morexGenes - Barley RNA-seq Database

Contig contig_133600
Source Contig contig_133600
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_133600 (7710 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_133600

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_3803	1	526 bp	None	Available	Available	None
MLOC_3804	1	1334 bp	MLOC_3804.1	Available	Available	None
MLOC_3802	3	2938 bp	MLOC_3802.1	Available	Available	LOC_Os05g37970.3, FRAME:+1, EVALUE:3e-80, 13105.m03962 protein universal stress protein domain containing protein, putative, expressed
CDS Structure of MLOC_3803

CDS Structure of MLOC_3804

CDS Structure of MLOC_3802

Contig Sequence (7710 bp)

>contig_133600 7710 assembly3_WGSMorex_rbca.fasta
GGAGAAGGAGGTGGAGGAGGAACCACGGGAGGCGGAGGCGGAGGAGTGTGCCACTGCTGT
TGCGCTGCCACCGCCAGCAGTACAGCCCGTGCCGGCAGGACAGACGACGAAGGCGCACGC
AACTGAGTTGTGGAACACGACGTTCCCCTGGGTCGGCCCACCTACGCTGGTCGACCTCAC
CGACTCCGACAACGACGTCGTCGCCGCCTAGGGTTGCCCTCGTAGTTTTAGTTTTTTTTA
TGTTTAATTAGTGTAATGCGGACGCGTGGACTCTCGTTGGCCTTCGTGGCCGGCTTTTAA
TGTTTAATTATGCACTTATGTATTTTTTTTCGCATGTTGGTAAAAATGAATACGGCCAGC
ATTGAACGTATGCGTCGATACATTTACGAATGCAGACGTTCGTGTCTACGTGATCGATCC
AAACAAACAAAAACAAACAAAATTATCATCCATTTGGGTCGGCTCGTTCGAATTGCCCTC
AGCACCCCTTTCCCATTCTCAACCGTTTCGCGCGTCGCACAGAAAGCGGAGAGGAAACCT
CTGTGACGACGAGCAGAAAGGGCATCCACAGTTTCCCACCCATCCACCGGCTCGCGGCCT
CCACGTCAAACTGCCCAGGCGCACCGCGGGCGCGCACGACCCAGCGGCGCCGCTCCCTGC
CGCCGCCGTGCCGTGGTCCAGGCGGACACGCCACGCGCAAAGATTCCAGTGCACGGGGTG
CCAACGGCAGGGGTGCACGCCTCCCCACGACGCCGCGCGCCGGCCTCTCTCTCTGGTCAC
GCCAAACCAAAGGCCGGTGCGCCACACGCGGTGAAACGTGCCGCGCCGCTCTCTCGTCTC
TCGTGTCGTCCCACCCAAGCCCTCACCCAACTCCGGCCAGTCCTTTTAAGTACCACCCAT
CTCTCTCTCTCTGTCCTCGCCCACAAGGACAAGCATTACTGCGCACACTCGCCATCTCGC
CACGTGAGAGGAGAAGCCCAGGGCGCAAGTGTTTGAGCGGATCGGGAAAGGAGCCAGCGC
GATGGCCGGCGGCGCGGACGCGGACGGGGAGCGGAGGATCGGGGTGGCGATGGACTACTC
GGCGAGCAGCAAGCGGGCGCTGGAGTGGGCCGTCAAGAACCTGCTCCGCCGGGGCGACAC
CGTCGTCGTCCTCCACGTCCTGCGCCACGGCGGGGAGGAGGCCAAGCACGCCGTCTGGGC
CAAGTCCGGATCCCGTAAGCACGCGCACGGCGCACCAACCCACCTCTCCGCTCGCTTCGA
TCTCCAACTAACGCGCGCGTTGCTCGATCGTTCCCCCCCGCAGCGCTGATCCCCCTGTCG
GAGTTCCGGGAGCCGGAGGTGATGAAGAACTACGGCGTCACCTGCGACGCCGAGGTGCTC
GACATGCTCGACACCGCCGCGCGCCAGCTCGAGGTACGTGTATGTATGGTCTGGAGGCGT
TTCGATCCCTTTGATTCGGTCGGCCGATCGAGCGTGGAGGAGGATCAAGTGAACTGAATG
GCTTCCATTATTGCAGCTCAAGGTGGTGGCGAAGCTGTACTGGGGCGACGCCAGGGAGAA
GCTCTGCGATGCGGTGGAGGAGCAGAAGATCGACACCATCGTCATGGGCAGCCGCGGCCT
CGGTCTCATCCAGAGGTACAATACTACTACTGCTGTTGTCACAATGTTGCTTCGGACATG
TGCAATCCTTTGGATGTAGACAACATGTATTCTCCTAGAGCACGAAATCGCCAGTTGCTA
CTTGTATATAAAGTACAGTATTCTTGTTCAGATAGGCAATCCTCACGTCATTGGGGTGTG
GATAAGGTGCATACAAAGTCAGATGTCCGTGTAGCAATACTTCAAATAAATTGTACCAGT
ACCTGGTAGATCGCTTGGATCGATTCGCTGCATCGTTCCATGTTTCAGAGCTCTGTGGCT
TAAATTACAATATTCATTTCGATTAGAACACGGTTCACGGCTCATGGGCAGTTAGAACAT
GGACCATCAAGCCGTTCCCTTGCACTTCTTAACTTGCACGAGCCATGATCTCCTATTGTC
GATTCTCTATAAAAATTGAGAGCGTTTATCTGTCTGGCATCTGCATCGTGCTTGCCAGAT
GGTTTGTGTGGTCAACTGAAACGGCAAGTGGTATTCAGTAAGCTTGTAACATGTTAAGCA
ATAGAATGATGTAGATAGACTTGGTCGTCAACTACAGCGTTTGTGATATTCAAGATCCAG
CATAAATAATTGTTTGGAAAAAAACTAGAACAAAGAAAGTGCTGCCAGAATGTGAAAAAC
AAAATCTGGATATATGACTTGGGTTGCCTATCTTGTCAAGTTTGTTTAGAGTTATCTTGA
GGAGTGTCCACGTCCAAATAGTATTATGACTAATTCATGCTAAACACAAATTAATATATC
TATCAGTAGAGAATCATGGTAAATGTCGATGTATTGCATATTTGCATACCAAATATTGAT
TTACCCGCTCAAGCTGATCCTTGGATGAAATTTCTAGTGTCAAGAACAACAAAGCTTAAA
TTATGTAATTGTAGATTTGACTTTCGTTTATGTACTGGTAATCGAACGCATGGAGTGCAC
GTTTGGGAGGGAATGCTTTAGCTTAAGTTTTAGAAGGAATCTGCGTGAAAATTCTTATCA
ATAGGTACATTAGATGCGGATGGATGAGTGGTTAAGTTATTTAGGATCAGCCATAACCAT
ACTGGAGATGGAGATAGAGCTGCAGAAGATAAAAAACGATGGTCTAATCTTTTGTGCACC
ACTAATAATAATCCAATGAATAATGAACCAAGACACTTGATTGACGATGTTTAGTACAGG
AGCATTGTTTAGGCACCGCTCAAGATACAATTATGTACGCAGAAACAGAAGTCAGAAAAT
GCTCCATGACATTTCTGTAACTTGCAACTTTGTATGCATCAGATATCAGAACTTGACCAT
GAACGGTATGGCCCCTAACAGTTTCAGCTTGTTCATATTTCGCTGACCTCCTATCTTTGC
CCGGTGATACTGCAGGATTCTTCTAGGAAGTGTGACCAACTACGTGTTGTCGAACGCGTC
GTGCCCTGTGACAGTCGTGAAGGGAGACTGCTAGGTTTGTGATCGGTGTTAATCAGGCAG
GATGCACATCATGGTTTTCTGCCCTGTTACTGTATCCGAATAAATTATGGTGGCTATTGT
GTTTTCTATATGCCGGAGCTTTGACGAATTCATGTGGTCATGTTTATCTCTGAACATTCG
GATTCAAATTCAGTAAAGTGTTATGTGCCCAAGGTTCCGTGCGTGCCCTGTTCCGGGACA
ACAGAAAATTTGCGCCCTTCCTGTGCTCCGTTTAGTTTCGGAAAAGCTAACCTGCGAACG
TCGGATTTTCTGCATATCCGAGCGAACATGCTAGCCGTCCTTGGATTGGCGCATGAATCT
TGAAGCAGAGGTCAGAAGACAGGTCAGCTGTTGGGAATGGTTTTTCTTTTAAAGCTGTTG
GGAATGGTTTGCGACACTGTATCGGCGCGAACGAGATCCGCTCACCGATATCCCCCTCAC
TCGTGTGGGTATACGGTGGCTCAGGCTTTCGACCCAGGCGAAAAAAGCCCGATTCTAAAA
ACCCAGGCCCAAGCCTAGCTCGTCACGCCTAATAAATCAGGTTCAAGCCCCGTTGGCCTG
GCCCGCGTGCGGCTAAAATCTGTTTTTTTGCAAGCTTGAGCCCGGCTAAGGCCCGACCCA
ACCACCATGCTCAATTTTTAGGCTTGAGCCTGGCCCGATGGCACGATCAGGCCTTACCCG
TCCGGGATTTTCGGTCTCGGTCGGGTCGGGTTGTCTCGCCAGATTGCCCATGGCGAGGTA
TACTCGTCTCCCACCCTCCGTGGTCACATGACCACACACAAAGAATGCCGCCATCGTCCT
GCTCCATCGCGTGCCTTGTCGGTCGTGAGCCGCCATCGACCGGTAAGGCCGCATCACACG
GGTAGAAGCGGAAGCGGGCGGAGCAGGAGGAGGAGCAGGCGACGAAGACGAATGCGGTAG
TCAAGTGATTTGGATTCGTGAGGAGATACAAGGGAGAAATGGCGCCCGGAGGAGCTCGAT
GAAGAACTGCCCGACGAGGAGAAAGGGGGGCCATCCCGCGCACCTCCCTCGACTCGAGAG
TGGGATCACGCGCCCTTTCGAGCTCCGCTCCCACATCCCATCGAGTTCCACAAGCAGCGG
GAGGGGGGTTGCAAGGCTTGGCGACGGGCCGCGTGGGAGGTCCATGCCGACTCCGATTAG
TGGCGATGTGGGTCTGCGTGTGGTCGTCGTTCAAGGGCGAGAGGCTCAACGGCTGTAGTT
GGTGTCCTCGGTCTGTGGGAGGAGGTCATCCACCATATGGTGAAGGAGGTGAGCGACCAT
GACGACTAACGACCTCGTTATTAGAAATAATGGGCCTGGCCCACGTAGAATTTCTAAAAT
CTCAAATTAGACCCAAGAATAAATGACAAGTGATGATTCTAAAGTTTAGTACCATCCCTA
AAGTTGAGAAGGTGTGAGTTCTCTTTATATAGTGAAATACAAGACCAAATGTGGGTTCGC
GCGTCACCTCGCTCGGGTCGGAGCGGCGCGCGCGTGCGATGTGTGCGTGAATGATCCACA
GAAATCAAGTTTGTTGCCTTGTAGGGACGTAACATCCTTTTGTCGTTATATTATTTGATG
TCTTAATAAACAAGTTGATTGTTTCCTTGTCCGGTAAGTTTGACTTAGAAACAAAGTCGG
TTTGAGATCATGATCGCGACACCGTACCACCTCTGGTCCTTCTATATATAGTACTTGCCG
CCCTCGGCCAAAAATACACCGTAAACACCTAGGGTTTTGCATCTTCTCGTAACTTGCAAC
ACCACCGTAGTCTACTCTATCCCGAACACAAGCGTGCATCGGCGTGCGGGAGAGCAGGTC
TTGGGAATCGGGCAACCATATGCATCGACCCACATTGAAACGGGGCCATTCGTTGAGACT
CGGGACCTTTGTCTTTGCGATCCTGCGTTGGGAGAGTACGGATTAGGTTTTTGAGAAGCG
TTGTGCGCAATTGCTCAAGTTTTGTCATCACATGTCATTTTTCGTCCAATTCCGGTGATG
CTACTCATCGTCGTCTCCAATGCCATCAGCAACAGATGATCGTCAACATCATGAAAGAGT
GATTCGATTTTGATGTCCGGCTTTGTGCTCGTGGGATGATTTCGTTGCTCCCGTTAATTT
TTTCCTGCATTTCCACATTTCCAAAGAAGAACAGATAACTCAACATGGAGGCCATTACCT
TTTAACATTCGAATTTGGAGTACTATGATTACTTGGTCCTCACCATCTTAGATTTAATTT
GCATTATTAGATGGATTTATGTTGCTGCAAGTAACTTCAGCTTCCAGGTTATTTTTTAAC
ACGTCTCACAATTCTCTCATAACAGGAGAACACTTGTTCCTATGATCGAAGATCGATCCC
TCTGCCCCTCACACCCGACGTTTCTCAGAATTGAATAAACTTCACAATCTTCTATGTACT
TAACATTTGTGCAGAATCTGTATTATGCGAAGCTGATGGCAGAGATAACAAAGATGGAGG
AGGCGCACGGGAAAGGGGTGGAGGTGGCAACGGTGGTACCGTCCATGACATTGTCTTAAT
AGCGAATATCATTGATACCCTATTGATAAATCTATGAAGGGATAGTGTAAGAACAATTAG
TTTTCATATTATTTTTTCTGAATTCCTTGACACGTAGCCCTTCCCTTGCTTGGTTCTATC
ATTAGCCCTAATTTATTGGTTCTCTTTCCTTTTATGTGATTTCCTAAAACTGTGACGAGG
AAGTGTGCATGAACACAACTTTCATGGTTTACAATTCTTTGCTACACGTTGCTTCCTTAT
GGTTTGATAGTACATAGCACCCCAGTGTAGGCTTAGTAACCATATATTACTCTTCAATGA
AATGTTCTTGCGGATAAACTGAAGAACTCGACCAAAGATGCTATACACTTGAAGTTATCC
AACCACATTTTGCACATCCCAAGATTGGATAGGCGGGGTGATCCTTGCATAGAATTTACA
AACATTTTGATGTTGCTAGATTTCATATAGCATATTTATATTGAACAAGTTTATTTGTAG
AGCCTCACAGAATGCATATTCCTATAGCCATGATTGAGAATGTACTTATGTTGCCTCTTT
ATTCATTACAAGTGTTTTCTTAGTTATATCTGCAATTGTCAATCGACCTATTCCTATGGC
CATGATTGAGAATATACTTATGTTGCCTCTTTATTCATTACAAGTGTTTTCTTAGTTATA
TCTGCAATTGTCCATCGACCTCCTGCTCTTCTCTCATAAGGCCCCTCAAAGTTAATCTCA
GTCTTGCAGTTACGGTACAAAGGAAGCCATCATCCAGAAGCTGATGGCAACAATAATGGT
GGTGGTGTCCCGCAAAGTGAACAATAATTGTGTATTCATGTTTACAGCCTTACACATAGC
ATGGGAACTCTCTGCGCATTCATGTATACATGGCAATAGTAATTGTGTGTAAGGGTGCTC
GGGTCATTTTCTTTCCACGAAGACATAGGATTCATCTCCCATTGACCATGCAGAAATAGG
ATTCATATCCTATTTCTGTTTATTCTCGCTAGCAAATACCATCAATCTGATTTGTTAACC
TACATTCATTTTTGTAGGTTTTAGTGTATTCAAGGTGGACATTTGGTGATTATAATATTT
TTTGTGCATTATTAGTGTGTAATGTTTTAACCTTTTCCTGTTAGATCGCTTTGTTTGGGC
CCTCACACTCCTCCTATTGATCTGCAGTGCCACTGAGCGATCCAAGACCCCCAACATCCC
TCAACAAGACACCCAAATCTAGGACAGGTGTAATTCTTTCCAATTACATACAAATTTTGT
TTGACTTGTGTGGGTTAACTAATGAGGGAACTATGTGTGATGACTACTTCTGAATATCAG
TTTTGGAGAATTACACAAGAATTTTTCATGATTTAACATGTCCTCTATTTCATCAATTGC
ATATGTGAATTATGTGAAACAGTATGTGAAATCCAATTTGGCTTGCGGGAGCATTTGCTC
CTACCTGTGAAAAACAATTTTGGAAATGTCAAAAAAATTCCAACAAAAAATGTATGCATT
TATAGTCACATTCTAATACTACCTGCATTTTTTGGCAAAAAAGCTAAATATTTTGACCTG
TGCAAAAATAACAAATTTGAATATCAAATGTTACCCCGAAATGTCACCCAAATTTGTTAT
TTTCACTGATGAAACATTATTGTGCCGTTCTGTAGAAAAATTGTCAAGCATGCTTTTCAC
ACTAACACGGACATGCAAAAAAATCAGTTTTTTTTAAATAGTTTACCACTTTTTTGCGGT
ACTATTCATCCGGGAGCGTATGCTCCCGGGAGCCAAAACACCCCTCCCCTATATATGTTA
TGAACATATAAATGTGATATCACTGTAGTCGAAGAACTAAGCCTGGTTGATGTCAAATGT
GATGCACATAAGGATTTATGCATTATTTGTAATCATGTATGTAAATTATGTGTCACGTCC
AAGATGCGACCCNNNCCTCAATTTGGCATGAGGGCCTCGCCAGGGATAGAANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTACATGTACTAAAAAGATGAGATTTAAAT
AGAATTGGGTTACACTCGCCACACGCTACA