morexGenes - Barley RNA-seq Database

Contig contig_131582
Source Contig contig_131582
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_131582 (5904 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_131582

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_3545	9	2942 bp	MLOC_3545.4	Available	Available	LOC_Os07g32390.1, FRAME:+3, EVALUE:0.0, 13107.m03279 protein targeting protein-related, putative, expressed
CDS Structure of MLOC_3545

Contig Sequence (5904 bp)

>contig_131582 5904 assembly3_WGSMorex_rbca.fasta
CGACGGAGGAGCGACGACGACGGCGTTAGGCCCCACTGCATGTACCAGCGGGTGGCGCGC
TTCCGCGCGACGTCGGATCTGACACGACGAGCCCTCTTGGGGTCGTCGTTGCCATGACCA
CCGGAATTGGCCATCTTCGACGGTGAAGGCGTGCCGCGGCGGATCTGAGGCGCCGGCGGT
GAGGTGTGGGGATTTTTCGCGGCAACGGAAGGATAGGGTTTGGACCCGTATTCAGCGCCT
GAAACAATAGATATAGTGATCGAGGGGTCGCGTTTATGGGACACCGAAAAAAATTACAGA
TCAGACCCCGTTTATAGTATCTATTCTGATAGTAAAACGGTCTAAACCCGTATAACCGAT
GAAATTTTTATAGTTCTAACGATTATACGGATGTGCTAGAAATGGTCTAAGAGATCCTTC
GAAAGGATCCTAACCCGTCTGACCATTAATCTGAGTGGCGCTCCCAGCGGCGCCCCAAAA
ATAGCCGTTGGGCACGCAGCGCCGAGATAGATCTCTCTCCACAGCGCCCACCCACCCCAG
TCCTCTCCTCCGTTAAGACTTTGTTGTCCCCTTTGGCAATCGGCGAACACTTCAAATCTC
CCCGACCGTTGGGCTCAACGTTCTTCTCCATCCCACCTCCCCTCGATCCACCCGATCCCC
TTGCCTTGCCTTTCCTTCTTCTCCCCGCTTCCAATCTAAACCATACATCACACACCACCA
CATCCGAAGAGAGAAACACAGAGAGAGGAAAACCCTATCTCGCGCGCTCCTAACCCTAGA
ATTCCGCCCTTCCATGGCGGCGGAGACCAAACCCTCCTCCGGGACGGAGGAGGCGGCGGC
GGCCGTGCAGTTCCAGGTGGATGAGGCGTACGAGTACCGCGCGCCCAAGTACTTCGACTT
CGTCGTCGACGAGACGGAGGACGACATCCGCGCCGCCGAGCGCTGGTTCCAGGCCGGCGC
CAGCCACGCGCCCTCGCGTAGGCACCCTGCCCTCCCCGCGGCTTCTCTCCCGGAAATTTT
CCCTGACCTGTCCCTCTCTCCTTCTTGCGCGCAGCGTTCGCTCCGAGGATCAAGGAGTCG
AGAGCGGAGGTCAAGATCGACGCACTCTGCGATTTCGCGGACGCGGAGGACCCGGCTCCA
TCTCCAAAGGTAACGAAAATGGAAGGAGAATGCCTCGATTTTGCTCTGATTTATATTGGG
TCGGGTTTTTTTTGTGTTCCCCCTTCTCATCATCCGATTTGTGTCGGTGTTTGCGGCCGT
AGAACCAAGCCATGGAGGAGGCAGCAGTCAACCTCACAAATCAGGCAGGGGATGTCGCTG
GGTAAGCGCTGGGGTGATTCTGTTTCTTCTAGAATTTAAATACCACTCGTTGTGATTGCC
AGATAATTGTCTTCTGTGACACCAGGAAAAAAAAATCCCTATTTGGACCTCGTATTTCTC
CTTGTGTGTTTGGCATACTTGCCCTCATACCATGTTTGCCTGACTTGATTCATTTGGTCA
GCACGCCTGCTTGTCCTGACGCCATGTCAGAGTCGCCGCCAACAGAAGACAAGGAGGAGT
CACCCAAGCCTTTCGAGTTTCCCGTGTCCAAAGATTTGGCTGCAAAATGTGAGTCACTAA
CTAGTACTAGTATTTTTTGGACGAATGCCGGCTGGCAAATGATTTGATTCCTCAATTCTG
ATATCGACATTGCTGTGGTTTTAGCAGCAGATGTTGGGTCTATCACGCCTAATATTCAGA
GGCCGCCTCCACCTGCCGAAGTTACCACTGCTAGGACCACTCGTGCCAAGTCAACAGTGA
AGGCTGAAGCGTGCACTCCCAAAGTGCAGGGGAGCTCATCCACTCGCTCAAAGACCGTGC
AACCGTCTAATCTGAAGCAGTCCTCGCTGGCATTAAAGAAGAAGAGTGTGATCAAGTAGG
AGAAATATATGCTGACTCGTAGCTATTGATACCCTTGTTCAAATTTTGAGGTGGTTGGCT
TAATGATGTTCTGGGTTGTTTGTTCTTAGGGGGGCTCGAGATGCGGTGACCGGAAAGGCA
GACGCTGCTGCAAATGATATTAGGCAAGAAAATCAGGCTGTGAAGAGGCAAAAACTAGAT
GATGGAAGTACAAGACAGGTATAGCAGGAACTTGTATTAATGGTAGAACTTATCCATGGT
ACTGTGAACTTATAAATCGCTGTGATGACCAGATATTGAACGTCAAGTCCCGGGTGCTGC
CTCACAAAGGAAGCGGTAGTTTAGCAGGAAACACCGAGGTGATACTGTCTTCCATGAGGC
ACCGCCATGACGATGCCCACTCTCTCAAGGTGGCGACATCTTCTGGCTCTAAACAATGTT
CATTTTGATGCGTAGTGGGAGAGATATGAAACTGAGGTGTAATGTGATTTTTATTATTTT
GTGAACTTGTACTTACTGTAATTGTTGCCCTTTTTTTCAGGAAGTGACAGTGACTCCATA
TATTTCGGCAGCTGAAATGGTCAAGAAGTTCGAGTCAGGGACCAGAGATTTGGGCAGCCA
CTACAGCAGATCAATCTCTAATGTAAGTTTAAGTATTCCTTGCATAATGTTTGTTATTCA
TGGTACATGATAGCAGTTCAGAGTTTCTTAAAAAATTCATTACCTTTATCATCAATCTGT
GAAAATATGTGATGATGAAAACGGTATTAATAGTTAACTTTTGATAAAGGGAATATATTA
ATAGTTGACTAGGAGCTTACATCCATATTGCAGTTTGTATGCTCATGGTGAATTGCTGTT
GTTTAATTCATATTGCGGATCAATGTATAATGTAAGTTTAAGTATTCCTTTCGCCATACT
GTGTCGGTGTAAGTTGCTTAAGTTTCGTTATTCTTGGCTCATGATAGCAGTTCAGAGTTT
GATAAAAAAAAGGTCATACCTTCATCAATCTGTGAATATTTGATATTGCAGCTTGTATGG
TGAATCCATATTGCAGCTTGTATGGTGAATTGCTGTTTTTTAATTTATTTTTCTTGGTGT
CATGATATGGATATCTCCACTAGCAATCCAGAGTTTGATGAATTGCCTGCATTTATTAGA
TCATAATACTTTTGGATTCGCAATACAGGAGGATGCAGCAACTGCCTCACAGAGAAGGCC
CAAACTTATGCTAACAAGGCCCAAGGAACCTGAGTTTCAGACTACCCACAGGGTCCGAGC
AGTCCGAATGAAAAGCTCTTCAGAACTAGAGGAAGAAATGCTGGCCAAGATTCCAAAGTT
CAGAGCACGTCCATTTAACAAAAAAGTAATAAATTTTCCTACGTCTCTGTTTAACTAAAT
TAATTGCACCCGCCTAACTAATTTCTTGCTTCTGCTTTTAGATAGCTGAAGCTCCTTCTT
TCCCTCCTCTTGCAAGGACAGCTCCACAGCTCCCCGAATTCAATGTACGTATTTGACTGT
CATAACAAATTCACTAAGTGATCGTCTGCTAATTAGGTCCTGCCTTTGCATTGACTACAG
GAGTTTCACCTTAAAACGATGGAAAGAGCATCTCGACATGCTGACACATGTTCAGAAGCT
TCTTCTGTGGGAACTTTGCGGGTAAGCATAATAGCACCTGGTTGCCATGTTATGATATTG
ATTGTGGCAGTTACTGAAAGTTAAATACATCTTGTAGAGTCAGGGTAGCAAGCCACTTAA
ACAGACTGAAGCTAAACCCCCACAACTTGAGACAGCACTGCGTGCAAGGCCATCAAGGTA
CATACATTGAGGAAACAATGATCACTTTTACTGTGCTGCAACCTTTTATGTCCGACTCTA
ACATGAGCTTTAACAGGGTGAAAAGTTCTCAGGAATTGGAACTAGAAGAATTGGAGAAAG
CCCCCAAGTTCAAGGCCAAGCCACTGAACAAAAGGGTATTGTACATTTCAAGCTTCTATA
CATTCCACCATATAATGCTTGGGAACAACTAGTCTGAACATCATTTCATGCAGATTCTTG
AGAGCAAGGGCGATATTGGTGTTTTTGTCCACCCGAAGCCCCAGGCAACAGAGCCCAAGG
AGTTCCATTTTCGTACTGACGACCGCTTGGGACCTCCTGCAGTTGCGGATCTTCTCGATA
AGGTGTGTGCTAATCTTCAGAGAACTAACAAAGTGAACCAAACAGTGTTGTCAGCAACCT
TCTCACCTTTTTAAATCTATCGTCCTTTTTTTTGCAGCTTTCTCTGTACTCGGAATCTTC
TTCCTATCATGACAAGAAAGATATGCCGAGACTGACGATACCCAACCCTTTCAATTTACA
TACAGATGTATGTAAAATGTGTTTATACTTTACGACATTAACGTTCTTGCCGATCTTTGC
TGTGAATAACACTGTACCCATGTATGTTTACAGGAAAGAGGGCATGACAAGGAGAGGCAA
CTAGAGGCGCAACTGTTGCAGAAGAAGCTAGAGGAAGAGAAGGCCCGGAAATTCAAGGCT
AATCCATATCCTTACACCACAGACTATCCAGTGGTACGTGCAAACGGATAGATATATGCT
GAACATATATCCTGGTTGCAGGCAGGCCATCTTTTAACCCACACTTTCCACTCAGGTGCC
ACCAAAGCCTGAAGCGAAACCATGCACGAGGCCAGAAGGTTTTCAGCTGGAGAGCTTGGC
GAGACATGAAGTGGAGCAGCAAAGGCTAATGGAAGAAAGAGAGAGGATGGCGAGGGAAGA
GGCTCAGAGGAGAATTGTCAGGGCACAGCCGATAATGAAAGAGTAAGTAGAATATGATAT
GCAATATCTTGTCATACGCATGACGTCTTGATTTATGATTTATCTGCTGTCTGGGAGAAA
GGCTAACTTGTAATTTGGTTGCAGGGATCCTATTCCTCTTCCACAGAAGGAGCGGAAGCC
TCTTACTGAAGTGCAACTGTTTGAACTGCATGTTGATGAGAGGGCGGTTCAAAGATCAGA
ATTCGATAACAAGGTCAGTGGTTTTGCCTGCTTTTGCTCCTCTGAAATTATTAGATTTGT
AGGAAGGAGGTTTTACGGAGCATTTCATTGTGATGCAGATGAAGGAGAAGGAGATCGCTT
ACAAGAGGGCGCGAGAGGAAAACGAATTTGCACAGAAGGTATGTGTACATGCGACGCATC
CCTGCATCAGTCTTTTTTCTCTTGTGGTTCTACTTCTACCATGTCGACTAACCAACCGAT
GTGTATGTAATCTGCGTGTGAAGATCGAGGAAGAGAAAGCGCTAAAGCAGCTGAGGAGGA
CCTTGGTGCCACAAGCACGGCCCCTCCCAAAGTTTGACAGGCCGTTCCGCCCACAAAGGT
CGATGAAGCAGGTGACCAGGCCCAAGTCGCCACAGCTTCAGGTGAATGAAAGAGGGGCGA
GAAGGCACCCTTTCATGAGATAGATGATCTCAGTCTCCAGCTGGTTGTACCTCTTCTCTT
TTTCTCTGACGTCCCCTATCAGTATTTGTTGTCATTCTTTCTGATCGTTATACCCAGAGT
TCCGTGGTAGTAGTATAGTCAGTCAACACAGCTGACTCTGTGGATCTGAGATTGGGCCAT
TACGGATTGCTGATTGATTGATGTTATTATGTGTATATTAATTCCAGTTTATGCATTTTG
TGCATTATTTGACAACTTGCAGTGCCGCTTAATTATGCGCTCCCCATTTGATGTTTCACT
GTACATGCCGCAAAGAAAAGGATGTTTGTGCATGTCTATTTGCTGCAAAACCCGTGTGTA
GTATCAAAAACTCTATTATATGAGACCATCATTAGCCTCTCGAGGTAGGCGACCGCGGCC
AGAAGTTTTTTTTAGTTTTACCGGCAAAACAGCAGGGGGGTCATCTTTCGCCGTTGTATA
GCCTCTTAGGGTGTGTTTGGTTGAAGGGATAGGCTAGGGTGGTTGTGGGTATCCCCAACC
AGGTGGCTGGGGATAGCCTTTTTT