morexGenes - Barley RNA-seq Database

Contig contig_133527

Source Contig contig_133527

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_133527 (6664 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location

Predicted Genes from contig_133527

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_3794	1	697 bp	MLOC_3794.1	Available	Available	None
MLOC_3793	5	2074 bp	MLOC_3793.2	Available	Available	LOC_Os11g24510.1, FRAME:+3, EVALUE:0.0, 13111.m02333 protein OsSCP56 - Putative Serine Carboxypeptidase homologue, expressed

CDS Structure of MLOC_3794

CDS Structure of MLOC_3793

Contig Sequence (6664 bp)

>contig_133527 6664 assembly3_WGSMorex_rbca.fasta
ATACTCATCTTTTCACTACATGTACTTGTAACGATATCCATTTCTGCGAAACGACGAGAT
GCGTTTCTATCCCGGTCGAGGCCCTNNNNNNNAAATAAGGATAGGGTCGCATCTTGAGCG
TTACAAATTATCTCTATTGGTTTTCATTAGAGCAATAAAGTCAAGTTTGTGCTCTAGAGA
CGCTTCTGCGGGGAACCTTTTTTCAACCAAGTCTGCTAGACCTCTGCTATTTTAAAAGAT
TCCTCTTTAACTTTCACCATAGAATTTCTTAGTTGTTTTAAACCTCACGCTTCTGCAAAC
CGCAGATACAAGATAGACCTTTCTCTTTCAGGTTTTTTTTTTTTGATTTATCCTGACCAG
CCTGTCGGTCCATATAACCGGTCTCGGGATCAACGCTATCTTCTGAACTTTTCGGGGCCA
CATACCCCTCCAAGCCAATTAAGCCAGATATACTTTGTAAAGCAATTGGTTGCCACGAAC
AGTAACTGGCAATCCAGATGAGGACTATGGGATCCAAGCATCTGACCATATATTTATTTC
TGTCCATCTTACCCCTTCCAAAATATGTCCAACCTTGAGAGTATTCACACCTTGTCGAGC
CCAAACCCCAAGTATTTATCATTCAAGAATTATGTCATAATATCAAGAGTTGCGCAAACT
TGAGTGTGCTTGGACTGAAGAAGATGCTGGGTTTCTCAACCCGAGGGAGGCGTGGGATTC
AGCGAGCTGACGTGCTGAATTTCGGCGATTGGATTCGTTTCCAAGCGGCGGATGTTGCCA
GTCGTCCTGCCGTGACACGCCTGGATAAGACACGTGTGGTAGGGCAGTTGAGACCGGCAG
AAAAACATCACCTCTTGACACTAGACAGCTCCGGCCAAAATTAGGCCAGCAGCTGATCCG
GTGCCCGTGCTCTGCTGCCGCTCTCCGGTCCGAGGACGAGTACGGAGATGATCCCGACGC
GGCTGCTCTGCTGCTGCTACTTGCTGTCGCTCATCGCCGTCGCCCCGCGCGCGATCGACT
CCAAGCTGGTGACCAGCCTCCCCGGCTTCGACGGCCGCCTCCCCTTCCGCCTCCACACCG
GGTGTGTACCCTCGCCCCCATCTCATCAATCACCGTCGGTTCTTAATTAAATCGGCATGT
CCATGAATGAATTGAACCGAATTGAATTGTAAGGTACGTGGAGGTGGACCAGGGCACGGA
GCTCTTCTACTACTTCGTCCAGTCGGAGGCCCGCGGCGAGGGGGACCCTTTCCTCCTCTG
GCTCACCGGCGGCGACCGCTGCTCCTCCTTCAGCGGCCTCGCCTACGAGATCGGTCTCTC
TTTCCATTCAACCAACCAGCGTTACTCCCCCGCAAAAAAAAAAAAAAAAAAGTATTACTG
ATTGCTGGGTTGTCTCTCAGTCTGCAACATGATCATATTATATATATCGCTCATGTATAG
TGCAGGTCCCATCAGGTTCGTCCTGGAGCCCTACAATGGCAGCTTACCACGCCTGCACAT
CAACCCAAACTCATGGACAAAGGTCTTCCTAGCTAGCTTCTTGTTACATCTCAAGCAGCT
TGCTACCTGAAATATGTATGTGCGCATGCTACTTAGTACTTACACGCTAACACTAAGGGA
ATGTCCACCCGCGCAGGTGGCACACATCCTGTTTGTCGATTCACCGGTCGGTGCTGGATT
TTCATTTTCCAAGCAACCCGAAGGGTACGAGGTCGGGGACGTGTCCTCCTCGTTGCAGCT
CCATGACTTCCTCATCAAGTGGTTCAGCGACCACCCCGAATACCTGAAAAATCCTTTCTA
TCTCGGTGGAGATTCCTATGCCGGAAAACTTGTGCCATATATCGCGCATATCATTTCACA
AGGTACATAAATATATACCATGTGCCATGTTTAATTGGCAACTCCATCTGTGTCAATCTG
TGTGCAAACTAGTTTTTTTTTTTTTGAGGACACCTCAAGAGTGGTAGGGGGTTCGTTCAT
TTCATTAAGAAAAAAAAATTGGTCTAGTTTATAAGGAAAACCGGATCTGAAAACCCAACA
TTCTCGGCTAATCAGGTAAAACCAAATGAAAACCCCAAACAAAAGGAAAAAAGAAAGCGA
AAAAATGAGGCACTAGAACTTAGGGATAGGGACAAACTAGTAGTATAAGCTCTATTTGAA
CTGTATATGAATTGTTTTCATACAATATAAGCTCTATTTGAACTGTATATGAATTCATGC
TCACCAGCTTCCCTCTTCAGGTATTGAAGCAGGAAATAGTCCCCGCATTAATCTTAAGGT
ACCATGATGGCATAATCATTACTAGTTGTTTTAGCGATAACAATTATTATATATGTATGT
CTGTTGATTTCAGGGATATCTAGTAGGTAACCCATCGACCGGTGAAAGCATTGATCTAAG
CTCTAAAGTGCCATTTGCTCACGGAGTTGGCATAATATCAGATCAGTTATATGAGGTAGC
TACACTCGAGCCTCCTTGCAGCCGTGTATATAGTCAATTTTATCGCAATCAAGGTGGACA
TTAATATGTTCTTTACTGATAATATATGTAGACCATATTGGGGCATTGCCAAGGACAGGA
CTACATGTTTCCGGCAAATGATTTGTGCGCCCAAGCTCTGGATGATCTCAATCATGTAAG
AAGAAGAAAGAAACATCTTAATGCTAGAATTGATTTGACCGTTCGCCGTGCAATTTTTGC
AGCTTTTGTCCGAAGTTCAGCAGGCCCAAATTTTGTTGGACACCTGCATTTTTGCGTCCG
CTCCATCCCGACCAGAAGCTGATAGCGGGACTGAGTACTCTGGTGGTGCTGGTAGGAGGA
TCCTAGTTGGAAATCCGCCACCTCGCCCTCCATTTGAATGTGTCGTAAGTAGTAATATCT
CCATTCTTCATGTAGTACAATGCGAGTTCGATAGTTTCCATCGCTTTTAACCATTTATTA
GTACTTAGCCGAGAAAAAAAGGAGCTCATTAGTACTCCCTCCGATCCTTTTTACTTTGCA
TATAAAATTGTTTGTCTGAAGTCAAACTTCGTAAAGTTTGACCATATTCATATGAAAAAT
ATCGACATCTATAATACTAAAATTATACAATATGAAATTTAAATTCTTGACGCATCTAAT
GACATTGATTTCGTATTGTGAATGTTAATATTTTCCCTATATAAAGTTGGTCAAATTTTA
CGAAGTTTGGCTTTATAAAAAATCTTATATGCAGAGCAAAAACCCACCGAGGGCGTACTG
TATGTAGGGCCAACTAACCAATATTGTGGCAGACTTATGGGTACTCCCCATCATGTTTTT
CCAGCACTTTTAATAACTTATAAGTACTTAGTCGAGAATAAAAGTAACTTATTAGTGCTA
TATACATACCAATGTTGTGGCAGACTTATAGGTACTACCTATCGTATTTCTGGGCAAACG
CGGAGGCGACCCGAAATGCTCTTGGGATCAAGAAGGGGAGCGTGGATGAGTGGGTGAGGT
GCCACAACGCCGATCTTCCCTACACAATCGACCTCAGGAGCAGCATTGAGTACCACCGCA
ATGTCACGGCCAATGGCGGCTACCGTGCGCTTGTATACAGCGGCGACCATGACGCATTGG
TGCCGCACCTGGGGACACAGGCGTGGATCAGGTCACTTGGCTTCCCCGTCGCCCACCATT
GGAGGGCATGGCATCTCCATGGCCAGTCTGCTGGGTACCCACACACCATCGTTGCTCGCT
ACTGCTACTCCTTTTCATGCTTAATTACTCTATATTCTTGTTGATGCATGCGTTTCTTGC
AGCTTCACCTTAACCTACTCCAACAACATGACATTCGCAACCATCAAGGTAACACTTGCA
CTCTTAATTTCCCTAGGCGTGTTCGTGCTCGATGCACAAGATGGCTATGATCAAGCTCCA
TTTCGTTGCTGCAGGGTGGCGGGCACACCGCGCCAGAGTACGAGCCCGAGAGGTGCTTCG
CCATGTTCAGCCGATGGATACTCGAAAAACCACTCTAGTAGACGTAACAGCAACGACCAG
CTGCCTCACACCGAGGGGCATCGCCGATGCCGATCTGGATTGAGGCGCCAGATCCGTCAG
CTTGGCATGCGGCGGAGAAGGCTGGATCTGGCCTTGGGGCCGGGAAGTAGGGCGGCCGAC
CCCTATCGGGGGCTCGCATCGCCATCCATTCGCGAGAGCTATCTCACACACTCGTGCACA
ATTCCCATATATAGTCTTAGCTTTAAATGTGGTGTAACCTTGACTTGGCAATGGGCCTGT
TTGGGACTACACTACATAAAATTCAGTTTCGTTTCGTCAAATTCATTTTGAAACAATTTC
ATATAAAAGTTGTAACTCTTTTAAAGAGAGAGTTTGGATTCCATCCAGCACCAGCTTTAA
GAATGAGAAATTTGGTGGATCAGATATAAGATGAGTGAGGAGGAACGAGCGGGGTCTATT
TACTGATGACAGTGGTGGATAATTTCTTGTCAATTCTAGCTTCTATATTTTTTGAAACAC
CTCCTAAAGAGCTTTACAGAAAACATAAACTTGTACACCAGATTCTAGGTTTTTATGCTT
TACAGAAAACATAAACTTGTACACCAGATTCTAGGTTTTTATGGAGTGAAGCTATCCTGT
TTGGTTTACGTTTTTAGAACAAAGCTGAATTTTAAGAAGCAGAGTAGTCCCGATGTTTTA
TGGAACTCCTACGTTCACCGTTTCGTATGGATCCAACACCAAAGCCTACGAAATCCATAT
GCTTCCACAATCTCATGTTTTGCGCATACAATCATATTAAGTTTTGCACATAGAGTCCTC
TTATGTTCCCGTGTTTGTTTCTATCCCTACTTTTTCGGAATCCTACATATCAAAAAGGCC
TTTAATCTTGCCCACTATTTTTCCATCCATGAGACAAAAACACAGGATGCATTCCATTCA
TGGGAGATATTAGGGTCACTCAAAAGACTTCTAATATAATGTTTAGAGGATTATAATCCC
TAGGGACTTCTCGTATGTCAGTCATTTGATTTAGTTTGTAGCATTGAATTAAAATTTGCG
AAGGATCCATTTGTACTATAATCAGTAGGAATTTATCATAAACTCAATCCTCTTGAAAGA
AAGAAAAAACCCTTTGAGTCCCTGTGATGCAAGATTTTCATGGACATCACATTGCAATCC
TATGTATTTTCTATTCATGCATTTCTAATGAAGGAAAGAAGCTCTTACCGCTTGAATCGA
ACTTCAAAGCAGTCTACTTTTAAAAAAAAATCTGGAATTGTTCGACCCATTATAAGTGTT
GTGAACCTGCGTAGCAAGGCTCGAACGATAGAGCTGTTAAGGGCATGTTCAATGCATAGC
CTCAGAATGATGTCTGTATGCCATATAAGATCGGATATAGGTTTGGATGATGTTAGAGGA
TCCTCAATAGGAGGCAGGTGCTTGGGGAGAAGAAGTGTAGCCCAATACAAAAAGCTAAAA
AGTTAAAATGAAAAATAGAGATGTATGTATACAAGAATCGTTATTTTCTTTTTCTTGATG
AGACCCATTAGTGATAGCTTGCATTGGAGAATATTTTTTTTAATGTAGATGCCTTAACCT
ACTTTTTGTTATGGAGCATCTGTATTCATATGTCACTACTGTACATGGCCTAATCTATGT
AACACAAACAGACAGGGCAATACATGCTAAACAAGTTAAGAGAATGAATGTAACATTACC
AATAAAGACATAAATACAATGGCATGCAGCAGATGAGTGACCGAATATAAGCTAAACAAG
TTAAGAGGATGAATATAACATTACCAATAAAGACGTAAATACAATGCACCCAGCAGATGA
GTGATCAAATATAAGCTAAACAAGTTAAGAGGATGAATGTAACATTGTCAATAAAGACGC
AAATACAATGGCACGCAGCAGATGAGTGACCGAATATAAACGGAAGATCCAAGTATAGAA
GGAAGAAATGATCAAGGATAACCAGCCATCAACATCAGGCAAGCGAGCAGATAAGCGCTT
CGCTAACTAGCGTGGCACGGAGGAAGTGCATTGATCATAATACTACTTGAGGCCAAAGAG
ATAGTATCATAGTCGGTCGTCACTCGCATGTCAAAGTGCACTCTGACTGGACATCAACAA
TCCAGTTCCATGCTCCACAGCCATGCTGTCTATATCAGTCCTATCACCACATGGCTCCCA
AGTTCTCAGGCACCATTTTTCTTTTTTTCTTCTACTTGGAGTAAATCCAACACTGATGTG
TGCCTCACTATCTTGTGCTGATCCATAGATAGATAGAAGAAACAAAATGTAGCACAATGG
TCATGCACGATACTCCTACCACCATCATGATGGAGAATTTATATTGCAAAACACTCTCCA
ATCAGCACAACTTTATGGATAGGAACGATTTTGAAGTTCGGTCAGCAAGTTCAGTTACCT
TGAAAAAATGAATCAAACATGAAGAATGAGGGAACCAAAATAAACAGTTATTGATGGTTT
CATGAAAAATCCGGTTCCAATTAAGCATAGTTACAACTTCCTAGCATCCTGTCACGTAAA
ACCATTTCATTCATCCCTAGATAGCTGTATTTTGCCCTATGATTTGTCACATTGTCATCC
CATTCAGACATAGTGCAATGAAAATGACAAGAAAGCATATGACACATACTCCCTCCGTTC
CAAA