Contig Data
morexGenes
Links



Map Locations of contig_132722 (2999 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_132722

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_3692 3 1378 bp MLOC_3692.1 Available Available LOC_Os01g24600.1, FRAME:+3, EVALUE:2e-164, 13101.m02600 protein fruit bromelain precursor, putative, expressed





CDS Structure of MLOC_3692






Contig Sequence (2999 bp)

>contig_132722 2999 assembly3_WGSMorex_rbca.fasta
TTATCGCCTCAAGATTGACCATGTTCACACATGTGCGACAAGGTGAACGACCTAATGGTA
GAAAGAAGGATAACTATGAGACGGATGGGTTACCGTATTTAAGTGGATGAGGCAGATTCT
GTGTGCGGCGATGGATTTTGATGTTATTATTTTTCGTCCGGTGCAATCGTACGGGCATTT
GTACTAGTATATGACAAAACCAGTAGCTCGGATAAACTATATGAAAGAACTAATGGAGTA
GATGTAAACTTCACAACTATTATATTACAAAAGCTTAAAAAATACAGGACATAAACTTCA
TTTTCATACATCACACGTAACAACCTCCTGCAATGACTTCTTCTTGTGTGATGAAATCAA
CTGTTTTTTTTTTTCTATAACAGGAACGAGTCGCAAAAGAAACCCTATGATCGGACAACA
TATATGTAAATAATTTCCCTACACTTTACTCTAGTGACTACTGACCTCACCTGCTATGAT
CCCAAGTCTTCCTATGGAATTCCTCAAAGTGAAAGAAAGAACCTTCCGACGACGGCCGGA
TCGTGCATGCACACGCTCAACAACTGATGAGCCACCAGCCACAACGGCGACATGCTAACC
CACACGTCGAACAAGGGGCCTGCTCTATATAAACATGAGCTCCGGTGCATATGTATTCCA
CACAAGCATAGAGTCTAAGGCTCTAAGCTGGTAATCAAGATGGCTTCTTCCACGCCATAC
CTTGTCGTGCTCTTGTGCCTCACGAGCCTGCTGCAGGCATCGCTGACGGCGGCGAACCCG
TCATTTGAGCTGCCGGAATCCGAGGTGAGAAGCAGGTTTTCCAAGTGGATGACCAAGTAC
TCGAAGCACTACTCATGCCATGAGGAGGAGGAGAAGCGGTTCGGAATCTTCAAGCAGAAC
ACCAACTCCATCGGCGCTTTCGCCAGCCAGACTACGGTCAACGGCGGCGTGGGTGGGTTC
GGGCCTCAGACCATCACCACGGTCAGGGTGGGCATGAACAGGTTCGGCGACCTCAACCCC
AGCGAGGTCGTCGAGCAGTTCACCGGGTTCAACAACACCGGCTTCCGCACCCCGAAGCCC
TCACCCCTCCCCTACCACTCCTGGAAGCCTTGCTGCGTCGACTGGCGCTCCAGCGGCGCC
GTCACCGGCATCAAGTTTCAAGGCTCTTGCTGTAAGTAAACTCAAGCTAGATGTATCATA
TATATAGAGACGCTCCTACAGCTCTGCTGCTACGTTTACTTATGATGTAGATGTACATGG
ATATATTTTATGGCAGTGTCGTGCTGGGCGTTCGCGGCCGTGGCGGCCATCGAAGGCATG
AACAAGATCAGGACCGGCGAGCTGGTGTCGCTCTCGGAGCAGCAGCTCGTGGACTGCGAC
ACCGGTAGCAGCGGCTGCAGCGGTGGGCGCTCCGACACGGCGCTCGGCCTCGCGGCAACC
CGCGGCGGCATCACGTCGGAGGCCAAGTACCCGTACAGCGGCATCCAGGGCACCTGCAAC
GTGGACAAGCTCTTGTTCGACAACCAGGCGTCCGTCAAGGGCTTCAAGGCCGTGCCTCCC
AACGACGAGCATCAGCTGGCGCTCGCCGTGGCGCGGCAGCCCGTGACGGTGTACATCGAC
GCCAGCGCGTGGGAGTTTCAGTTCTACACCGGTGGCATCTACCGCGGCCCTTGCTCCTCC
GATGCGTCGAGGGTGAACCACGCCGTCACCATCGTCGGCTACTGCGAAGGCCCCGGAGAG
GACAACAAGTACTGGATCGCCAAGAACTCGTGGAGCAACGACTGGGGTGACCAGGGCTAC
ATCTACCTCGCCAAGGACGTGCCGTGGAAGACGGGAACCTGCGGCCTCGCCACCTCGCCC
TTCTACCCAACGGCTTGACGACCCATGCCGGTTTGCCAGTGGAGCGTTTGCATTCGCCAG
CTTCTTATGTTGTTTTATTTTATTTGAGAGAGGCAAATTGCATACATAGGTCACCAAATG
ATTGATGGATGCGTGGTGTTATTTTTTTCGGCTGTGATAATGCATAATAAGATATTAATG
AAGTACAAAATCATTTGGCTCAAGCTGTTTTTCGCATTGCGGTGGATTATGTTAATCCCA
TCTACCCTCTCCAGTTTTTGTTAATTCAGTCTCTGATTCACCTGCTTTGGCCTAGTACTT
TTTAATAAGCCTAATAAAAAATTCAACAGCCGCAAACCGAGCCCAAAAGTAACAAACATC
TTAAAATCGATATGGCAAACATAACATAAGGCGCCAACTCAGGCGATTAACATTTGGGAA
GACCATTGGGCTCCTGGCAGTCCATCTCGTATGGTCCAAACACCAAGAGGAAACACCTTG
TTGCAAACTGTTAATGAATTAATTGACCCGAATACAGGAAAGTGGGATGAATTTCTTTTG
AGAGATGTTTTCTCTTCAATTGACGTGCACAGAATTCTTAGCATCCCCTTGAGCGTGCAC
CTTGATGAGGATTTTATAGCATGGCACTTCACAAAATCATATATATTTTCAGTGCGTTTG
ACATACTGCATAGAATGTGATCATTCACATAGACACAAACTCACTCGGGCAGATGGCCAA
GTACCACCTGAGCGTAACCCAGTGTGGGAAAACCTTTGGAAATTGCAAGTGCCGAGTACA
TTTAAGATTTTCGGATGGAAAGCCCTACATAGTATATGATCCCAGGATTGGCAATTCTTG
CGAACAGACATGTCCCAACGACTTCACAGCGTTCAGTTTGTGAGAGTGGTGCAAAAGATA
TAAAACATCTCATATTCGCGTGGAGTCGATCAAGAAATGTATCGCATAGTTTGGGACTCT
TAGATTACATTGATGAGTTAACGCCTGTAGATAGGTCGATCGCCAGCTATTGGTAATGTT
GGTCTCAAGGAATTAACTCTTGTGGGAGCATGGTATATATGGTGGTAGAGAAGGGATGGT
AGAGGCTAGGGTTCTACCAGGTCTCGGACGTAGGTTGTAGGGGTGGAAGTGCGGGCTGC