Contig Data
morexGenes
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Map Locations of contig_133918 (2315 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_133918

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_3847 3 1104 bp MLOC_3847.3 Available Available LOC_Os10g35670.1, FRAME:+2, EVALUE:2e-40, 13110.m03210 protein zinc finger, RING-type, putative, expressed





CDS Structure of MLOC_3847






Contig Sequence (2315 bp)

>contig_133918 2315 assembly3_WGSMorex_rbca.fasta
GACAAGTGGTGCGCCACTACTATATAGCAGTGGTGCACCATGTGCAGGTGCGCCATTAGT
GTTATGGACATTAATGACGCACCACACACACGGTGCGCCACAACTAATAATTTTTTTTCC
AAAAGTACTAATGGCACACCGGGGCAGAGTGCGTCATTACTAGTTTAACTAGTAATGGCA
CACCACTCAGCCAGTGCACCACCGTAGTTTCCCTCCTCTCGCTCCCGCACCCAAAACTTC
GACACCAACGATACTCCACACTCCCCCTGCCGCCGGGATGACCGAGGACGTGCAAATGGG
CGAGCCTCAGGCAGCCCCTCCCCCCGCCGCCGCCGCGGCGGCACCGGCCCCCTCCACCCT
CGAATGTAAGCTCCTCTCCCGCTCCCCACAAACCCTAGGTATCTCCTCCCCACGCCGCAG
GGCCCCTCAGATTTGTTCCGACCTGCTCCTGCCCCAGATCTGAAGGAGATCGCCGCGGTG
ATCGAGGCGGGGTGGCTCTCGAAGGAGGTACGTCGGATCTCCCGCGCCGTCCGCCTCACC
GGTTTGGACGACACCACCACCATGTCCACCCACGAAAGGAAGGCCAGGATCAGCGAATTC
TATGGTAAATTCTCTATAAATAAATAACTGAAAACAACAGCATATGTTCTCGCCGTAAGT
GTGTCGTGCTGGAGGTTGGACTGATGCCCATCGTCTGTTTGCCTGTCCACAGCCGTGATA
TTCCCCTCCCTCATGCAACTGGAGCACGGGATCAGCGACTCCGACGACCGGAGGCAGAGG
GCGGTGTGCTCCGAGAGGTACATGAGGAGAGACGAGCCGGAGGACAGCAAGAGGCCGGTC
TCCGAGATCGATGCCGAGATAGAAGAAGAGTGCGGGATGTGCATGGAGCTCAACAGCAGG
GTCGTGCTGCCCAACTACAGCCACGACATGTGCATCAACTTCTACCGTCAATGGTGAGTG
AGAGCAAAAACCTGACCCCCATCTCATGATTTTCTGTTTTTCTGCCCGTGTTGAGTTCAT
CTTTAACCAGAGCAAACATGTTTGGTGGTCCTTTGGTTCAATGCGAGCTTCAGAGGTTGC
TTGGTCGATACTTCATTCTGGTGTTATTAAGTGCTTCGGCAGTTGCCACCAGAGCATCTT
TATTCAAATGGCAATGCACTACTATGAGTAGTAATTAAGCTGGCGTGACCATCATTTATG
GAAAATACTTAGGAAGCAACCTCTGTATCTGCATCTGCATCTGCTTGCCAGTTTTGTCCT
TGGTTCTTACAAGGCCTGACTTTCTCACTATATCACTTACTCTCATTAAGCATTAGGAAT
TTACAAAGTTCCGCTCTGAAAAAGTTACAAGTTAAGTTCACTGCGTACACGTGACTCAAG
TGAAATTTTTGAGGTTTTAAGCTGTAAAAATGAGTTGCACTCTGGTTCTGCTAGAATGGT
TGCCGCATATAGTTGAAACTCTGCTGCCAAGCGCAGGGTTGTAAGTTACATATGTACGTT
AGCAGAAACTGATTCATACTTCATAGCTCCTCACATTTTATTTTATTTACCAAATTTATA
TCTTCAGTGCATGATCTTCAGATTTATCACTATATTTTGAGATAGAGATGTTGATGTTGA
TGGGCATGCGAATGTGGTGGCCGAGGTAGGACTGTATATGTTGTCCACTTGGCTACTTTA
TGGAAATGTTCTAATTTTGTTATGCCAAGCTGTGCCTGTCTTCGCGATGGATGCAGTAAA
TTTTAGAACCCACAAATTTTATTTGTGCTCTAGGACTCATTACTTGTGCTTGTGCAGGAT
TGGGTACAGCACGATCACCGACGCAGAGGAGAAGGGGTTCATCGTTCCACTCAAGGTCGG
TAAAATCGACCCCTGCCCCACTTTTGGTGCTTCCCCTGTTTTGTGCTCGTGCAATTTGGG
AATGGTTCGGTGTCAGGAACGATGATTTGCGCATCCTGAATGTAAATTGTTCCCTGTGAT
TTTGCTATGTACCGGCTTCAGTTAGTTCAGTAGAGAACACATGTGAAGGGAATTCAGCAT
CTCCTCTACTAGTCTCTTCTAATTGGGTTATGTAATCAAAACGTATACAAAAGAAATGAA
GGAATTGCCTCGTTCGGCGCTAGGAATTTTTCGCACTTCTTTTTAGAGTTGCCATACCAT
ACAATCTCTATTAGAAATAAGAATTATACAGTGCTATATATCTGGCAGGTCTAGATTCTA
TGGTTCGTGTATAAGGCATTGATTTTGCAGTACTATTTGTTCTCTCGTGCACTAGCACCT
AGTTGCTTCACTTGCACAGCTGCTTTGCGATGGCA