morexGenes - Barley RNA-seq Database

Contig contig_132235
Source Contig contig_132235
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_132235 (7308 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_132235

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_3639	1	150 bp	None	Available	Available	None
MLOC_3638	3	2350 bp	MLOC_3638.2	Available	Available	LOC_Os05g38120.1, FRAME:-3, EVALUE:0.0, 13105.m03984 protein homeodomain protein, putative, expressed
CDS Structure of MLOC_3639

CDS Structure of MLOC_3638

Contig Sequence (7308 bp)

>contig_132235 7308 assembly3_WGSMorex_rbca.fasta
CTCACTGCCTGACCATCTTCTGCTTGCTTATTTCGTTATATCCATTTGTTTCTTTTTACA
TTTTTTTTTCAATGTTCGTGCTACTTGAAGAGTCCCCACACATTGTTAAGCTTTAATTTA
TGAATTTCTTCTTGCATCGCTTGAATCCACTCAAGTTCCATGAAGGCTTCATCAACTTTT
NNNNNNNCTGTGATAGACACAAAGGAAGAGTGCACACAAAAGTTAATTAAATGTGAAATT
TTCCTATTGAGTGAGGGGACCTGGTGCATTGATGTCATCAAGGACTTTGTAAATTTGCAC
TTCATTTGCAATATTTGGATGCACAGGTTGAAGACTTTGAAAAGGTTGAGGAATTTGATC
AGGAGCAATTTCCTTAGGTGACAAGCCCGAATTTCTTCATTTTTTGGGATAACTTTTTCA
ATAGGTAGTGGTTCTTCTCTGGGAATGATGTCTTTAGTAGCCTTGAACCTAATGGATTCC
TGAGGAGGCATTTCATCTAGCACATGAGGCAGGTGCTCTCTTTGTGAGCCGTTAGTTTCA
TCGAACCGCACATGTACAGTTTCAGAGACGCACAGGAGGCATGATTACACTTTCAGAGAT
GCACCACTTCGTCGGAGCTTCATTCGTCAGGAACGGATCCACCGAGTGCGCGTGTCCCAA
CGGAAGGTGCCCGAGATGCACCACCGAGAACCGCCGCTTTCACCCGGTTCTCGTTGTCGG
GAACAGATTAGCTGGATGTGCTTGGCTTAGCGGGAGGCCCCCAGGCTGCACCACCAAGAC
CCTTCGTTTTCGCCGGAGCTCTCATCATCGGAAATGGATCCACTGGGTGCGCGATTCATA
GCACGAGAAGGCTGGTAACGACTGGATCTTGAGGCGGCATGCAGAGGAGGGCTCCAACGA
GATCTCGCCATCGTCCTCGGAAGTGGGGTAGAGCGTGAAGGGGCCATGACCGAGGTCAAC
CGACGCACGTCGGCGACCACAGAGAGAGAAAGAGGGAGGGAGAGAGAGAGAGAGAAGGAG
TAGGGATGAGAAAAGAGGTGGGTGGATGACATGTGGAATCCACGTTCCACCTCATCAAAG
TGTACACACAGACCTGCCACGTTGACCCAACACGTGGATCCCATGAGTCAGCTTTGTTGT
TTGTGTGAGCTAATATGTGTATCATTGTGATAGGTTACTCACTTGCCATGGAGGTGATGA
TTTTTGTTTTTTGACAAGAACGGTGGCAATTCGCTACCCTAACCTTAAATGTGATGGTTT
TAAGCAATTCACTTTAAATTTGAATTTTTTTTGTTATAAATTTTGCTAGATTCCAAATTA
AACTGTTTGAGGAGTGTCTATATAGCATTTGTACGCAGTTGAAAAGACATGGATATGACG
GAATGCTAATATATAAGCGTCAGTCTCCTAGTCTCCTGAGAAAGCAAAAAGAAATTGACA
ACAAAGGAACAAAGCAGCCAAACCGGCACACTCGATCGGTGTCCCATCACCTTTTCCCCT
AAAAATACACGGCATTTCAACAACCATTACGTACCACGAAACACGTTTGGGCCGGGATGC
TTAGAGCTCAAGCCGCGATGACGCGAGGTACGTAATACTACTACTAGTACGTGATTTCGA
TTTGACAATTGAGTTGCATGTGTGCTGGTTCTCTTTCACCTCAAGAACAAAGAAGCAGAG
AAAGGGAATATACGCCTCCGCATGCAGCACAGCCCAGCACGCCTTTGTTTCCATTCTCTC
AAACATACATAAAGGATGGAGCTGCGAGTTAAACTCCAGTTCCCCCTCCATGAGTGGCAA
TGATAACCCATACCCCTCCCGAGGCTCCCACCGGTCTTTTCCTACGACCAGCTTTATGCG
CATCCATTCCATGGAGGTAGTAGTAGCAAAAGGCAACGCATGACATTTCTTCAGTAGGCA
TGCAGAATCAGAGGCCAATAACATATCCATGCAGGCAGCGGCAGCAGCCAGCAGCAGCAT
GCACAGCCCATGATGAAGTAGCGCCTAGTAGTAGCCAGAAAAGAAAGGTTTAGCAGCCGC
AGCAGCAACAAACAGTGACCTTTTTAACCAAGAGCAGCGGTTACTTTTTGGCGAGAAGTA
GTAGTAGTGGTGGTGTTCTGGCCACTCACCAGTGACGTGCATGGACTCCATCCACGCAAA
AAAGAAGGCGCCCCAGCTGCTTCTACTGGGGTCCTCCCCTCCCCCCGCACCAGTCACCAA
AGGGTACGTCAAATCGGATGCCGCGAAACCGAGGGCCATGGCATGGAGAACCGGTCCCAG
GTAACATGGGCTTTTTAGTTTTTACCCTGGGCCTGGGTATCGGTGAAGCCAGAGAACAAC
TCATCTCCATCGTGGCGCTCCCCCCGTGAACCGGTGACTTGTTTAGCACATTGATCAGGG
AGCAAAACTAAGCCTTACAGTAGGCACAGATCAGCCCTAGCAGATATCGTTAGGGAAGCC
AGTGAGAGCTTAACAGATGGGCAGATACTACCATGCATGTCTTGTCCAGGCTTTAGGAGG
CTACTCCATCTAAGGATGCAAGAAGATGGTTCACTAAACACCCTCCACCACCTGATTTCT
TAGTTTAATACAGTACATTGGAAAGGCTAACTAGGCAAGATCAGAGAAGATAACGCTATC
CAGTAGTCCACAGTCATATTCTAGTGCTACAATCCACACTGGAGCTTCGCTTCGGCACTG
GCTGCATGCTGTAGAATCTTTAGATTACTATGAGTGACACACATACACACTTCCAACCTA
GCTGCCAAAAATTAATAAAACGGAGCACCCTTTATTTGCCACCGTGGGAGCACTCGCATA
TGCAATTCGATATGATCAATGGGGATACATGGTTAAGGCGGCTTAATCTAGGATCAGAAC
AAATAATAGGGAACTGCATGCTGCTACAACAGGCCTTTTAAAGGCAGTACATACATCGCT
ACGCATTGTGTGCATGCTCTCCGTAGCCCCACAGTGTCAAATGTTGACAGCATTCCAGGG
TCTACGCAAGAGGCATATATACCAATGCACCCTTTCCTCCTTCATCATCCTACTTCTAGT
ACAGTACATGTGGACCAGATCAGCATCATCTCATCTCATCTCATCTGCATGTTGCATGCC
GATGAGCCCCAGCAATCGGGAATCATCCGGTTCATCAGTCACCCAACAAAGTCATGGAGC
AGATGGCCGCCCATCTCCTTGGTGAAGTGCCGGTCCTGGCCTCCGAACGAGGCCGCCATC
GCGTAGGCGTCGCTGACGTCCTCCAGCCCGAAACGGTGCGCCAGGTTGAGCGGGAGCGCC
GCCGGGAGGGGCTCGGCGATGTAGGCCCGGTTGTTCTGGTGGAGGCCAAGGGTAAGGGAG
ACGCCGCCGCTGCTTCCGGCGCCGCCTTCGACCTGCTGATGGGGGTGTGACAGTGCCATG
CTGTGGTGGTGGTGGTGGTGGTGCGCGGCCAGCCCACCGCCGTTGTACGCGAAGCTCACC
TGTCCCGGCATGTCATGGGTCATCGGAGAGAGCTCGTTCTGGACGTGCCGATGGGCTTGG
TGGTTGCCTCCGCGGTTCTGTGTCATGCCGCTGCTGCTTTGCCCGGCTTGCTGCGAGTTT
GAAGGATCGGAAGGCCTCCCGCTGCTGTCCGGCGAGTGCTGTTGCATTTGCTGCTGCGCG
CTGCCGAGCTGATTCTTGTCGGCGCCCGAGCTCTTATGCCCCTGCCGCATCTCCAGGTTG
TGGATTTCTTCCACCATTGGCTTCCAGAGTCTAACCCTTGCGTTGATGAACCAGTTTGAG
ACCTGCCCACCATGAAATGTTTTCAAGATTATCAGGCCGGCAATGTTTTCAAAGATCTAT
AACCTTTTAGTTTATAAACTACAGTAGTATATGCATGGTGCTAACTGCTAACAGACCTTG
CTAGCAGCCAACATGGCCTGATCAGTTAAAATATGAAGTACTACAAGTAGAAAACTAGCG
ACATGAAATGGTTACTTGCCTGATTCCTCGTTAAGCCTGTCTGTTTAGCCAACATTTGCT
TGTCGCTATCAGTTGGATACCTGGAAACCACCAAACATTAGAGTGATGGCAAATACAGAA
CCATTCTGGTAGAGAGAAACACAAATAAATACTAGTCATCTTTACAAGTTAGAAACTTCA
AAACCAAAAAAAACTGGATGTCGTTTCGAAGCTACATTATTACGCCATTTAGACCTAAAT
GCTAGCATGTCATTCTGTGTTACCTCGTGGCTAGCCATTTAGGAGCTTATGTCAAAAAAC
TAGTCCTTCACAACAATGCATTATTTAGTTAAAAAGTTGAAGATAAGTCACATTGTAAAC
TAAGTAACTCACTCAAACGATCGTTTGATGAGCATATGTGTAGAAGGCTAGAAGTTGAAT
GAAATATAAACAAATAATTTTTTCATATATTGCATGCTGCTAGTAACTCAATATACACAC
GAAGCAAATAGGCATGGATGCATCCTATTTGACATGTTTATGTTTTTTTTCGGAAAAATA
TAATACCTCCATCCCAAAAAAAGTGTTGCTGATTTAGTACAAAATTAGTACAAAGTTGTA
CTGAATCAACGACATTTATTTCAGAATGGAGGGAGTATATGTTATTTGCAGAGCAGTCTC
TATCAAATCATAAAATCAACAAGAATTGACCACCACTAACAAAAGCGGCAGATATTGTGA
CATCCTTGTTAGATTTGTTGTCTAGCCTAAGTTAGATGCACATAGAGCCCACTGTTAAGT
TGGTGCACTATCGTCAGAAACTAAATTTCAAGCGGGACCCATGCAAATACCCAGAAAGAC
ATGCATTTAATGGTAGTTGAAAGTTCTTCTCATCAGACGACATCGAATCAACACTCGACA
CAGATTTGGTGTTACGGAAGGATTTCCCCCACTTCTACAAATTCCTTTTTTCCTGTTGGA
TTGCATGCACTAAAACAGTGGCGAGTGGATGCCCACGAAAATAAGATGAGAAGCTTTCAG
TAAAGCAAACGATTTGAAGCCATAGGTTTGCACACTATCTTAGGCATTTATCCGATGTGT
CCCGGATCTATGCATGATGCTCACACTAGAAGGAATCGTTTGTTAGTTGCACTTGCAGCA
TATCATAATGGCATGTCATGTCACTGCTGCCCCATGGATATAAGCATTCGCATTTGACAG
TCGCAGGTACAGTGAAGATACTAGTAACGTGATAATTTTAGAAGCTGCATGCCATGAACA
CAAAATCAAATGTGTTGGATGGATGTCATATACTCACGGATGCAAGAAGTGCTCGAACAG
CCAGGCGCGAAGAACCGACACCGCGCGCTCTGGAAGTCCCCTCTGTGGCCGCCAGATGTT
GTGAGGCTGGCTGAAAGCGTTGGCGTTGCCTCCCCTCATGAGGGCGGCGCCGCCGCCCAT
GAGCCCGAAGGCCATATCTTCCTTGCCGAGGCTGTCTTTCCCGGCGGCCGCCTTGCTCGT
GTTGCGCAGCTGGTTCTGTATCGTGCTCTTCAGGTACTTGAAATGCTTGGACATCGTCCG
GAGAGCGATGGAGGCGAAGGGGGCGGCGTTGCTCAGTCCGGCAACCGTCTCGAACGAGGT
GATCACGGCTTGGAGCTGCTGGTAGTATTGCCTGTATCGCTTGCAAACCTACAAGATCGT
AGTAGTTGTATTAGAACACAACAATAAGTGGGGATGTATTAGTTGTTTGCACCCAATAAA
CACCTACAATCTTGGTAAAAAGTTGTAGAGAGACGAGCTGTTTGAAAGAAACAGATTATC
GTGTGTAGCTGCGTACACGCTAGTACCAGATCATGTGTCACTTCCAAATTATTGACCTAG
ATATGATTATATGGAACAACTTCCCTGGGCTAAATTAAACCAGTGTTGTACTACGCTTTT
ATGAAGAAAAAACAAGAATCTGGGGCTCTATGGACAGCAGAATCTTACAGCTTTACATCC
ATGAGTATACAACCATACTGAAAGAGGACAAACTCTAGGAATCTTAGAAAGCAGCAACTT
GAATTATTTTTTTATGAAATAAAATTAGAGCACACTGTGGAATTTGGCTGTTCTAATTTT
ATGTTCATGAACTACTGGCCTGTGTGAAACTCTTTGATCATAGACTCCAGATCAAGTTGC
TGCTAGTTTACAGGAAGACCAGAAGAAAGCAACTATTCAACACCAGCAGTACACACCAAT
AAGTGAGGCATATAATAAGCAAAGAAATATATCCAAAAGAGTAGATATGATGATCCATAC
ATATCAACCACCATCAAATCGAAAGCACAAGAAATAAGCTGTGGAACCACAGTGAACAAA
GATTCACAGGCTGCATCCCTGATGTGACCATGAGATGTTGGTTAGATTCTCTTCCACGAA
GAAGAAATAATTACTGACAACATGGGAACGGAAGAGAAAGATGCATGCTCATATGTGAAA
ATACATACAAGAAGAGAAGAATGTAATTTAGAGGCCACATATGATTGGAAGAGAAGAGAA
GATTCTCTTCCACGAAGAAGAAATAACTCACTTCTTCCATGAGGGAGATGAGCCTGGTCT
TCCTCCACTGCTGCTCGGCGCCGGAGACGGTGCCGCCCTCAGCGGCAGCGCGGTCGCTGC
TGTCCATCTCGTGGCCGCCCTCGGCGGCGGCGTCCATGGCATCCAAGTCGAGCAAGCCGT
CGTCGGAGCAGCGGTCCAGCTGCGAGGGCCGGCCGCCGACGTCGCAGATCTCCTCTAGCA
GCTTCTGTGCGGGGCCCAGGAACCTGGAGCGGCCGAGCACGGCTGCGTAGCCCGTGAAGG
GGCCGTACGGCCCGGTGGCACCGGCGAGGTGCCTCCGCTGCTGAGGCGGAGGGTTGGAGG
ACGAGGAGGAGAGCGAGAGCGCGAAGTTCTGGCTCGGGATCTGGGCTCCCACGGGCATCC
CGTGGGCCAGGAGCTGGTTGTGCGCGTGCGCGTGCGCCAGCGTGGGGCTGTGCGGCGAGT
AGGAGGAGGAGGAGGAGGCGTAGGAGTAGAAGGGCACCGTGGGCGGCGGCCAGGCGCCCG
GCGTGGGCGGTGACGAGTCCGCGGGGTCCGGCGGGAACCGCAGCTTGTCGCGCCGGCTGT
GCTGCGGCACGTGGTAGAGCTGCCCCGCAGCGGCCTGGCCAAGCAGCAGCTGGTGCTGGT
GCTGGTGCTGGTGCTGGTGGTCGGCGCCGCCCCCGTACCCGCCAGCGGCCGATGACATGG
CGGCGGCGCGGCTACGTGAGTGAGCACGTACGTAAGCTCGCCCCGCCTCGGAGGCCGCGC
CACGCAGGTGGCTCAAGCGAGCCGCCCTCTGCAGCGCGCGCGCAGTGG