Contig Data
morexGenes
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Map Locations of contig_132700 (5973 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_132700

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_3688 2 967 bp MLOC_3688.2 Available Available LOC_Os09g38540.1, FRAME:-1, EVALUE:3e-60, 13109.m03835 protein plastocyanin-like domain containing protein, putative, expressed
MLOC_3689 3 2821 bp AK363788 Available Available None





CDS Structure of MLOC_3688






CDS Structure of MLOC_3689






Contig Sequence (5973 bp)

>contig_132700 5973 assembly3_WGSMorex_rbca.fasta
TTTTTTTTTTTTTTTTTTTGCAGTGGTGTTGTTTTCTTTTGGGTTCTGACCTTTGGCCAT
GGTTCCTCTGATTTGGATCATCTTGATGAAGTGCAACTGCCGTGGTCATTCATGAGTACA
GTACATTCTACTGATACTCGAAATGCAGACGTGCATACATTACATGAGGAAAGCTAAGCT
AGGTAAATGTGCCCCAATTAGACTATATTAGAGACCATGTCCCGGTCAATTGCCGCAGAT
CATACTCTAGTAACTAGTAAAGGAGAAGAATGGCAGCAGCTCCTAGCGCGGCAGTGAGCG
TCGCTGGCGGCCACGCCCCTGCGGCGAAGGGGGAGGAGGAGGCGGCGGGGGCCGGCGGCG
GGTAGATCTGTGGTCCGATATCGGACCAGTGGACGGTGATGGCGACCTTCATGCCGGCCT
GGCAGAAGCCGTTGCCGCAGATGAAGAAGTAGCGACCGGGGCCCGGGAGCGGGATGAAGT
CCTTGCCGGAGGTCCAGTTGCCGGTGACCCCGGCCATGGTGCAGTTGTCGTACCCGGTCT
CGTTCACCGCGAACACGTTGTGCGTCCCCTTCTGGTACCTGAACGCTGCAAATCACGAGT
GGGTGAGTGAGTGAGGCGGCAGGGAAGCAGTAGATCTGGTGGAGCTGGAGGTTTTTACAG
ATGAGGTCGCCAGCGAAGAAGGTCTGGTTGGCGGACCAGCTGGAGTAGTTGATGTTTGGG
TTCCATCCGCGGTTGGCGCCCACGATGTGGTCCGTCGCGCCGGAGAACCCCACCGCGGCC
ACGGCCACGGCCAGCATCAGCGCCCTGGACGCCGCCATTGCGCAGCTCCGCTACAGAGAG
ACCGAGTGTGAGCAGAGGAGGAGAGTGCCGAGCAGAGTGAGCAGTGAAGGGGAAAGCGAG
CAGAGCAGCACGGGGGCAACAGTGGCATAAATTGCTCGCTCGTGCCATGCCAGGGCGCAC
TGATTGGTGGTCTCGTACTCTCGTGGTCATCCTGGCCCACTCCTGACCGGCGCAGGTCAG
GCTGCAAGTGGACGCGGGGTGCCCACTTAAAAGCCCACATAACCTATGTTCGTGAACACC
CACGGATAAAGCGATTGAATAAGTGGGATATGTGGGTTTGTCCCGCGACGCCCGCATCAA
GCCCATGTCCGTTTCACTTCCTTTAATCAGGCACGACGTGATGATGCATCGGGGACTAGG
ATACAATGTCGCGTAGTTCCATCATGGCCGCAGCGCCGCCTTCCACCTCCGCCTTAGTGC
CACTGTGGACGTCGTCGTCCAGCTTCGACATGGCCACCCTCGTCGTCCATCTCCGTCATG
GCTGTCCAAACTTTGCCATGGATACGGCAATGTCTCTGTCGTGGATCATGACGAAGTAAA
ATCCATAAAAAGGACAATAATTTCCAACATTTATAACTTCTGAATGAATCTCGTCCGAAT
TATTGGTCGCTGCAGCTCGTCTTCTCCCTGTTCATTCAGTTGCGTTCATCTATTGTAGCA
GATAATCTCCCCTACCCCCAACCAGCTCAAACAACTAGAGAGTGAAGACATGAGAGAAAA
TGGTCGATGCTATCGCGTATGAGGAGCAGCGGCGCAGGCGTGTGGTAAAGGAGCTGCACC
TACACCACCTCTATGCCGTTGTCAGGGAAGCCTTGCCGGCTAGATCGCGGGGCAAGTCTG
TGAAACGAAAGCAAGTGCAGGAGGACGCCCCGATCCGGCCGTGTCACGAGCCTCCTCAAG
CAGCCCAAGTATCTGGACGAGGTACAATAGATACCTGTAACTAGGAGTGTTGGTCGATCT
TTCTTTCTTTGATTCAGTTACGTGCTATGCATCAGTTACTAGCAGAAGCAATGTTTACTT
TCAGTAATATGTGGGATAGCCGCGAAACCCACTTACCCGTCTAAAATTATGCGGCAGATG
CGGGACTTCCACTTGTACGATGCGGCGGATGTGGTGCGTACACGGGCTTCCCACGGAGAG
TCCCACTTATCGCAGGAAACAGAGCAGCGAGTTTTCAGCAGATTCGTCAGAGATTTTTAG
TTTGAAACTTTGAATCCCTACGCGCCACGGCTATTCGCCGGCAAAATTTTGCCGGTGGGG
CAGTTTTCAAATAAAAAGAAAGTAGTCGTCGCCTTCTGTGCTACGCAACGTTGCATCCAC
ATGCCACAAATACCGGAGCAATTCCATGGTGATGCCGAAAGCGCACTATATGAGGGAGAG
ATACAACGATAGTAATGAAATGACAGTAAAGACAGTAGTAGACAGGTTGATGCGTAGAGC
TCTAGAGTCTAGAGCAAGAATATATCCTCGAAAACTCGACTACCATTATTCTGAAAAATA
TTCTCATACCGGTCCTCTTTACAAGTAGCAAGTCGGCTGAGCAGCACAAAAGAATTCCGG
TCATGAAATCAACTGAATTTTATATGCTGATTCATCAAATTCTGCCAAAACAGACAACTC
AATCACAGTGTATTGTATTCTACCCTCGATACTCCCAAGATTTATCACTAACATGTATCA
TCACTTGCCACCACAACAATAAACATAAATCATCGGTTCGTCATAAACTAATTCCAAAAT
GTAACTTCTCCTGAAAAAACTGAAAACAGTAACAACAGGGGCTGATCCCCACTTTCTTTC
ACCTTAATCATACAATTATCATCACCTCGACCGCGGAAAGCTCAAAACATATGCTATGCT
CTGTCTCTGTCTCTTCTTGCCTGCTGTGCCTCCGGCGTAGACTCTAATCGATCTTCACGG
ATGAGTAGATCATCCTCGTGAACCAGAAGCAGGCGCAGAAGCCGATGGTTCCGGTGAGCA
CGAAGAAGGAGAAGGAGGCGAGCAGCATGTACCCAAAGTAGAGGATGCCCGACACCAGCT
TGCTGATCTGCAGCTTGGTCCAGAAGTAGAACCCTGCGTACAGGAAGAGGTACAGCGCCG
ACGACCCTGAGGTCAGGTACGACCTCCACCACCAGTTGTAGTCCTCGCTGCACAGCTGGA
AGTAGCAGAGCACGATGGTGATCTCAGCGCAGGTGATGATGAGGATCACAAACACCAGGA
AGAGGAAGCCGAAGATGTAGTAGAACTGGTGCAGCCAGATCGAGGTGAGGATGAAGAAGA
GCTCGATGAAGACCGCGCCGAACGGCAGGATGCCACCGATCAGGATGGTGAAGAGCGGGT
TCATGTACCAGGCTTGCTCAGGGATCTGTCGCGGGATCTTGTTGGTCTTCACCGGAGGCT
CCATGGCAGGCTTCTTGAACCCGAGGTAGCTCCCGACAAACACAAGGGGCACTGAGATGC
CGAACCAGAGGAGGACCAGGGCAAACATGGTGGTGAATGGGACGGCACCAGATGACTTCT
CCCCCCATATAAGGGCATTCAAGATGAAGAAGATGACGAAAGCAATCCCTGGAAACAGGA
AAGCCGTGCGCAGGGTTATCTGCTTCCACTCTGCACCCTTGAACATCTTGTAGAGTCGTG
AAGAAGAATAGCCAGCAATCAACCCCATTAGGACCCAGACGAGAAGCATTGCAGTCATCA
ATCCTCCACGGTTCGATGGAGAGAGGAAACCCAGAACAGCAAAGATCATCGTAACCAGCA
GCATGCCAAAGAATTGGACTCCAGTGCCAACAAAGACGCAGAGCAAATCAGAGTTAACTG
GAGGGCGGAAAACGTCTCCATGGACAAGCTTCCAGCCAGTTTCCTCCTGTGCCTCCTCTT
GAGTTTCAAGCTGGTTGTACCTAGATATATCTCTGTACAGGGTGCGCATCATGATCATGG
CTACCATACCAGATAGGAAAAGCACGATCATGAGAGAGTTAACAATAGAGAACCAGTGAA
TCTGATCATCAGACATCAGCAAATAGGTGTCCCATCGAGATGCCCACTTAATTTCACTCT
CCTGCAAAAGTAACAAAACATTCCATCAAAATCATCATAAAGCAGATCTAAAATTGAAGG
TTAAGAAACTATCATGCCATAGGAGACAACAATAAACAAAACCAGTACCTCAAAGCGAAC
ATCATAGGTGAATACGATATCTTTGCCGACCTCAACCTCCTGAGGAGTTTCAGAATTTAT
TACAAACTTGCTGTTATGAGGATCACATGTGCTCAAACGAGTGTTTGCGTCATTCCAATT
CCCATCGTACTGATGCTTGATGCTGATGCAAACATATAAGACAGAACACAAAAATTAGGT
ACATTCCATTTACGTATGTGGCAAAAACTATTAACAACACAACAAGCGAAGTTGAAGGAA
AACCTGTATGGTTTGACCTCAAATCCCACTATCCTAGAAAGTTCTGAATCCTCATCCTTG
TGAAACTTAACCGAAAATGACAAATGGTTGTGGATAAAGTGCTTCTCATCCTTGCTCTGG
GAACATATTTGTATATGTGAATTCGTTAGTCCCGATCATACATGTTAAGACACGGGTAAG
CATGAACAAGCTATATGAACTTACTCCAGCGTACTGGCCCTTGACACCAACATGATATCC
ACCTTGGTAGGCGACAGTATTCCTATCTGGCCTTTGAACTGGAACAACCAGTGGCAGATT
GTCAAGAACCCTGCAAAGCAAACCATGTCACCTTGGAAAATTACCATGCCATCTAAAGCG
CAACAACACCATCACTATTGTCCTTACATGTTCACGCGGTATTCATCCTCGATCTTCTCC
TTGAGCTCCTTTGCTTCTTTCTCCGTGACAGTTATTTTGCAGATAATCTGGCACATCTTG
GGCTCTCTCATTTGGAACTGTAGTTCAGACAAGGAGGATGTTGAACTAAAAATTAGGCAC
ATTTCCTTCCCAGGTACATAAACCCCGATTAATCTTTATCCAATATACTTACCACATAAG
GGGAGTTCTCAATTCGATCACCACGGAGAACCTCACCAAGGTTTTCAGCACTGTCAACTA
TGGTATTCGGCTTGCAGAAAGGAAGGGAGTAATACGTGTAGGGGAGCTGAGTCTTTATTG
ATGTCAGCTTGTTCACCTTCACCAACAGTTCATCTTCCTGTAGACAGATAAATCAAGGAC
ATTTTTTAGCAGGAAAAAAGATGCTTTTTAAGGATAGCTGTTGGTAGAAATATGAGATAC
AGTCAGGCTATAAATAACGCGAAAAATATCTGGCCCAACCAGTACAATGTCAGATGAAGC
GGATCCGTTGCGTGACCATTTCACTCATCAGTTTGGTTTTGGAAACTATGTTTCAACCAT
TCCACACAACATTCTATAATGCTCTGCAGAGCATCTAGTTTCCTAGGAACATGTACAAAA
CCATAGTGTATCAAACAGGCATTTTTTTTTGAAGAGTACTATATAACATAAAAGATCCAA
ACAGAAAAACAATATCGCTGATAATCGGTGCATCCTTTTAATAAACAGTAATAATAAACA
TAAATAAAAAGCAAGTGCTTGCTTGCAGCACGTGCAATTACTGTGAATTGGGCATCTAAA
AACGATCAGATTTGTGCTTGGCTGAGAAGGATGCTTCACTCCAGTCAATCAGTTGATCGA
GCTCTAGCCGTGGATCAAGCTAAGACCAAGATGAGATCTAGATTGCCAGACGCGCCCGCT
TCCAATTATCAGCGCCTTAAAACCACCAACACTACAGGTGTGTCCAAGGGCACGCGTGTA
ACATAACTAACTGCGTCTGCGACCCAAGCACCATGAGTGAATCTATGGAGCACGTTCGGG
ATCAGAAGGGGGCGCGCGGGGAGGGAGGAGGCACCGCGCGAATCATGGCGATACCAACGG
TGCATGCGGATCCCGAGCTGACGCGCGTCCTAGCGAGCCCCTGGCTGTGATCGCTGCGAG
GGTAATTGGACTACCAACACTTGTGCGTACGATTCCGTCGTGAGATCCGCGGATCCCGGG
CGCCTACGCGCGGGGAGCCACCGCTCGTTGACCGGATCTAGCCGGCGAGCGCGGGCGCGG
GCTACGGATCCCCTCGGCCGGCCGGGACGGAGG