAATCTACAAGCT
AGCAAAAACAAAATATACTTGATCAGTAAAGTAATCCATGGAGCATTTACTTCAGCATTA
ATCAACTAGGGGAAAACGTAAGCCAACAAGACCTTACCATTTTATGAGCATTAGTTACAT
GCCACTCTCTGGCTTTAAGGAAGCGCACCAGTGTCTCTGTTGGATAGCCCTGGTGCACAT
TCTGGAAAGGGAAATTCGTGTAATTGAGAACTCAACTCCCATTAAAAACTACTCTACGGC
CTCTAATGGTAACAATTTATTTGGAAAACTGAAAGAGCTGAAATGCACCAGATATGATTT
ATAGTTCTCCCCGATATGGTTGAATGTAATACTGAGATTATTTTGAAATCTTTAAAGTAT
GATATTCTTACACCAGCTATAGTTCATGGTAGTTTTGCCATGAAGCTAAGAGGTGCAGGT
GGTATTTTCCTTGAAGGCGACGGCTGTGGGTGTTGCTCTGTTTGGCCTTTTTTTGGTTGT
GGTGCGTGCTGGCTGTGTGCATCCTCAACGCTTTGTCATCACGGTGTTGCAGAGGTCAGG
TTTACTTTATTTGTATCAGCTGGATCAATTGATAAAATTGCCCTCTTCGGGAAAAAAAGT
TCATGCTTCCTCCGGTCCTCCTGATATGGTAGTATGTAACACTAAGCTTAATTTGAAATC
CAAAATATTGTATTATTTTCATATTCTTATAAGCACTTGTAGTTATTATTAGTGTTTACA
TATATGCTAGTATCCCAACAATAGCAGGAGCAAAGTAAGTGTTCCTTAAATTAGAAGGAA
AACTTTGCAAACAGAGTAACCAGACATGATCAGATGCTAGTTCAATCATAGAAGACAGGA
TTCCAGATGTAAGTGGCAGGTATATGCTTATCTTGACTTCCTTCATCTTTTTTCCCATGG
AAGAATATTTTGCGTTAAAAGTCAGGTCTTGCTATGGCAGAAGGAATATAGAATCTTAGC
CCTTAAAAGTCGGGTTTTGTTACCAGTGAAAGAATCAATATTCGTTTCCCATACAAGCCC
CATAAATAGACTATGCATTCATGGTACGATGAGCAATTATAGATCTTCCACAAGTATGAA
AATAAACATAACGAATTCACATGCATTGGCTACTTTGAAAAGACAGATATATTCTTTGAG
AGCAGAATTGGTTCGTTTCACCTATAAAAGAAATCGGATACTGTTATTACTTGGTAGTGG
TTCCATGTGCTAGTACTTTGCCTGCCTAATGGAGAATTTCAGCACAACAATCAAGTAGCA
CTGTCCATCTTTGATTCCAGCTCCACTAGATAAGAGATTCTGCTCCGGAGTAAGTTGACA
TCTCGTACTGATCAGCACCCAGGGCGTGCAAAAGCCTTAGTCTCAGGAAGCATTTCAGTA
ACCACAAAGCATAAAAATGGAAGCAACTTTCGAATAGGATGTGTGGCTTCAACCTGAGAC
CAGTGCCGCCATACTAGCAGACTAAAAAGCGCGGAAATGAAATTATGCCGGAGAACTTGG
AGCATCTGCTGGAGGAATCTGTGGTGGCCAGATGGCAAGAAATTTTTAGCGAGGAATACA
TTGTTACCAGCTAAGTGGGAGACCGGATGCCCCCAACAACAGATCAGGAGGCCTCGAGAC
GGAACACCTCACCGTCCACTAGTTAACTCAGTGGAGGTGAGATCAGAACAATTCCATGAG
AGATGAGACACACCCCTCACTTCATTGTCCAACCACTCAAAATTACCCCCCGGAAAAAAT
CCCAAACGTGTGGCCTACACCAAAGAACAAAATAATACCTTGCATCCACAGGCAAGCAAT
AGCGCGGCGACTTTCCCTACCGAAAATCTACCATATACAAGTTGCCTAGCAGCAGTTCAT
CGATATTCAGTAAACCACCCTTGATCCAGCATATTATCAGCTACATGCTCCGTTCCAAAT
TCCAATCTAAAAGTGGACAGCAGACTTGGAGATTAGATAGCGACTGATATCAACCATTTA
TCGCCAAACAAGTGGCCCTACTTTTCGGCAAGATGAAACTTTGTTTTTTGTTCAATAAGA
AATGTAATGGTACTATGGTGCAGAGGCCGGGGACTATTATCTGAAAAACCCATCTCCCCT
GATTCATTTGAACCAGAATTGGTTTTGCAGACCACTCAGCTGAAGCAAGCAATTAATGGT
CTATAAGACTATAGTCCAACTGAAACAGAAAAGCCGATCCAGACGACGCGCAAGAGGCAG
CACTCCAGAGGCATAGATACAGATACAGAAGCTGGAAGGAACGAACAGAGAGGTCAGAGG
AAGATCCAGCATACCTGGAACGTCTTCTTGAGCGGCTCCTCGACTGCAGAAAAAGCCAGA
ACAAGAGGCGCAAGGCAGTCAGCATTCAGCAGCCAACACATAGCAAAAGTGCAAGACTCG
AAACGTGGAAATGTCAGGAACCGCGGGGGGAGGAGCGAAGGGCCGCTCTTGCGGAATCCG
CGCTCACCTTGGTCGAGGAGGCGGGCGAGCTGCTGGACGGCGTCGTCGCAGGCGGCTCCC
ATTGCGCGCGCTCGCTCGGGGAGGCGGGAGCGGCCGATTCTGCGGGGGGTTTTGGCGCGG
ATTCGGAGGGGCGGGCGGCGAGGGAAAGACGTTCGGGTTCGGGGGGCGGTGGGTGGGGAA
GGCGGTCTCCTCCGAGTCGTTCGAGCAGCTCTTCTCTTGGTCGGTGGGTCGTTTTGTCGT
TGCGGGACGACTTCGGGTTGGAGTCCACTTCAGACGCTGCTTATTATAGGCGTGCAGTCC
GGTGGGGGTGCAGTTTCCTTTTCGTGTTTTCTTTTCTTTTTTTGGCATGCAGTTGGGCAC
GGATTTTTGTCACCTCGCGCGAGTCGGATACACAGACTATTCAGAATACCAGACTTAGTA
TTTTGGTACTGTGTTCAAAAGAAAGTGTTTTTGTACGTCCCTTAAAAAAGGTATTTTGGT
ACGTATATATAGGCCAATGTTTTTTAAGGAACGTTATACACCCTCAACCTCTTTTTAGTC
TACATATAAAATTTGTATGAAGTCAAATTTCAGAATGCTAGACTTAGAGCATCTCTAGTA
GAACCNNNNNNNCCTTAAATGTAAAATCAGTTTTAAGGGTTGAGAATTGCCCATTTTTGA
CATTTTTAAGGGTTGAAAAAACCCAACCCTTATAACGAAATATTCCGTTATAAGGGTTGG
GTTTGAGGGTTCTAGTCTTTG