morexGenes - Barley RNA-seq Database

Contig contig_134128

Source Contig contig_134128

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_134128 (3682 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_134128

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_3875	1	869 bp	None	Not available	Available	None
MLOC_3876	1	2225 bp	MLOC_3876.1	Available	Available	LOC_Os02g57290.4, FRAME:-2, EVALUE:0.0, 13102.m06603 protein cytochrome P450, putative, expressed

CDS Structure of MLOC_3875

CDS Structure of MLOC_3876

Contig Sequence (3682 bp)

>contig_134128 3682 assembly3_WGSMorex_rbca.fasta
GGTGGCGGCGGTCGCGGCCTGGCCGACACCACACTCGCCACGGGCTCTCCGCGGTTTCCT
GGGCCTTGCAGGGTACTACTGGAAATTTATCCGGGAGTTTGGCCTCATCGCGTCCCCGCT
CACGCGTCTATTACGACGCGACGCCTTCGCCTGGGATGCGGAGGCCACAGATAACATTAA
AGAATACAAAAAAAAACTCCACTAATATATCTCTCATTAAGGAAATAGTCATCTATACCT
TTGATCTTCCTTGGTCCTAAAAAGGGATCTGTTGCTAATGTATTTACTGATTATTACAGG
GTAGTAATAAAATTATGACACATAATCCTACCAGTCTATAAAAAGTTACAATTTCTAATA
CATTTTGCTTTATAATGTCCAATGGTTATTGGAAACATGTGTGTGAATCTTTTCTGGGAT
ACTCATAAAGCAACAACATAGTCACAAAAAATTCAACAGAGGATGTTTAAGTATGATGGC
TTATTGCTTTTGGTAAAATCTTAAGGTGAAAAATAATTGCTGCTTTGTTTGATCAGAACC
GTGATTTCCTGTTGCTCATTGGAGTAGCATTTTAACATGATTATCATGGATACGAATTTT
CATTCCATTAACCATAAATTTAAATTCAAGTTTAGTTCATCCAATTTATCTCTGCATCAC
TATTCACCCTCAATAAGATTCAACTAACTATATTCCATATTACTGTCTGAATACCTTCAG
CAAATCACGGGGTTGTGGCTATGTGCTAGTGTGCCACTACTATAGAAAAATAAATATAGC
ATTGTGCATTGACACGGTCTCCTGTACATACATTTGACCCATTTTTTCTAACTATATTTG
TCATTTGCAAATCAGAAATATAAATAATTTTATAACTATCAGTGGCTGAAAAGTTTGACT
GCACCAATCTCAGGACATCTATTTTGGATCTGCGTCATTTATGCCAGAATAAGTACTTAG
TCTTAATTAATAAGAATCACAAGTGGCAGGTTAGATGTTGAATCATAGTAGAAAATAAAA
ATTAACAGGTTTGTGCATTCAATGACCAACTTTGGTCATTCACTCATTGATCTAAAGGTA
TATATTTTTCTTCTGACAAAAAAAAGGGCAGCCCGGTGCATGNNNCTCCCGCTTGCGCAG
GGTCCGGGGAAGGTATATATTTTTCTTCTGACACATTTTCTAAAAACAAATATTCTGACA
ACAAGAAGAAACCTAGCTAGAATGAGCACTTAAGCATATTCAAACTTTCAAAGGTCAATT
CTTGCAACAGAAAGTAGAAACAACTAGTAATAAACTTGATAACTGGAGTGACACATGGTT
TACCCAAAAACATTTTATTACAGTAATAGGGATGGAACCTGAATTTTTGGTTTGTCTCAT
TTGGATTCGGTCCGTCCAAAGGCCACCTTTCCGGATTGAAAACATCCGCGTCATCCCAAT
GCTTTGGGCAGCGATGAAGGTTCCAGATGGATATAAAAATATCTTCTCCCCTTGAGAAGA
ACAATATATATTTTCAGAACTACGAAAAGTTTAGCTTCCCATGGAAATGCTAAGTATAAA
TAAACAGTATTCACACATACAAATACCCAACAGTAACAGCTAAACAAACTTCGCTACCAG
CAACAGCATAATGACATAGCAGAAAACAGAATATGTTGAGTAAAATAGTCTGCACAAGAC
TGGGAAAATGCTGGAACACCCTAATGTTACTCACACGAGTATCTAAATAAGGGAAAAAGA
TGTGGAAAAGCCCAAATAAGGTAAAAGGAGTAGAACTCCCATGGTAATCAAAGTGGTTTT
GTAACAAACTAATAAACGATCCTTACTCCTTACACTTGTCTAGAGACTAAGCCAGCCTTT
TCTTTAGTGATTTGACAGATGGAATTCTGCTGGAAAATGCTTACTTGCCGATCGGGTACT
CTCCTAGCATATCATCCTCAAGGGAGCGGCGAATTAAAACTGGCGGCTGCGGGTATAGTC
TCAAAGACTGCAACAACAGCAATGTTATCATTCAATTACACAACTCATTATGTGGCAATG
TAACACTTTTTGGTACTTACTTCATTAATAACTCGAGTAGTATACTTCAGTTTCTTCACA
TCATCAATTGTTGGCAGACCATCTCCTAGAACAGCATCAGCCTGTGGACAATTGAGCAAA
GAAAACTCAATTGGCATTTGTACGATTCAAAACTGTGAACCTCGAAAACCCGCATTAGGG
ATAAAAGTTGAGTCTACCTCAGCTTGGAGCTTGGACATTACGTTGGGATACTGCAAGTTA
GCAATATAAAACACAGCGAGAATAAGTACCAATATTGATGGTTTAATGAATATGAAGATG
ATACAGCATCATTTGACATTGCTATACTACCACAGCATTGAGTTTTGAGTCATTGGCAGT
ATCGCACCTTAGATAGAAGATAAAATGTCCATGTCAAGACTGCTGCAGAGGTCTCATGGC
CAGCTATGAGCATTGTCATCAGGTCATCACGGAGCTGCTTGCTGGACACCTAAGGTAGAT
GGATTGAACAATTAAACGATGTGAATATCAGAAAATTCAAATGTCTAAAAGACTTTCTAA
GTGCAGCTCTATCATACATCATCTCCAGATGCCAATAGAAAGTGAAGAATACTAGGGTCT
TTCTCATTCATGTATTCCTCATGAAACTGCAGATCTTCTTCATCTACCATCCTCTGCAGT
AAAAGTCCCAGTGTCATGATTTTTCTGAACACAATAATTACTATTTACTAATGTCAAAGT
ATAAGAGAAGGCTTACCTTGCACGTAGCAATTAGTTCATCGAGAATATTATTTATCAGTG
CAAGCGCTTCATTGACCTTCCTCTGCCGAGGGGAGATGTCTTTCCATATGGGTATTTCCC
AAGTTGGAATAGGAGATGTACTCCGCATTTCTGCTTCCCGCAGTGTTACATACACAGCCT
GATCATGAACCGGCAAGCCAAAATGGTAAACTTTATGGAAAATAAGAAATATCACCAAAT
GAAATTTCAGAATGTGCTCAGGAACATGACAAAATCTGAACAATAACCTCAACTATTCCA
TTATCGTAAGATAATGAATCAAAATCATAATTGAACACCGCCTTCCCGATGACATCCAGC
GTTAGTCGGGAGAAGAGAGACTCCATCTCCACATCCTCCCCGTCCGAAGCAGCCTTGTCG
AGCTTCTGGCAGAGCCGGTCTGAAGCGTTTCCAAAGAGACCTATCATCGCTGTCACGTAC
TGCCGAACACAATATTCAAGTCAGTAAAACCACACTAGGAAGAAAGCAATACACACAAAA
ACTTGACTGTGAGTAGGAAGCTAGAACCTTCTGATGCAATGCTGGTACAATGGCACGCCG
TCGAACACGCCAGACCTCCCCATCAGCCGGGATCAGACCTGTGCCCATCACAAACTCCAG
TATTTCCGCAAGGATACCCTGCACCCACCATGATCAAACCAGGACTGAATCAAACATCAT
GCTACTCGTTTGTGAAGCCTTTTGAATCATTTCTTTACTGTTTGGAAATGAAAAATTCAG
AACCAAACCTTGGAATAAGCCTTGGAGTTGTCCCTGAGGATATGCTTAGCTACATCCGGA
TCAGAGACGATGAGGAAAGACTGGAGAAAGAAGATGATGATGAAAAAAAATGTACAGACC
ATTAGCAACATGACAGGGTTCA