morexGenes - Barley RNA-seq Database

Contig contig_131536
Source Contig contig_131536
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_131536 (6554 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_131536

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_3536	1	556 bp	None	Available	Available	None
MLOC_3537	1	936 bp	MLOC_3537.1	Available	Available	LOC_Os01g42870.1, FRAME:-1, EVALUE:6e-25, 13101.m04414 protein transferase family protein, putative, expressed
CDS Structure of MLOC_3536

CDS Structure of MLOC_3537

Contig Sequence (6554 bp)

>contig_131536 6554 assembly3_WGSMorex_rbca.fasta
GAACCAGACGCCCTCGCCGGTGCAGTTCACTGCAAGGCCACTCGGGGCGACGCGGCCGGC
CACCGGGTAGTACGGTACAAGAGTCCTCGCGAGCCCGTCGCGCATAGCGACCAGGGCCGC
CGCGGCGTCCTGGCTCTTGCGGGCGGTGGTGAACGAGGGAGGGGGGAAGACCTGGATGAG
ATTAACCAAGCCGGCGCCGCCGGCGGTCCTGTCAATGGAGGAGAGAGGGAGGGTGCCACC
GGGGGTGGGCACCGCCGGCGCGATGAGCTCCGGCGGCGACCTGGCAATGGTGGGCGTGCT
GGTCATACTGGAGTTGGACATATGGAACTCGATAGTGAGATAGTGCTGCAAAATGTGGTC
GTTGGCGGCCGCGGTGAGGCAAGCGGGGACAGAGAAATTTGTCCGCTCGACGTCGCATCT
TTGAATTTTCGGAAGAGTAACATTGTTTGGCTACTTGTCCATGGACTCAAGCGTTAATCC
ACATCTTTCCTGCCTGGTGACCTCTAATGGCGTCCCCTCCCCACAAGTGGAACGCAATGA
AGCATCGCTTTGGATAAAGCCTGACGTTTCACAAGAATTTCAGCATCAGTCAGATGTCTT
TGTTTTTCCTTCTTCCCTCGACGAAGACCACATCAGAATTCAGAGACGGTCATGACTATC
TTTTGGTTAAAATTCAGAGGTTACTACGACTAGTACAACATAGTGCTACAACTCTACTCT
TCCGGAGACACTTTTTTCCAGCAAGCAGTTAATTAGTCCGAGCAAAATCCTCTCCATCAA
TTAGTCTCGAAAAAGAAAAGAAACGAAGACAGAAACAACTCCGCATCCGCGCCAGCTTAG
GTAATTACATGTGCACGGCGCCGGGGACGACGATGGCGAGCGCACGATTTGATATAACTG
CTGCACTGGCTGGCTACAAGTAGGATGGCGCGACGCGGAGGGCCCTGGCGTCGGAGGGCA
GGAGCACGAGGAGGAGGAGCACGGCCAGGATGGCGACGGGCACGAGCAGGAACAGCGGCG
GCGGCGGCGGCAGCGGGGGCAGCAGCAGCGGCAGCACCAGCAGCGCCGCCGTCATCAGCG
CCAGCACAACCGCCGCCTCGGCCCCGAAGTACCCTCCCCCGTCGCTCTTCCCGCCGTTCC
CCGACGGCACCGGCGCGCGTCGTTGCTTGGCGGTCGCTGTCGGAGCCGGAAAGTACCCTC
CGGCAACGTTCCTGACGCTGCTGCTGCCGTAAGAGGTGGAACCGGCGGCGTGGCCGACCA
TGGTAATGGTAGCGTCGCACCGGAGCAGGACGGCGTCTCGCATCTAAGTCCCAGCAATGC
CGCTAGCTCGGAGATCCACCCGGCTGGGCGCGCCGGCGTACGACTTGGATGCGTGGATTG
GAACGGAAGATGGCGAGGCGTTTGCTTTGGTGGGCAGGACTTGGAGGTTGGAGTGGTTGT
TAGCTTTGCGGCGAGCCGGTGAGGTCAATATATACTCCGTCGCTCTCCTTGGATGGATAC
AGGAGAAGGGGGAAGAACCAGCGGTACGGAAGGATGGCCATGTGTCCACTTGGCCAGCGG
TACAATCCACGTCGGTAAAAAGGAAAACTATTATTTGAAAGGAAAAAAGGAAATCTTAGC
AATCATGGGTAGCCTTATCCAAACTCGACAACCGTTGTAGATACTCCTTCCGTTTCAGTT
TATAAGTCTCTAGTTCATTAATTTGACCAACTTAAAAAGAGACATATATTACAAAAAAAT
ATATCATTAGAAATTTTAGATGTTCTATTTTCTAATAATATAATTTTTATGTTAAATAAT
ATATTTTATATAAGTCAAATTGACAACCTAGGTACACGTGCATGTCTTATAGTCTGTGAC
GGAGGGAGTACAATTGATCTGGATCATAAATCCAAAAAATTACAGATTACCTCAGTTGAT
TAAGAACTGCTCCCTCTAATTCCTAAATTTAAGCTAATTTCAATGTGAACTGTATAAGAT
TGTATATAGATATATTTTGAAATATACTCCCTCCGTTCTTAAATAAGTGTCTTAACTTAA
TACATCTTTGTACTAGAGTCAGTATAAAGTTGAGACACTTATTTTGAGACGAAGGGAGTA
AATTCATTCATTTTATTCCGTACGTAGTTCGTATTAAAATTTCTATAAAAAATATATTTA
AAAAGGAAAAAACTACAACAAAAATCTCGCACTGCAATCGGGTCGCTCATCTGAGAATAT
GGAACATGGTGAGCATTGAATGTAATCGGGATGGATGATCTCATAAAAGTAGAACAACAA
AAACTTCACTAAAATACCAGAGAAGCAATCGAAGGCTCCAAACGATCATACCAACAAAAA
GAAGCATCAGATGGTAGCACAAGCTTATCTTATCCACATTAACACATCTGCGAGGAAATA
AATTCAAATTTCATAAGATCAAACCTATGATGACAAGACATATCTGGCTTAGTTGCTCTA
CTTGCTAAGATACCCTTCCAGCAAGAGAAGGATGTGAGGAACTTTATTTTCAACGGGTTT
GCACTCTTCGCCTAAGAGTCGCCGACGAATACCCTAAATGTCATACATATATTCCTTTTT
GTCGACTGTTGGTTTTGAAATAGCTAGCATATTAAGCTCAATAATACCGATATAGACTTT
TGAGCATGCTTAGAAGGACTCAAGACCCCCTTCCCTCGTTGCACGTGACCGGAGACAAGG
GAACACACGAGATCGCAACATATTCTCAGACCCTAATCGACGCATGTCTTCGACAAGAGA
AAAAGTAAAATTGTTGATCGAGACTCGAGAAGAATTGTTATCGTATCGATATACTCCCTT
CGTCTGAAAATAAGTGTCTTAACTTTGTAATAACTTTAATATAAAGTTATACTAAGTTTG
AGGCACTTATTTTGAAACGGAGGGACTAGCTTACAACATGGTCAAATGAATGCATGATAA
AGAAAATTCATTAGGGCTATTTCAAAAAATGCTGCAGGTACAAGAAAAATGCATGTTATT
TTTCTTATGGAATGGATTGCAAGTGCCAACGGGTTTGCAGTCTCCTAAGTGAAATGAGAT
CAGCTGGCGTGGATCTTGGATCCAACGGCTAGAAAGGGATACTATTATTTCGGACAGCAG
CGCCAAGGCAGGGAGACGCAGAGCGAGTGACCGAGCAGAGCGCGTCAGCGTGGCGCCACA
ACCAACGAGTGATCGACCGCGATCGGCCCGACCTAACCCAAGAGGACGAGGTAGGGCAGG
GGTACTTGTCTACACCACCAGCAAGCAAGGCAAGCGATGCATCATGCATGCATCCAGCAG
GCAGGAGAGATCGGGCATCGGGCGAGATACTATCAATCTACCATTCATCATGTGGTGCTG
GGTCGTGCCACCGCGACGATGGGCCTGGCTCCGTCCAGCTCCTGCTTGCCGCAGCAAAAC
CACGGGCGAACCCGTCCCCTGTTTTGCAAGGTGCATGCACCTCCTTGACCGTGCGTACCC
ATCTCTTCTTCTTGTGCTGCTGCTGCTGCGCTATCACTATTCAGCAGCAGCATCAGTTCC
CGATCTGGCCTGCCATGTCGTCCTCAACGAATGCGATCGGATGCTTTCTTGCTTGCTAGT
TGCTACTACTACCAGTCCTGCCTCCCTACCAAAGCTGACGGTGCTCGTGCATGCACCCAG
AGGCCAGGGCCAGGGACAACTAGTCGTTGTACTAGCGATGGACTAATCATCCACCTGCCA
TATCTTTTTGCATGATACTACGTACCACTCCTAATTCCTCCGGCTGATTAGGAGAAGTGC
GCTTAGCTAGTCCTGTGATTAAACTAGTCCACGAGCAGGGCATCATCTGGCTGCAAATGG
CTGCTCCATCAGTGGAGCCGGACACGAATCTCGAGTTCTCGATCTACCCTGTCCCCCTTG
CTTAGTTGGGAATAGAAGATTAGGCTAATTTAAGCTGGCAGCTAGTGCACAGGGCGAAGC
AAAGCTAGCAATATGGCGACTGCTCATGCTCAATACGCCCAAGCGTGTATCCGTGCGTGA
TGGGGGTTTATCATTACAATCCCAAATTGCCACATGATGAAACAAGTAAAGCTGCTAGTT
ATGCGTACGCCGGTCTGATTAACACGAGTGGATTGGATTGGACGGCACACCAACACACGC
TGCCACTTGATCCAGCATAGGTTAGCTAACGCGATCTGGAGGAGTAGTCGTACACTCTGG
TTGCCTACTTGGAGTAGTAAAAATAATTCTACTTGCCTTGCTACAACGTATGCATCGATT
TTGCAAATACTAAGAGATATACTCCTACGAAGCAGGACGAGCGGGGAACCGGAATTTGGA
ACAACGGTCGGTCGGTTCTTCGGCCTTGGCTAGCCCTCCTCACTTGCTCGGCAAACGTGG
GTTGACACGAAGAACTGATGTGTCCCGTCATGCCAGCCGAGCGAACTGTGGGGTGTGGGC
TACTAAGAGCCAATTTTGCCAAGGAAAGTCTACATGGACGAACGAGAATCACGTGCCTAT
ATATTACTGCCTTGAGAATCATCCATGTATGTGCACGTTGAAAATCGCTGGCCGGCGCAA
CAATGTCTTAGGTGTGCGGTGTTGGGCGGCCACGGCCACTGTTCCAGTTGCGGCACATGC
ATGCATGTACATGCTGCGTGATCTCGACTGAATTGTGTATGGTCCTGAAAATGCATGCAC
GTTATAGTGTTCGACACTTGGACGCACGTTGATGAGTGGACTAACATTTAACTAGCTTTA
GCTAATTGGTGGTGTTAATATGTTTCGGTTTTATTGTTCACACCAGGAGCATTTAAGCCC
CGTGTACAAGCTCCACGTCCCTAGGGCTTCTCTTATTATTACATTTTCGAACACTATTCA
CCCATTCGATTCAAAAGAATGGGCCATAGAAAAAATCTAGGATTTTTCTCTTTGGTTCAA
GCTTCATATTTCTGTTGGAATTTACAATTCGCACCAATTCCTTCTTTTAAATTCCTATAA
ACAAAGATCAAGGCAAAGCCCATAACGAGCGCAATGTTAATTTAATCATGCCTTTGCATA
TGTTTAATCTTAATTTGACTACCTTTTAGGATTCATCTGTTTTTCTTATTTTTGTGAATC
AAACATACAAAATCCTACTAATTCACTTGTTTTCATAATTATCTATTTTGCACATGCATT
CTATCATATTCATACGTTTTTTCGATCCTTATGTTTTAAAACCCGTGAATCAAAGGGTCA
TCAAAAGATTTCTAAGGGTTTCTTTGATTTAATGAATTATAATGCTTAGAAAAAAATCTA
CATGGGTTATTTGATTCGTAAGATTGTTAACCATAGGATTTTTTTTCCTTCGATATATTT
GCAGTAAACTTCATATGAAATTTTCCATCCACTCCGGAAAAATCCTACGTTTTCCTGTGC
ACAATCAAACACCCTTAAAATCTTGCAGTATTGGTGACGGCATGTTGAAAAAAACAACTT
CTCCTTAGATGATTTTGATAATTAATAACAACATATATTTCATTGGACTAATGGTTCTAC
TAAGTATATTTCATGAAAAGTTCAATCAATGCATTGGCAAAAGTTTGTGAGGAGACCCCC
TAAATGCGAGGAACATCTATTGACAACAAGCTTCAAGACTCTATATTTTATATTTTATGA
GGAATCACATTTGAGTTCGTAGAAAAGTCAATACTATTTAAAGGATATGAGGTATCTATG
ATGATCTGAGTGCTCAAATGTTTAGAGTTAGCCACCAAAAACCCTCATGAAATTCTCCCA
CAAAAATACTCTATCTAAACCCTAACACTCAAATTCAGTGCCACCAATATTTTCAATTCG
ACCCTACCAGTTTCTCCCCACACACATCCTATGTCAAACCCCATGGTCTCGGTGACACCA
AGTTTGAATTCGATGAAACAGAAATGAGTGGTCAACTTTCTGTTGTCCCATTTCTAAGAA
TCAGAATTTTCGAGTTTTAGGAATTGGTGACACCGAAACTAGTAACTGTCTAGGCTAACC
AAAATCGGACCCATCGAGATTTATATATCGGTCTAACCGAAACGTCAAGAGTTGCCACAT
TTTGCACTATTGAGTATAACCGAGTTTTTGCTTCAGTTTCACCGAGTTGGGCAATAATGT
TGTAACGGTTGAATTTTTGGAGATGCGCATATATAACATTTTTTCTAAATAACACATTTT
TTTATTAAATTTGAAAAATTATTGTGCAGGTTCATTTTTTTCGAAAATAACACGGCGTCG
GTCGCATGGGAGCTGAGTGGATCTACTCGGCTTAACCGAACCCAACATGATCTTATCGGC
CACACGGCAGCCGATAGGTGGCCACTCGGCCACGTGGCAGCCGACGACATGCTCCAGCAC
GTCACTCGGCCTGGGCTGCCTCTAGTTGGTCGCGGCAAAGCCGACTCAATAGTCGGCCAC
TGATGTCTAATACACACCCTTCTTCTTGTAGACTCATGTTGGGCCTCCAAACGCAGAGTT
TTGTAGGACAATAACAAGTTTCCCTCAAGTGGATGACCTAAGGTCTATCAATCCGTGGAA
GGCATAGGATGAAG