morexGenes - Barley RNA-seq Database

Contig contig_134530
Source Contig contig_134530
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_134530 (8261 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_134530

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_3981	2	1292 bp	MLOC_3981.2	Available	Available	LOC_Os02g26850.1, FRAME:+2, EVALUE:8e-104, 13102.m02919 protein rRNA-processing protein FCF, putative, expressed
CDS Structure of MLOC_3981

Contig Sequence (8261 bp)

>contig_134530 8261 assembly3_WGSMorex_rbca.fasta
GCGTTTCTTAACGCTTTCCGTTTAGCGATCTACAAGGGTATGTAGATCCGATCTTCCCTC
TCGTAGATGATCATCACCATGATAGGTCCTTCGTGTGTGTAGGAATTTTTTGTTNNCCAT
GCAACGTTCCCCAACAAGTTATTCATGCATTTTCATAGTCTTTCTCGATGTGTTCATACA
TATGGTATTTTTTATTATTTTATACCATGTTCCCCAACAGTGACATCATGAGCGCTTCTA
TAAATAGATGCAAGTATGATCTACATCACATGGTGATGTGTGGGCATTGCACAATTTTAG
TTGTATCATTCTCTGTACAGTGCCGTCATTTTAGCAACGACGCCATCATTTCAGCGCCAT
GTTATTGCGTTGTTCCACAACTTTGTATCGTCTTCCCGCCCACAACCAAGCCCAAGCCTT
TGTTCCTTGGCCCCGGACGCCCGCCGCCCTCAATCGCATTGCACTCCCGTGTTGTGCCAC
AACTTCGCTTCACCCTCCTCTCCATTACCTATTTTAATAACACAATATGCTTTTTAACAT
CAAAACGACACAATTGTTGTTTTACATAACAAACATTGCAAGATAGAAAAATAATAACCT
TGAACACCGATGAGTTGATGTTTGTATAATAATTTTACAAAAGTGTTCATCGCACATTTA
AAAAGTGGTTATGCAGTGTATTTTTTTATAAAATGTTGGTAACATTCAAAAAATGCATGT
CACGTTTAAAGATGTTCATGTATTCCAAAAAAACATACGTGATATTTTGGAAAAATGTTA
TCCAATTTTTTTAAAAGAGTATAATCGAAGTCGCTCACATATACGAGTGTACACTCATCC
CTATGAACGCATGGACGCACACCCTACCCATATGAGCATCTTTGAGAGACTAAGCCGGCA
CATCATCTTNAGATTGACGAAGTCGTCACTGACGCCTTCGTTGTCGATGGGAACCGTCTC
CTCCCACTGAAAGCACATCGCCGGAAGACCTGGAATAAATCCGGAAAAATTGCAAGCACT
GACATCAAGTATGAGACTTAAACTCTGATGGACAGAGGATACCACAGTACTCCTAACCAT
CCAACCACAGATTGGTTTGCTTCAATTAAAAAAGTTAGACCAATTAATACCCATGCAGCA
CAACCTTTTTTTTTCTATTTTTCTGTAATAAGACCCTTGTTGCAAAAAATGCAACATCTC
CACCACACCTAATTTTTTATAACAATGTGCATGTTGCAAAAATAGCAACACATCTTCAAC
CGCTTCGCGCATTGTGAAGTCATCGTTCGCTGCTACCATTCTGCAACAACAATGTTATTG
CAAGAAAAGATGAGGAAGAGAAACGTGCATGGTCAAGCACGACACGTATCAAGTAAGAAA
GGCGACATGCGTCTCACGCTACATCTACCGACCGATTAGAATCATTTCACATGAAGAAAA
CTACATGTAAAAAAATCATTTCACATGAAGAAAACTACATGTAAAAAACTCACGCCACAA
CTACAATAATAAGCTTGCCCCGCACCTTAGTTCCATCTCGCATCCGGCCAGAAATAGCTC
CTGCGGCAATTTGCCCGCTTGAAGTCCTCCGATTTGGAGAGCAATTAATGAAGAAGCCCT
CGGAAGTCTTTTCATGGTCTTGCTGAGAGCGCGTCATTTGGCGCACTCTCAGCGTCCGCC
ATATGTCGTGTTTCGAATGCTTTTATTCATATTTTTTTTATTTTTCCCGTGCCTTTTTGA
TTTTTTAGATGGTTTTTTTACGGTTTTTTTTCATCAGACTTTCTTAACTTTTGGACAAAA
CAAAACTATTTTTTTTCATGAAAACATGTGTTTTCTTTAGTTTTCACAAGATCCACATAT
TTGCTTCCTCGAGAGTTACAGCGTTGGTTCCGCGCTAGGCATGATCGTGTCGTTCGAAAA
CAAAAAAAGTATAATTTTTTTCTTCTACGAGAGGCATGAATTTGGAACATGCCACTCAAA
AACGAAAAAAAAACATATTTTTTTCGGAAGAGACACGGGTTTGCTAGAAAAAAATGTGTT
TTCTTTTTATTTCGTGAGAAGTAGGGATTTTCTTTTGCAAGAGGCACAAATTTGCTTCCG
TGAGAGGTATGACCATGCCTCTCGGAAACAAAAAATGTGTTTTCTTTTTTTCTCCTTCCG
TAAGAGGCACAACCGTGTCTTTCAAAAATAAAAATAAAGAAAGACGAGAGGCACAGGTTT
TGCTTCCGCGAGAGGCATGGTTTTTCTTTCGTGCCTCTTACGAAAAAGAAAAAAAGGCTC
TATGTTCTTTTTTTGTCTGATATTTTATTGAAAAAACTTTGTCAAAACCTATCGACGATC
TACCTTTGAAAATCTCGACGTGAGTTTTTGAGATTTGAACGCATGATTTAAGAGATAAAA
CATTTTAAAAAATAAATCTATGTAAAAATAAAAAAACTACCACGTTGCGATAAATGAGCG
CACCGCTTGTTGCAATTTCGGAGGTGAATGTGATCTTTAAAAATAATACCCTTCAATTAG
TGATTTCGTTATATTTAACAAGGCAGGTAACCTATAGAACGCCAGGTAACCTATGCAAAG
TCAGTTTTTTCTTTTCCATTTGACCGGTTGGCCATTGATCCATTGACGAGTTGACCCATT
GAATTTTGCTCATTGACTTTTTCAAAAAGGTTGAAGGAAATGAAAAAAGTTCATACATTT
GGACCAAGATCACTACTTGGATTTCTTTTTGCAGATATGGAAAAAGTTCACAATTTCAAA
TTTGAAAAATTTATATAAAGTCCATGGTTTTGGATTCGTAAAATTTCATAAATTCAAAAA
TTCCATGCATCTGATTTTTTTACTAATCTGAAAATAAAAAACATGATTTAGAAAAATTAC
GGGTTTGAGATATGGTCATAGATTTGAGAAAGCTCATGAATTTGAGGAAACTTTACAATT
TCTTAAAAAAGAAAAAGAGTTATGATTTAAAAAATATTTTCTTTTTCCATTTTTATTTCT
TTTCTATTTTAGTTTTTTTCATTAATTTTTTTGTCAAAACCTATTAATATTGGGATCTAA
TTTTAAAGATCCCGACGGAAATAAGTTTCGAGAGAAAACATTTTGAAATAATGAATCTAT
GAAAACAAATTCGAAATGCAACAAACAATATACATTCAGTGCGTCACTTGTGAGCACCAT
TAAAAATAGAAGCGACATTTGCAAGAAATACCTCTTTTTTAGTAACTGCAAGAAAGACCT
TTTAGTCAATGATTTGGGCCGAATAGGAAATGCTGCCGCGTGGCGCAAGCGCGCAGCCCA
CTGCCCTTCCCTCTATGTGGGCTTTAAGTATTCAGCCCACGAAGGTGCAAACAAATTCTG
GCTGCACCGGACAAGCGACAGAGCGGGACGAACCCTACCCGGCTGCGCCGCCGCCCATTC
GTGCAGGAGCTGGAGCTGCGCCGCCGCCGCTCTTCCAGGTGCAGGAGGGTCGCCGTCTGC
CTGCCCAGCAAACCCGCCCGTCCGGCGACACCGCGTTCTCGCCTGCCCGCTGGTCCGGCG
ACACCGTCCGCCCGCCCGCTCGTTCTGGAGGGCAGCCGCCGCTCGTCTAGGAGAGCCACC
GTCGCCGACTCACCGCAGACGCCGTCTGCCTGCCCGCGTACGCTCGTCCGCGATGAGGGT
GAAGAGGCGATCGCGGCACCGCAAGGTGGTCAAGTTCTACTCCACCTGCTTTGGCTTCCG
CGAGCCCTACAAGGTGCTCATCGACGGCACCTTCGTGCACCACCTCCTCGTCCACAAACT
CCTCCCCGCCGACGACGCCCTCCGCGAGCTCCTCTCCGCGTCCAGGGCTCCCCCGCTGTT
GACCTCCAAGTGCGTCGTCGCCGAGCTCAGGCGCCTCGGAAAGTCCCACTCCGAGGCGTT
CGACGCCGCCCAACTCGTCGCCACCGCCAGGTTCCTCCTTCTCTTATCTATTTTTCTTTA
TTGCCACTCTAATCTATATATGCACTAGTCGTTGATGCAATTTTAAATATGCATCACTTT
GTTCTGTCATATTGGTTACCCCATAGAGTCAATTTGACAATTGGGGTTTGGGCTATCTGA
ATACTTAGCTGGACCTAGTTGGTTCCCCGTGCGTTGCCACTGATTAATTAATTATATGTA
GAAAACAACATATATTAAAGCAATTCCTTTATCTCTCACCCACTAGTTCGAGAAAACACA
AATATGATCCTTCTTAAGTCTTAACTCACATATATGGCCACGAGGAATGCACAAGCATGG
CCTCGCCATGTTGTTCTTTTCTTCTCTTAATGTCCAAACCAATTATATCCATGTATCAAA
CAACCAACTCCTATACTGGGCATGCTCATGCAAATACATAACACACTCACTAATAGACTA
AATAATTACTCCCTCCATCCCATAATATAAAGAGCATTCTTTACACTACTAGTGTCAAAA
ATGCTCTTATATTATGGGACGGAACTACTGGTGTCAAAAATGCTCTTATATTACGGGACG
GACGGAGTAACTCTTATGAAGAAAATAAAAATACATGGACAGTGGCGCTGTATGCCAAGT
TGAGAATAAGTAGGTGGTGAAACCAATTAACCAATGGAACTTCATTTCCAGCTTTGAAAC
CATGTAACTTGGCACTGGTTTGTTGCTTCTGTGCCCAAATGCAAATCATGTTCTGAAATT
GGATCACATTGGTTCTGTTTTATCACTTTGATTTGTATGAAATACTGCTACTACATTCAG
TCAGGATAGTTTTACCCTTTTATGACTTGATGAGCTCGAGGCGGGAGCGCTGATAGTTTT
TTCTCCGGACTTTTATTTGTGTGTTCAGCTGTGAGCATGACAAAGTGGTCAGTGCGGTGG
ACTGTATTCTGTCACTTGTTGGTGATAAGAATCCGGAGCACTACTTTGTTGCCACCCAGG
ATTCTGGTCTCCGGGCAAAGCTACGGGAGGTATGAAGATTCACTGCACTTCTCTAGGATT
CTGCTTTTATCATTTTATCACCTGAATTTTATTTGTGAAGGAATCTGCTCAGGGACACAA
TACAATGCACAAACATAATAGCATCAACTTGAAAGAAATGACATAGCACTGATAGCAGAA
TTTATATGCCATCATAAAAACTGCTTTTGCCCAATGAGCTCATGTATGTTTGCTTGGATG
TAGCATTCTAGTTTTACCTTATTTTTGTCACCTGAATGTTACTTTTCAAGGAATCTGCTC
AGGGACATGATACAACCTAGAAGTATCATATCATCTACTTTGCAGAAATGATATAGCCGA
ATGTATTAAGCCATCTTAGAAGCTACTTCTGCAGTCAGTTTGCTCATGTATGTTTTGCTT
GGGTGTAGGTTCCATGTGTTCCTGTGATATATGGTCTGAAGAACTCCCTGTTTATTGAGC
AACCCTCCGTGCAGCAACGTCAGTTTGCTCAGTTGGATGAGGAGAAGCGTATACATATGG
AAAAATCAGAATTTAAGAAGCTATTAAAGGCGTCATCTGAAGGAAAGACATCTATCAATG
GAAACACTCCCGGAGTGGTAGAGAAAAGCAAGTTTAAAAGAAACAGAGCAAAGGTTAATA
TTTGCAGCTTCTATTTTTCTGGATCTAGTGGGCGTGATCAACATTTTGAGATCACAATGG
CCTCTCTACTTCTTTAACAAAATGTTAATGTGTGTTGTGCTGCAGGGCCCAAACCCACTC
TCCTGCAAGAAAAAGAAACCAAAGCCCCAGCCATCAGCTCCTCAAAATCAGGTAATTCCA
TTACTACACTAAGGTATATGTAATACTCGGAACACACTCACGATAAGTATCTGTGCAATT
ATTGTTGTAAAAGCAATGCTGTAGTTGTCTACGGATGAAAAATAATGTGACAATTATATC
TTATATACTCTTAGACAGTGAGACTCATTGCATATTTGCTTTTGTTATTGCTCCTGATAT
TTCATGGCAACAAGCACTGATGAGAACTTGCTTCTTCAGGGCCCGAAGACCGATGGCGAT
GCAAAGCGAAAAAGGGTTAGGAAGCGGAAGAGAAGCGCGAAAGGCAGTAGTCAAGCAGAG
ACAGCGAGTTGATGGACCTACGAAGAAGTTGCAAACAACGGTTGGATGGTGTTTGTTCAA
GTGTCATGCATAATCGTTAAAGAGCTTCATAAATCATGCATGACCGCTAGAGGATTTTCA
CTTCAAAATTTTGACAATGTAAAACTAATAGTTTGTTTGACCCTGTTTGGACCTGTATAT
CCTGTCCCATTTAGTTATTTATATGGGTCATTCCGAAGAAACCAACCATCTGACTCCCAC
TGGCTCAGAGCATCTACAACCGGGCGGGCTGTGCGGTCAGTGCCTGGACGAGTTTTGGCC
ACCCAAACGGGCTCCCGAGCCAAACGTCTGGACTGATCGGCTCTCCTGTATGCGTTCGGT
CATGCCTGCCACATAGGATTGACGGATAGGGCTCACGTGAGGATGCAGGCCCGACGGGTG
CCTCCTTTGTGCTGCCTGGCATCGCTTTGGCGTGTCGTTTGAGTTAGTCTGACTATTTAA
GATGGCGATAGAACTCTAGCCTAGCCCCATTTCTTCTCCTTTCTCCTCTGTCGCTGGCAC
TTCAACTTTCGTCCGTCGCTTGCCATGTCAAGGTGTCGCATCACCACCTACGACATGCTC
ACTTCAGACTGGAGAGTGCAACTGCTGGAACAGATCGAGGCGAGGCAGGCTGCTCGTTTT
GCCGTCAGCCTTTCTCCGAATTCGTCGGAGTCAGAGGAGGAGGAGCAGGATGTCGCTTGC
CATGTCGAGGTGTTGGATCACCACCTACGACATGCTCACTTCAGACTGGAGAGTGCAACT
GCAGAAGCAGATCGAGGCGAGGCAGCCTGCTCATTTCGCCGTCAGCCTTCCTCCGAATTC
GTCGGAGTCAGAGGAGGAGGAGGAGCAGGAGGATATGGAGGGGAAGCAGCCATCGAAACT
AGAGCACCATGGACAAGAAGGCGGCAAAGCCGGAGGAGGAGGTGGAGGCATTGCCGGTTG
TGGGCTTCACCTTGGCGGACGGGGAGGCGGAGCACAAGGCCGCAAATGTGAGGCCACGAG
GTGTTTGACCATTGAACCGGAGCCGCCACCGATTATCTACCCCTCTCGTCTCGCTATGGC
ACCTCACTGGGCAAAGCCCGTCCAACACCAACAATAGCAGGGAGGTCCGGGTCGAGGCAT
CAGTTGTGGAAGCGTCGGAGGGTTGTCGTGGGATGGCGAAGGAGATCTGTGCTTGAGTGA
CGAGCTTCATCACGCGGTGCACGACAACGACATTGGTGAAGTAGGCGGTGGCCGTAGGGA
TTCAACGTAGATATCTTCATCGGTGGTTCGGCCTGGCTGGATCATCGGAGAAGAGGGCGT
CGGTGCACGGTTTTGGATGACAACGATCTTGACAATGGGCCTGGACGTGTCGTGCAATGA
CATGGATGGGGTTTTTTAGGTTTTATTTAGGAGTCTTCGTATTTGGGTTGGTGTGGCAAA
GCGCCATCGTTGTGCCATGGTAGCAATAATGTTCTCCTCGCCCTATCCCCATTCCCTTGG
TGCGGATTTCACCAACGGAGGACGTGTGAAGTTGTTTCTTCACTAAGTCTCGCGGGACCT
GGTCGGTTTTGATTTCCCAAGGATCTGGCTGGATTCAACAGACTTTTTGTGGTGTGCGTG
GCCTTCGAAGTTTCTACGAATTCTTATCGGCGTTTTTCTTTGTGGCAGCGACTTGCTTTG
CAGATCGTGACTGTCGGCATCTCTTGGCTGGCTGGAAAATTTAGGCCCAATCATCATTGA
AAATGTTACTTCCTCCGTTCCGGTGTATAAGTCATTCGCGTAGTTCTAGGTCATCGATTT
AAAAAATTAAATACGTATTATATGTCAAGAAAAGTATATCATTAAATTTTTACACGGATG
TAGTTTCTAAATATATATTGTTTATCATATATGATACATATTTAGATAGTTAAATTGTTG
ACCTAGAACTACGCAAATGACTTATATACTGGGACGGAGGTAGTAAACTACCATATTGCA
ATTATGAAGAGGCGTCCTTAATGAAGGTTACGACTTCGATATACAAAGTTGTACACGATG
TTTATGTTCACTGTAATTTTTATTTGAGCCCCGCTTTGGTACACCCCCCACAAAACGTAG
AAGGATAGAAAGGTCATTTCTTTCAAAGGTATTCGCGTACAGTATATACGTACGCCGCCA
CGTCGGCCCTCCCCGCCCCCGCCTCGCCACGTCGGCACCGC