| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
| No map location |  |
No map location |
Predicted Genes from contig_134107
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_3873 |
2 |
502 bp |
MLOC_3873.2 |
Available |
Available |
LOC_Os01g21820.1, FRAME:-3, EVALUE:7e-39, 13101.m02319 protein preprotein translocase subunit secA, chloroplast precursor, putative, expressed |
CDS Structure of MLOC_3873
Contig Sequence (4000 bp)
>contig_134107 4000 assembly3_WGSMorex_rbca.fasta
TGTCTCGTTGATCTCGTTTTATCTAACATGATTCACGGATCTTTGGAAAAATGTATGCGA
AGTAGATCCATTATATACACATATAACATAGTAGTTAGTCACTGACTTAATTTTGGGATA
TACAAAAAATATCTTAGCACTGAGAATAATAATGCAATACTTACTGCCATTACTCGACCT
GTGAACTCATCCACAATAAGCACTTCCTTGCTACGAACAATATAATTCACATCTCTAAGG
AAGAGCTCCTTGGCTTTGATTGCATTTAAAACATATGAAGCCCACTGTTCACGAGGATCA
TATAAATCATCTATGTCCAGTATTTCTTCAGCGTCAGCGTAGCCTTGTTCTGTTAGTAGA
ACATTTCTTTGCTTTTCATCAACCTGAAAATAATATTTATAAGAGAACGAATTGGATTGT
AGCTGATAAACTAATAAACATAAGTATGAATACAAGAACAGATTTATGGCTGGGTCAAAG
AGAAGATGTACGAGCAATATATTTTAAAAATGTACTATTCTGAAGACAACCGCAATAGAA
TACTTCTTACAGAACGTACAAAAAAAATTACCCTTCTTTTCATTAAGAGGAGAAGCACAA
TTGTTACAAGAGTTAAGAGCCAAGGCAACAAGTGCCACCCATAACAACACACAATAGTAA
GTGAACATTAGTACCAGTATTTTCTATTTTGTGCGATAACATAGTATCAAACAAGGAAAC
AGGTGAAAGATGGGGACAGAAATACAAGTTTCTTTCAGGGAAAGCGACATGGAGAACAAA
AAAGAATAAAGTTGTGAGGCTGAACCATGATGACGGGATGCTTACAGAGCGTTAAGGAGT
ATTGATCTTCTTACAGAGTGTTAAGGAGTATTGGTCTAGGTGTCCATACATATTCATGTT
AGTCTAGATTTATTCTGTGTATCTCACGTCTCTTGTACTATATATTTGCCCCTTGGCCTA
TGCAAACAGATAAGTTGCTCCATGTTTTCTTCTTATCAGGCCGCAGGGACTACTTACGTT
CTGATGGGCAACGGTTTAAGTGCTTCTGTTCGTGGTGTTGGCACGGTCGATCTGAAGCTT
ACTTCGGGGAAGATCGTGCAGCTGAAGAACGTGCATTATGTCCCCNCCGTCAATAAAAAT
CTTGTTAGCGGATCTCTTCTGTGTAAAGATGGCTACAAGCTTATCTTTGAGTCCAATAAA
TTTGTAATATCCAAGTATGGAATTTTTGTTGGTAAAGGTTATGAGTCAGGAGGCTTGTTC
AGACTATCCTTGTCAGATGTTTGTAATAAAGTTGTTAATCATATTTGCAATAATAGTGAA
TCAATTGTCTGGCATTCACGTCTCTGTCATGTTAATTTTGGTTGCATGACGCGGCTAGCC
AAGCTGAACTTAATCCCCAACTTCACCGTTTTCAAGGGATCTAAGTGTGCCAGTGGAGAT
CTTCTCAGTACTGAAGGGATAGAGCTGAAGAGACAATGATGAGTCTCTCCCACCTCTCAC
CTCCCCACCCAACTCCCTGACGATCTTCACCTTTCATCTAAATGGAGGGGCTTCTACACT
GGGATTTCTCGCCGGGCATTGCCCTGGCCGATCAGGTGAGATATAGGTTTGGTACTTCGA
TCAATTTCTCAAACGCTAAAAACAACAAGGAGTTCTTTCTAGTTGTCTCCTTTTCTTCGG
CTTCATTTACTCTTTCGGTGGAATCGGTTGGGGTTGCTCTACAATGTTGTCTTGGTAGTT
CTAGCTCGGCTTACAACATATTTCAAATCAATGATCGATCTTTTCGTTTCTCCGTGGCCA
ACAACAAAGTGGAACATTTTATATATGGACTTAAAGGTCGTATTTGGCCAGACTTTGTTT
GCCATTTTCATCTCTATAGTGGTCGCTATTCGAGAATTTCTATTCATGACTCATGTTGGC
ACGCGGATGAACAACTATCTGATTTGTCTGCTCATTGCACCATGGCTATCAAATCTAAAT
TGGGTTTTCAACCTTTGTCCAATACCGGGAACATGGACTCCTTACGGGAACTAAGCAAGT
TCACAGTCACCCCGATTGATCATATGGCTTTCTCTAACAAAAATGAGGTTGAATCCTCTT
GTTCTACTCTTGGTCCTTGCATAAGGAATTCTAATACTCATATTAAACTTGGATCTTTTT
CCATTAATGATAGTCCGTTGATTACGCCCCAGGTCTCTCACCTATCTTTAATGGAGCATT
ATCTTGCCCAGGCGGCATTAGAGGATCAGCAATCAATTGAGTATCTTTCTTTGGGCACTT
TCAAATGTGCCATTAAAGCTGATTACCCTTCCCTTCCGCAAGGTTTCCTAGCATCGGCTT
ACAAATATGCTCCTCATTGTGATAATTGGCCGCCAATTCTCTCGGCCCGCCACAAAGTAG
ACCTGGCCCAAGCCCAGTACCCAGATGAGGAAATAAATCGCATTGCTGATAATTGGGCAA
ATTTGTGTACACGTTGTCTACAATGGAGCCATAAAAAGATTGCATGCCAGGGTCGGATTA
TATGCATCAATTGCTCCACTCCTGATCATAAGGCCATTGATTGCCCTCGTTCTTTGTGTC
ATCAACCTATCTCTGGTATAAAATCTGTAATTGTTGGAAAGTGCATTCAATCTGCCGGAT
ACACAGCAGCGGCCTTTTCCCCTGCAGTTGCCAAACGAAAATCAAGGCCGACCGTCCGAT
GTGCATGTTGTAGCTATTATGGACACCTGGCACGATCCTGCCTTAGGAAACTCAGGGAGG
GGCGGTGGAAATGGGTCCCGAGGAAAAACAATAGTTCCTATACTACCCCTCATGTTTCCT
CTTCTGCCTCGACTTCTCAATCGTCGCCCCCCTGCCACATCTCTGTTCCATCACAGTCAC
CACCTTCGCTCCAGCTTGTCCCCATGGCGAACTACCCTCTGAACCTAGTGCCATTCCTGC
TGCCTGGTTTCGCCATGGAGCCAGGACTGGCGGACTGCGTGGTGCGCAGCGGCATGGTGG
TTGGACCGTTCCCGCCCCTCAGACACGACTTCCTGGCCATTGCGGAGGCGAGCCACTACG
TCCCCTTGCACCGTCGCGCGGACATCCACAACACAACCGAAGGTTTGCTCCATGAGGCCC
AACTTTTCACCACTGAAGTTAGTGATCATCCATTTGGTATTGGGATATTTGGATTTGCCG
ACGCTTTTCTCCGAGACACTGATGTAGCCACCCCACTCGAATTAGAAGATGGAGATCTGC
TTATCACTTTTGTCCCGCATAATGAGGCTTTGAATCGCCACAACACCACCTTTGGACCTG
AAATTTGGCTAATGTATTTTGGATTCCCGTATGACTATCAGACTGAATACTACATTGGCA
AATCTCTTGGAGGTTTTGGTGCTCTGGTTTCTTGGTATAATCCTAGACAAGGCAGACGCT
TTGTGCTACTTCGGGCCAGAGTGATTGGTCTTCGTCTTGTTCCCAAAAGTTTTGTGGTCT
GGCAGTTAGGAGGCGCAAGGGATTGTTGGACTGTACAAGCAACGATCCTGAGAAGCAATC
ATTGGAAAGCCTTGCTGCCTGAAGTCCCTCCAGCTGGAGAAGAACAGCCACCTCCTGCTG
GCAACCCACATCCCCAATTTGGTCCAGAGCTCACCGTAGAACAGCTCTATCAACAGCAAG
TTCATAATTGGCTGGTCCGAAACACAGCACCTCCCAATGCTCCGCCCGCTGGCCATGGTC
CTCATGCTCATGTACATGCTGGTTGGGGTGCTTGGCCAGAACCTCCTGCTCCTGCCCCAA
TGCTTCCCCCATACTTGATGAACCATCAAGCATGACTTGCTTCGCAAGGACTGACAGTGC
AGCATGGCATTGTACCTGAAGATAATGACACTCACAGTGCTGCGCAAGCTTGGAATGATG
CAATTACTCCCTACGGGCGCCCACCTCCGGCGATGCTCCCTTACGAGCCTGGGACGGCTC
GGTCCGAGACGGCGGGCGACTTACTCCGCACCCGCGACGA
