morexGenes - Barley RNA-seq Database

Contig contig_134465
Source Contig contig_134465
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_134465 (6102 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_134465

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_3945	2	773 bp	AK372202	Available	Available	None
MLOC_3944	2	2654 bp	AK369990	Available	Available	None
CDS Structure of MLOC_3945

CDS Structure of MLOC_3944

Contig Sequence (6102 bp)

>contig_134465 6102 assembly3_WGSMorex_rbca.fasta
TATATATATATATATGCGGTTTTGTAGGTCTGCGAATCTAAGAGACTCTCAAGATGAGAG
GGGATTGGATATAAGTTAACTAAGAGCATCCACTCGCTCTCTCTATCTAATAACTACTTC
CTTCGTTTTTAAATATAAGTTTTTTTAAAATTTTAGTATATAGAGTTATAGCCATATTTT
AAAATATAGATTCATTCATTTTATTTTGTATGTAGTTTTCTAATAAAATCTCTAAAAAAA
ACTTATATTTAAAAAGGGCAGGAGTATATATAAAAGCAAACCAATTCCGATATTTTGACA
TCACAGTATCATCCATGCATGTGTGATGTGTCTTTGTATACGCAGCATGCATGTCACATC
CATGGCTGACGTCTATACGTGGTGAAAAGCAGTGGAGCAACCAGAATGGCCACTAGCACC
AAGCGCCTACTTTGCAGCCCAGGCAGTATACAATGACGACCTCATGCGGTAGCTAACTAG
CTATATATATAAGCACATGCGTACATGTACTACCCACCAAGCTCTCCATCTGTCGTCTCC
TCCCTTGGCATGCACTGTGCGCGCGTGATCGAGTCGACCATGGGCATGGCCGCAACCAAC
AACAACAACAACGTGAGCGCGCCGTCGTCCATGTGGACCAGCACGAGCCGGCGCTGGCGC
CCGTCCCTGGCGTCTGGCCTCCGCGCCGCCCTGGCCTGCACCATCGTGGGCGTCGTGTCC
GTCTACGCGCCGCCGGCCCTCAGGCGGCACCTCACCTTCCCCGCCTTCTCCTACGTCGTG
ACCGTCATCATCGTCACGGACGCCACCGTGGGCACCGCCCTGCGCGCCGCGGCCAGCGCG
CTCCACGCCACCGTCATGGGCGCCGTCCCTTCCGTCCTGGCGCTATGGCTGGCGCACCGC
ACGGGCACCGCCGAGTCGGTGCTGGCCACGTCGGCCGTGGTGGCGCTGAGCACGTTCGCG
GTGGCGCTGCCGGAGTCGCCGGGCCCCGTGGCCAAGCGGATCGCGCTGGGGCAGATCATC
ATCATCTACGTGGCCAAGTTCAGGCGAGGAGACCGCACGAGCCACGAGCTGGTGCTGGAG
CACCCCGCCAACGTGGTGCTGTGCACGGCGCTCGGGGTGGCGGCCGCCTTGCTGGCGGTG
CTGCTGCCTTGCCCGCGGCTGGCCACCCGGGAGGTGGAGGACAAGAGCAGGGCGTACATG
GAGGCCGCCGCGGAGAGGGTGAGGGTGCTCGTCGACGCCTTCCTCCTCACCGCCAACGAC
GACGGCACCGCCTGTGCGGATGACGATCATGAAACAGCCGGGGCCTCTGGAAGACGGCGG
CGATGGTGCATGGCAGCGTGCATGTCACAGGCCAACCGTCTCGCGTCAGCAAGCGCCGCC
CTCCTCCGCCGCATGGCCGCCGTCAAGGTAAATTTAATTTAACGATCGTGCATGAGAATA
AGTACAAATCTTTCTTTTAACAAAGTGGTCGTGCATGTCACGCGTATCATAGATTCATTC
ATATCTAATGTTAAATTCCTGCTTGCGTCAGTTTGGTGCATGCTTAGCTACCCAAAGAGC
TTGCTAGATGCCAAAAGTAGACCAGCACTAGAATGCAGCGCTAGTGCTACCGCTACTTAC
TAGCAGCACGTACCACTGGAGTCCTCGTCAGAAAACGAGTACAGTATGACTTTGGTCTCA
ATACATTATAATTAAGCAGTAGAATCAATCATACTTCTATACGTGATCAGCTTATAATAC
TTTAATTCGTATAATATACGTACGATGAGCTAAACTTGGATTACGCGTGCAGGGAGATTT
GCAGTGGGAGCGAGTGCCGGCAGTCCTGAGGCGGTGGATGCCGCAGCAGCCGGTGGTAGA
TCACGGCCGCATCGAGATGCCCATCAAGGGAATGGAGATTGCGCTCACCAGCACTGCCAT
CGCCGGCACCAGCCCTATGATATGCAGCAGCTGGTTGGAGCATATGAGAGACCAGATACG
CCTCTCCATGCTCACTACACATCGCCACCACCACTGCAGTACCACCACCAGCGGCGCCAT
GACAAAGACCACCATCAACAAACAATCGCCATTGATGTTGATTACTGACAGGATGACGAC
GTTGTTGCCGGAGAGGCACGAGGAGCTGTCTCCCTTCCTCTTCCTCTTCTCCATGCATCT
CCTCCGTCGTGGCACCCTGCAGCAGTTGGCCTCCTCCCATCCGGATCAGACCAAGACTAC
CACCTGCAAGGTAACCCCGGCGGCGACAGCAGCCGACGAATCAACCGATGACGACGCCTT
CTACATGTCCGAAGAAGAGGATGACGAAGAAGTACAGGCCAGCAGCGGAGAAGAAGACGA
CCAGTTGCAAGAACACGAGGCGTCAAACAAGACTGGCGCCATGGAGACGACGTCCAAGAA
CAAGCAGGAGAAGAAGAAAAGCGTGTGGCTGAGGTGGGGGCTGGAATGGGAGAGGGTGAT
GACGGCGGCCAAGTGCGCCGTGTCGCTGGGCCTCGCCGTCCTTCTCGGCCTCCTCTTCAA
CAACGACCACGGCTTCTGGTCCGGCCTCATCGTCGCCACCACCATGACCGCCGGCCGCGA
CTCCACGTGGGCCGTGGCCATCGCCCGCGCGCACGGTACCGCCATCGGCTCCGTCTACGG
CGTGCTGGGCTGCCTCCTCTCGCAGCAGCCGCATCTCATGGAGCTCCGCTTCCTGGCCCT
CCTCCCCTGGATCGTGCTCGCCACCTTCCTCAAGCGCAGCCGCGCATACGGCCCCGCGGG
CGGCGTCGCGGCGGCGCTGTCAGGCATCATCATCGTGGGACGGAGGTACGACGAGGCGCC
CATGGCCTTCACAGTCACCAGGCTCGTGGAGACCTTCATCGGCCTGTCCTGCACCGTCGC
GACAGACCTAGTGTTCCAGCGCAAGGCCAGGCCGACCGCCAGGGCCAGGGCACAGCTCCA
CCGCTGCATCGCCGCGCTACAGGACTGCGTCGTTGGACTGGCACCCACGTCGTCAGCGAA
GCAGCAGCAGCAGCAGCAGCATAAGACGTTGCTGGAGCAGGTGGCGCTGCTGAAGAAGTA
CGCGGCGGAGGCGGGCAGCGAGCCCAATTTTCTGTGGCTGGCGCCGTTCCCGACCAGCTG
CTACGATAAGGTTCATGGCAGCCTGAGCAGGATCGCGCAGCTGATTGGGCTCTACCAGCA
CGCCCGAGCCGTCCTCGTCGGCACCGCCGGCGGCAGCCGGCAGCTAGGCGCGGACATGAA
GCGCTTCCACAGCGCCCTCTCCGCGTCCCTGGAGGCACTGCTGGAGGAGGAGGACGTCGA
CCTTGAGGGCGGCAAAGGAACCTTCTGCGAGGACATGGCGGTGGTCAAGTCCTTCCTCGG
CCATGCGAGGGAGGCACTGTCACAGCAGCAGCAGCAGCAGGAAGAAGAGCAGTTGGCTGC
AGTTTGCCTGGGCTCGATTGGGTTTTGCATGGGGGAGATGATGAAGGAGGCGCAGCAGTT
GGAGGCTCACATGCTCAACCTCAGCCTCCAACCTAGTCGCTGATACTGCCTACCTTGTAC
GGAGTACTAATGTACTATGTCCATTACATCTTACTATCAATGCACTGCATTGTTCAAAGA
AAAAACAAACACTCATCTACTACCATCAACAGACAGCAAATGTAACACTTGTGATCACCC
TTTATAAAAATGTCATCTTAGTCCAACCGTCTCAGCTGCTACAAGTCAGAGGAACAGAAA
CTAGAGTTACAATGGAACGCACCACCTTGATCATCAAACAACAAAGACAGACGCTTCATT
TGTCTCACAAATTACAATCTACTCTCTCCGTTCCTAAATACAAGTCTTTTTAAAGATTAC
ACTAGGGGACTACATATGGATGTAAGAGCGTAGATTCATTCATTTTGCTTCGTATGTAGT
CACTTAGTGAAATCTCTAGAAAGACTTATATTTAGGAATGGATGGAGTAATAAAACACAT
GACCGCATCTAGTCCTACACAAAGCTAATGGCTGTGCGGGATGCAGGCGCGGCAGGGCCG
AAGCCATTTAGCTGGTCTGCATCGCCTCTGAGTGGTACTTGTCCAAGTCTGCGTCTAGAT
CATTGGCAGAAACTGGCTGGCTGCCACGCCCTCCCCTCCCTCGCCCACGACCAACATCAC
CTCGTCCTCGACCACGCCCAACAGCACCACGCCCGCCGAATCCACCTCTGCCCCGAGGCC
ATCCTCGACCACTATCACCACCCCTTCCACGTCCACTGCAAATTTCCAGTACCACTAGAT
GGGTCACTTGCTCAAAATCTTCCAAAAGAATTAGCGCAACACGATAAATGCATATATGAC
AATTTGAACATGGTGATTAACAGAACTAACTTTGTTTTGACTCATACTTGTGAGAATCTT
TAATAGCAAGTACAATCTTCGTGACAAGCATGTTTGGTTCATTTGCTAGCGCAAGAAATT
GGCAAGGTTAGGAATTTAGGGGGAGCTAAAAAATCCTTGCTGCCATGGGCAAGGCAAACA
TTCCTAATCGGTTCTCCCTATGGGTAGGGTCTGCTTGCTCTCGCTTCGATCATGTTTTGG
CCCTGACCCATGTCCTGGTGCACACACACACACACACACACACACTCATTTTAAGCTCCC
AAGGCAACAAGGATCAACACATACCCTTGCTTCTCAAAGTCACTGCTCATGTTGACTAGT
TTCGCTTGCTTCAGCCCTCAGATAGCAACTTGGGCAAATAAACAAAACAATGCTGAACAT
CATGACACAGTAATGCATTAGAAGTGCTACAACATACAAGATTTTCTTGAAATGAGGCAA
GCAAAGGTAATTCATGCCTTGCTTGCACTTTGGCCGATGAAGACGGTCCAGTGCCACAAA
TTCTCCAACTAACGACACGCTGAGTTAGTCACTAACTACACAATACATGAATGCCAACCA
TGCTAATGAACCTTTAACAGCCAGTGGCAGCTGCTGCCTAATTGTGCAAACACTTATCAA
CCCAGACGATAATGATTAAGGATTGTGCTTAGACGAGAGTTTTAGCTTGACCGTAATTTT
GAGAAAGACAGGTAACAATTTTAGCAGGTAACTACTGACCTGTAGGAAGGAATATTGAAG
TTTCCTATCGTTGGGGTATTCAAAGTAAAAATAGCAGGTGCTGGTGGCGCCTCAATATTT
GTTCCAATGACCTCAATTTTCATGGGTTTGCCGTCAAGCTGCACATTGTTGTACCTCTTT
AGAGCAGCTAGAGCATCCGATTTCCTTGAAAATATAACCTCTGCAGTACCCTGGCAAATG
GAGTTGCAGTAATTAGGTGATCTGTGAGCACTCAAACAAAGTGAAATGTGTTCAAAGGCA
GATACCGCAACGAAGTTGAGATGCGCAGGGGCTAAATACCTTTGACCTTCCACTCTTGTC
GTAGTTAATGGAGTACCGCTTGAGATCGCCCACCTCAGCAAAGAGTTCCTGAGAAAATTA
AGCAGCATGTTGCAGATGAGACATGAATAAAGAGATTCCCTGGTTGCACTGAAGGTGTGG
AGCTAAATAATTCGGAGCCTTGTCTGCTCCTAATGCAGCACCGTGGTATGGTCGGACAGT
AAAAGAACAATATGAAGAATGGAAACTTGGATTCCATAGATATTATTCGAAAATGACATT
CTTGAGTTGGTTAGGATGAAGCCGTGGGTTACTACTGTGTGGAAACCAGGTTGAAGGCAT
GCTGAGATGGTAACACGCACAGGAGAACAGAGACTGCTATTCCTAGGGTTCTAGGAGTAG
GAGGGCCTAGTGGCTTTACCTTGATGTCCTCGTTGGAGACGTTGTAGTCGAGGTTGGAGA
TGTATAGCTTGGTGCCCGTTTCGACCCCGGACGGCGGCGCCACCAAGGCCATCGTCTGGG
CATGGGCATAGGCATGGGCCTGCTGGGCAGCATATGCTAAAGCAGCCGGCGGCGGCTGTG
CTCACCCACCCCGGGAAAACAAAAGGCAAGTTTAGATTGAGTGAGCTCCAGATCTCCGAA
TTAGGAGGAGGAGGAGTTCAGCATACCTGGTGCTGGAAGTTGAATTGGTGGTAGGGCGCG
GCGGCAGCGCGGGTGGCGGCGCGAGCCTGGAAGCGGCGGCCG