morexGenes - Barley RNA-seq Database

Contig contig_13046

Source Contig contig_13046

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_13046 (867 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_13046

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_3394	2	865 bp	MLOC_3394.1	Available	Available	LOC_Os07g04850.3, FRAME:+2, EVALUE:1e-40, 13107.m09971 protein pre-mRNA-processing factor 31, putative, expressed

CDS Structure of MLOC_3394

Contig Sequence (867 bp)

>contig_13046 867 assembly3_WGSMorex_rbca.fasta
CCCCAACCAACCTGCTACCGACTGCTCTTCGTGCCCCTACCCACTACAGTCGTTGCCCCA
CTCCACATCGGTGCCGCCAATTACCTGATCGATACGGAGCACCACCGTCGTCGATGAACG
ACTCCATTGGCGACCACCATCCTCCAGCGAACTCCTTCCCTTCTTTTGAGCTAGCTTCCT
CTCTAACCAGGTCCCCTCTCGGCAAGGTTCACCGAACACCAACCCGCGGGTCCGCATCCT
CCATGTCCTCTACAACGAAGCAACAGTGTCGACCCTCTGCAAATCTTCCCATGGATCAAC
ATCGCTGCCTTCTTCTCCCCTTCCTTTGTCAGGTGAGATTTCCAATTTTGTGCCTTTTTT
CCTTCCGAGAGCTAGTTCTTTATCAGGAGGATTTGGTAAAAACCATTGAAACATGTGATC
GAGCCCTTAATCTTGATGCTGCAAAGAAGGAGGTGCTTGATTTTGTTGAGGGTGGGAATT
GCTGGTGCAAATTGATGGGAATTGCTGGTGGTTTGGGAGCACTTGCAAAAATGCATGCTT
GTAATGTTTAGCTACTTGGAGCAAAGAAGAAAAATCTTGCTGGAATTTCTAGTGCCACAT
CTCAATTTCATGTTGTCTATCTTGAACAAGCCGAAGTATTTCAGAGCACCCCTCCAGCCC
TAAGGATCCGTGCTTGCAGGGCTATAGCTGCAAAGGCAACTCTAGCCGGAATAATTGATT
CAACTAGAGGTGATCCAATGGAAAAGCTGGTCACAACCTCTTAGAAGAAATTCGCAAGAA
GATCGAGAAGTGGCAAGTACTGCCTCCTGCAAAGCTTCCAAAACCACTTCATGTTCTAGA
TTCTGAACCTAAAAAGAAGAGAGGGGG