| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
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Predicted Genes from contig_131542
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_3540 |
1 |
969 bp |
MLOC_3540.1 |
Available |
Available |
LOC_Os05g51500.1, FRAME:-1, EVALUE:2e-23, 13105.m05555 protein eukaryotic translation initiation factor 5B, putative, expressed |
| MLOC_3539 |
4 |
2852 bp |
MLOC_3539.1 |
Available |
Available |
LOC_Os05g51500.1, FRAME:-1, EVALUE:0.0, 13105.m05555 protein eukaryotic translation initiation factor 5B, putative, expressed |
CDS Structure of MLOC_3540
CDS Structure of MLOC_3539
Contig Sequence (7870 bp)
>contig_131542 7870 assembly3_WGSMorex_rbca.fasta
CCACGGCTGCCCATGGAATTTTAAGGATGAAATTGTGTTTACGAGGGACATACCTTGAAG
GTGTTCGGGCCGCCGTGCCATGGGAGGTGTATCCCTGTGTACTCCGAGCCGAAGAGGTCT
TCGGCTGGTTTGATTGAGCTCGGGCTCGTCTACCTTCCTTTTGTGCCTTTATGGCCGGCT
TGTGGCTTGAAGTTTCGCTGTCATGTTGGCACTCAGCTGCCAATGCGGTCGTGTGCTCCT
CTGTCCGGAGAGAACGCTCTGTGTTGCCGTTGACTGTGATGACTCCCATGGGTCCGGACA
TTTTGAGCTTCATGTAGGTGTAGTGGGGTACAACGTTAAAGCGGGCAAAAGCTATGCGGC
TGAGCAGTGCGTGGTATCCGTTGTGAAAGGGGACAATGTCGAAGATCAAGTCCTCATTGC
AGAAGTTGTCGGGCGAGCCGAACACAACCTCCAGTGTTATCGTACCTGAGCAGCGGGCTT
CGACGCCCGAAATCACCCTTTTAAAGGTAGTGCGACTTGGTTTGATTCGTGATGGGTNNA
TGCCCATCTTTTTCATCGTATCTGAATAGATCAGCTTAAGGCTACTATCTCCGTCCATGA
GGACTCTAGTGAGGTGATATCCATTGACGATGGGATCAAGGACGAGGACGAACGATTCTC
CATGACGGATGCTGGTCGGATGATCCCTTATGGTCAAAAGTGATTGGGCAGGCCAACCAC
AGATTATATTTTGGTGCTACGGGCTCTACCACGTACACGATACACCTCTTGAAGAGACCG
CTTCCTCTTCTTTTTGGGTATATAGATGACGTAGATCATGTTCACGGTTTTGACCTCAGG
GGAGACTGTTTTTTGGCCCCCATTGTTCGGGCCACGTGGCTCCTCGTTGTCTTCACTTCA
TGGGCCCCTGATCCTATCGGTAATGTTTTGTTATGTATTGCATCTAATCCTATCGGCAAT
GTTTTATTATGTATTGCATGACAGAATGCCGTATCTATGAAAATCATTGTGGTGACTGTA
GATAAATATGTTGTTGGGTTACCGTCTTCCTATGCGGTTGATAGAGTTTCCGCTTGAGTT
TTGATGCCTGGAATGCTGCAAGCTAGGTCATGTGCAGCATTCTTTTACATGTCTGTTATG
CAGTTGTGCGTTGTGTTGTCAACATTTTTCTCCACTTGTTTTTCTCAAATATATATAGTG
ATATATACTAATGGACTATAGCACATTGTCAATCTTTTTTTAATTAAAACATATGCATGC
ATATGTGAGCATGGCTAGAACTTGTCTAATGGTTGCCTAGAATAGAAAGCCTGTGAAGTT
TCTTCAGACAAGAATATCACTCACATTATTTTACCAAGGTACGTATCTGCGTCGATCTAA
GTGCCTACCCTCAATCACACGAAATCAAAAGCTCCTCAGCAAACAACGCCAGCTTCAGGT
TAAATCTTCAGGTGCAACAAAGACAAGAACAAAAAACGCCATCAAAAGAAACAAAAGCGC
CGCTCCCAAAGGTAAATCTGCTGTTATTACTTGTAAAGTTAGGCGCTTCATCTTTCCGAC
CGACCAACCGTATCATCATTCAAAACTGAAACACCATGTTTGTGTGGAATGGCGCAACAA
GAATAATTACCACCCTCGTCAATTTATGCACTCTCTGTGCCATGCCGACCCATGACCACG
AGGTGGCTTCGGGGGGCTCTTGGCTGACAGGGTCGCGCCGGCTTTTTTTTGTCAACAAAC
TCATGGAATACTCAGTATCTTCTTCAGCTTCATCACAAGTTTCCAGTCATCCATCGTCAA
GTCATCCTGTTGGTCACCACAGTCAACAACAAAAATCAGCAACCAACTGGTGGTGGTGGC
CTGGAACAACCACCAGAGTATATGGGCAGACAACATGGTGGAAAGAAACAAGACTTGCCC
TGTAGTTCTCCTTAAGAAGGTCGATGGATCGCCTGGTGATGTGGCTGACCAACTCGTCTT
CCATCTCAAAGTGCCTGCCAAAGCTCTTCTGCTGCTCATCAGAGTTGCTCCCAATGATCT
GGCCACGACCCAGGAAACAACATATGTCAGACAAAACCTGACAGATCTAACAAACACTAG
ACAGAACCGAGTAACATGGGGTAATACCGACCTTTATAGCCACCTTTTGCCCTTTTGTGG
CCGTATCAACTTGCTTGTGATTAATTTCAATGGAGGCAATCTTCCCAATATCGATAAACT
CTTTCGAGGGTATGCACAGAGGTGTTCCCACCTACATGACAGGGGGAAATGAGAAATGGA
ATACATATCTTGACAAAGGCCACTCCATGATAATATTCAAGTTTTTCGGACATCAAATTC
TACATATATGATAGTTTCCACCTTTTTTAGCTCAAGAGTTTCTTACAGGACTGAAACAAA
ACTAAAGAAGAAGTGTTGACCTCTTCTTTCGGGATAAGACCTGGAAGAAGCAGGGATTGA
ACAAGGGCTTGAAACCCCTTTCGAAACTCTACTTTTTTCCACTGACTCAATTCTAGTTTA
TTAGATTCTTGTTTAGAGAGGCAGTACAAAGGTATGTAAACTATAAAAACGAGTCAAAGT
GAATTGGCCCACACTAGCACTTCCATCTTGTCCGAATCGAGTTAATTACATTGTGTTGTT
GGTGGAATTCCGGACTTAGAGAAAGACACAGAAGAGGAATANNNNNNNNNAGAGAGCAAA
TATAGGACCCAAGGGGGCACAAATTTTTAACGAATATTAGAGATAACGTTCAAAACTTCA
TCAGCCACTGAATTGGGTCGATTTTCCTTTAAGATATCAAAGTTTCCACTTTCTAAGATT
TTGAGGTATTTGTTCATCTGTGTGGCTAGTTATTAACTACTAAGTACATTCTACAGTAAA
AATTAGCTTGAGAAGGAGATCAAAGACCATAAACACAATGATGTACTACGGACACATGAC
AGTTTCTAATTTCTACATGGTGAGCCTACTGGCATTTGTTCATCTAGGGCAACTAAGAAC
TACTGGGTATTCTAGAATGATAACTTCTCGGCTAACCAATCCAGTAAAAAAAAGGTTAAG
AAAATATAAATTTTCACTGATCGGACAAAATACCTTGGCTATTCCTTCAAGGATATCGAC
ACCCAAAACAATTGGATCCTTCTTGTTGAAGACACAGTTCGGCATGATCTTAAGAACACA
GGGGAAAACAGCTTCTTCAGCGCTGTCCTTCTTCTTCTCTTCCCTTATGTTTTTAATGTA
TGCTGTAAATTGGTCAAAAAGGTGGTATATTATATCTGCAACAAAGATCTTCACGCCAGA
CTCTTCTGCAAGATCACGGGCGTCGGGCATCACTTTGACATCAAATGCCAAGATAGTTGC
ATATTCCTTCTTTCTCTCAAGCATAACACTGGCCTTCATAACATCTTTCTTGTGCACTGG
GCCTATGCTGAAATCACAGAAGGGGATATTCACAGCAGGGCTCTTCAAGAACTCAGTCAG
AGCTTCCAATGACCCAAGTGTAGATGCTTGCACATAGACACCCTCGCCACTCTTATCGAT
CCGGTTCCTAACCCTTGACATCTCTTCCATTACAGCATCCTTCAGGTCCTCTATATCAGC
ATCAGGTCGTACAGCATATAGAGCAGTCCCAGCAATTGCATGTTCGAGACCCTGACAGAG
AACACTCGTTATTTTTCAGAAGTGCGCTGATATTTACACTCTGAAGTACCAAAAATTTAA
TGAACCCACCTGAGCTGATATTTTAATTCCTTGTGCAGCTCTGATCTTCTTATGGTGAAG
GTAGGTGCCCTGAAATTTTGAGTTTCAATGAATTAGTCAACTATAAAACTTAAAAGGTAA
ACCAAAGGCTCAAATCACATTAGTGCAAAAAGAAAACAACGAATCATAATATGCAAGCAT
TTAAGTATCTTGCTAAGGCGTAAGCATGGTGGTGTCTAAGATGAAGAAATACAGATATAA
CTACTACCTTCCACTGAAATAAATTAATAAAAAGAAGGGAAAATGCATGCTGGTGAGTGG
CATTGATTGAAGTGACAAAACTAAATTAGCGAAGAAAGAGAAAGCAGCAGGTGGAAAGTA
TTTAGGACGTGTTTGGTTGCCCTTCATACTTGTTGTAGCAGACAAATTGGTCAGCACACA
TGTGGCAAAAGTTGGCTGGAAACTGAGTCTTATGACTAAATGGGGTGACTGACTAAGAAA
ATGTGGCATGCCACCTGTGACTGCATCCAAACACCCGCCGCACGTGTCTGCCTAACATTT
GGCAAACTATGGCTGCAAACCAAACATGCCCTTAAGATTTCTTGGTAGAGTTAGCATGAC
ATTAATTTACTGTTTTCAGGTACGCACAAAAATGACATGAGAACATAAATCTTTTGAAGA
AAGTATGAACAATATAAACCTCCCAGATGTAAATGTCTTGATCAAAACTATCAATAGGTC
CCCAGTCATCAAAGCACCAAAAGAGAATGAATCTTTAAGGTGGCAGCCTAGTTGAACAGC
AATATATTGGATCTAAATAAGAACTTAAACGCAGGTACAGTATAATGAGCCACACACCTT
GACTCGAAGCTCCTTCATCGGGTGTGGTGTTAACAAAGCTCTGATGGTTGTCACAATGGG
TCCCTAAATAGATATAGAACGAGAACATAATGAATCTTCATGTGCTCGTGATGTATTTGC
TGCAGCAAATGCAATTACACGAAAAAGATTCTTACCTGCATGCCACACACGACTATTTGA
TCTCCTTCATGTAGCATACCATTGACCAGCACAACATCAACTGTAGTGCCATGACCTTCA
ATGACCTTGACTTCCAGGACAGTACACTGAGACACAATAAGATAAGATCATAAGACTGCA
TTCTTCTACAATGACAAATAGTCGTGTGGAACGGTACACTGAAACAGAAAAAGATAAGAT
CATACAAGTGAATTCTTCTACAGTGATGACTAGTAAACTCATATATGCACAGTACCTGGA
CTTCATCAACAAAAGTAAGCTTTTCTTCCATCGTCTTCTGTGCCCATTGCACCAATAGTA
GAAGCAGATCCGGAATGCCTTCACCACTGCAGAGAGAAGTGCATTATGTATTAAGGAAAA
GATGCTAGTAATATCGTACTTGCTTCCAGATATCTAAATGAATGAACCAATAAGATTAAT
GGTTGATCATGCCTTACTGCACTGGTAGGCACAATGTTAAATGTATCTTCCATCTCTTTG
TTCTTGTAGTACAAAGCAGTATTCACACCTTGCATCTTGAATTGTGTCACAATCTGTTGG
ACAAAGCACATACATGTGATTAGAGCAGCACCAACTAGTAGTTCTGTCCATAATATGAAA
ACAGGAGGAAGCAATAATGTCCACATACATCAGTAAGCCTCGTATTGAACTCCAACTTGA
CATCATCATTTTGTTGTCTTAAGGCTTTCCCGATAGGAGCATTGGGGCAGGTCTTCCAGC
CATAAAGACGATCAACCTGCATACAGTGATAAGAAACAAACAAATAAATGGCAGAACAGT
AAGGAAGCCAAAAGTCAAAGGGGCAACAATCCAAGAATAGTACCTTGTTCAAAGCAACGA
TAAATACTGCATCTCGACTTTTCAAGAGATTCAGGGATTCAATTGTCTGGGGTTCAAGCC
CATGCATAATGTCGACAACCAAAATAGCAATGTCACACAAACTTGAACCTCTAGAACGCA
GATTACTGAAGGACTCGTGGCCAGGAGTATCAATAACAAGCAGGCCTGGAACCTTAAGAG
TAGCATCAGCCTTCAATTCCCTTGTTCTCTCTCTAATGTTCTCAGTTGGGAAGTATGTGG
CTCCAATCTGTTGAGTAATACCGCCAGCTTCTCCTTCTTGCACATTAGTTCGCCTAATAC
AGTCCAGCAGCTTTGTCTTTCCAGTATCGACATGACCAAGGATGCAACAGATTGGAGAAC
GGAGGTCGCTAGCATTGTCACCATCATCGTCCTTAGAAGATCCTTTCTTCCCTTTCTTTT
TAGCAATTCCGTTGTTGGCACGCACATTTTCAGTGTCACTCTTTTTGGAGTTGTCAACAG
GCGGAGCAACGTTTTTTACAGCAGGCACTGCAGGTTGTGGTTTGGAAGTTTCCTGCTTCG
TGGCAACAGGCTTCTCCTCTTCCTCCTCGAAAGCACTTGTCTTCGGCAAACCCACATCGA
TATCATCCCAGCTCTTTGCATCCCAGTCATCTTCATCTTCCTCCTCCTCTTGTTTTGCAT
CTTCCACCTCTTGGTCGGGTTCTGTTTTTGTCTCAGATTCTGCCACCTGAGACTGAGATT
CCTGGTCCACTATGACATACTCTTCCTCATCAATGTTGGCTTCATTTACCTCTTGCTGTT
GTTCTTCAGCTACCTTCTGAGTCTCTGAAGTCTTTGTTTGAGCTTTTCTCTTCTTGCTAT
CATACTTGGGCCTCTTCTTTATCTCAGGGGCAGCCCCATCAGCTACTGGAACCTCACTCT
CGCCAAGGAATTGTCTCCTCATGGCTTCTAACCGCTTGGCCTCCTCCTTCTGCTTCCCTG
TTAAAAGCTTACCATCCTGCTTCTTCTTGAGCAGCTTCTCCTTTTCTCTCTCCTTCTTCC
TCCTCTTTGCTTCCTCTGCCTTCTTCTCCTCCTCCTCTTTCTTCAAACGCTCCTCTTCCT
CTTTCCTCATACGTTCTTCCTCCTCTTTCTTCCTCCGCTCCTCGGCTTCCTGCCTCTTCG
CAAGAGCCTCCTGCATTTCCCGGACATGCTTAGGGAGCTTCTTCATGTCAACCTTGCCTT
TAGGCGCCTCTGGCTCCCTTTCCTCCTCCTTCTTAGCATCTGTCCCCTTTGCTGCTGCCT
TCTTCTCCTTCTCTTTTTCTTTCTTCTTCTTTTTCTTCTTGGCTGCAGCGGACTCTACCT
CTCCTTCCCCGGCCTTCTGCTCCGCATTAGCATCCTCCGCAGTTTCAGCATCTTCCTTCA
GTGCTGGAGCGGAAGGCGGTGCCTGGGATGGTTTCTCCTTGTCCGGTGCCGGTGTTGGGC
CTTCACCGAGCTCGGCAAGAAGCTTGTCCAAATCTTCCTCTTCCTGTGCTGTCCTTCCGC
TCTTCTTCTTTTTCTTCTTGGATTTCTTCCCTTCAGCATCATCCACAATGGTCGCGGCAG
GAGCAGCCACGGTATCCTCTGCCTTGGCTGCCTTGGGCTCAGGCTCCTCAGCGGCAGCAG
GCCGGTCCTCGATCTCTGCAAGGAGCTTGTCAATGTCCTCATCGTCCACAGTAAACCCTC
CCTTCTTTTTCTTCTTCTTGGATTTCTTTCCGCCGGCATCATCGGCGTCTGGGGCAGCCG
CAGAATCCCCACCTTTAGCCTCCTCCGGCTCAGCCTCCTTTGTGGGTTGGGGAGGATCCT
CCATCTCAGCCAGGAGCTTGTCGATGTCCTCATCGTCCACGGTAAACCCACCCTTCTTTT
TCTTCTTCTTCTGTGGCTTCTTGGCGGCAGCCTCCTGCTCATCCTCTTCCTCGGCAGCAG
CTGGGGCAGCAGCAGCCTCCTCCTCGTCGTCTTCTTCCTCGGCGGACTGGCGAGCTCCCT
TGCCCTTCTTCTTTTTCTTCTTGGACTTGCTGAAGTCGAAATCGAGGTCGACGTCGTCGA
GATCGCCGCTGGCCTCGGACCTACCGGCCTCGAGCTCGGATGCGGCGGCGGAGGCGGGTG
GCTCGTCCTGGCCCTGGTCCTGGTCCTCGGCGGCCGCGAGGGCGTCGAAGGCGCTCATCC
CGCCCCCGCCCGCGCCGCCCTTCTTCTTCTTCTTCTTGCCGGTGAAGACGGTGTTGATCG
GCTCGTCCCCCTCGTCATCCCCGGGCGGCGGCGGCGGCGGGGGGGCGGGGCCGGGGGCGC
GGGCGGGGGG
