morexGenes - Barley RNA-seq Database

Contig contig_130289

Source Contig contig_130289

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_130289 (4582 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location

Predicted Genes from contig_130289

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_3370	4	1867 bp	MLOC_3370.1	Available	Available	None
MLOC_3371	14	3723 bp	MLOC_3371.1	Available	Available	LOC_Os05g01470.1, FRAME:-2, EVALUE:8e-23, 13105.m00080 protein methionine S-methyltransferase, putative, expressed

CDS Structure of MLOC_3370

CDS Structure of MLOC_3371

Contig Sequence (4582 bp)

>contig_130289 4582 assembly3_WGSMorex_rbca.fasta
CCGGGACTAATGGGCTGGCCAGGGCCGAACGATAGCCCTGTTTTCTAATAGTGATGGTAT
TCTAGCAACAACACCGAGTGCCAGTCCCTTCACACCATGATCTCTCCAGATAGAACCGAT
GGCATGGAACCACTTTTTTTTAGAAAAGGAGGATGACCCCCGGTCTCTGCATCTAGGAAA
TGCATGCGACCATTTTATTGATTATTCCTGATGACCTTACAAAGTAATACAACAATATGC
CTGAATCCGCTATCTTGGCAACATCTGCCGCTACTCCTATCTATATGATGAAGGGGTGCA
AGCTGGGCCAAATACCCACACCTCTTACCTAAGCCAACATCTAAAGCCAGACGTCCCGAA
CGAGCCACATACCGGGTCCGGGGCACAAACCGGTCCGACGCACTCACATGTGTCACCGCC
ACCATCTTCCACCGATTCATCTTCAGAGCAGATTGAGGTGTCAGCCTTGACAGGTGACTC
GTATCCTTCTCTACCACTTAATGCTCGTGATCATGATTTGATGGAGCCTTGGACATGCAT
TTGTTGTTTCATAACTTCACAAGGCACATAGATGAAAGATGCAAGTGTATCTCCTGGAAT
AAGCTTGAAAACACTTATGCGGTGCCAAGGAATCAACACATTATTCTGATGAAAAAAGCA
AATATTGGTACAACATTACATGAGTGAAAAAAGATACCACAAAAGTTTGAATGTACAAAT
ACCACATGCATTACGTGCCACTAAAAAATGACAATGAATAACTTACTGAGAACTCCATGT
TGTCGTCATGCACAAAAATCTTTTTGTACAACTAAATCCTAGTAACATGTTGAGAACCAG
TATATTTTTAACACCGCATGAGGCAGATTTTCTGGAAAGAAAATAAGTAGACATAAAAAT
ATTTTCTCACCATGTCCTCCAACAATAAAGTGATACCAATGACCTTTTAGATTAGTATCA
GTGTGTTTCACTCCAGCCATGTCTTAGTGAAATAAATGACAATAACAAGAAAGAACAAAA
TATGTTGCAGATGTAGAAAGTAAATGAGTAACTCCTGGACTGATTCCTTCGTTAAAACTT
GCAAATAGGTCAACAGTAGAAAACATCAAGAAATAGGTGGATTTTCGTTAAGAATCTTTG
ACATCAAGAAATGGGTTAAAATCTTTGACATCGCCTTTTGATTGTGGTTAAGAATCTAAT
TCAGATATCTAGAGCATTTTCATTAAGTTTTGGTCCACTATAATCCCCTTTCACAACAGA
TGCTAAAACCTGACTATACCTGTGGTATGCATCCAACAATGTGATCAAGTTCTATCTTGT
TATCTCTACAGTAAGAAAGAATATCAAATTCGTCGTAGATTGCATTGCGGTATGCATTCA
AGCAATGTTTTCCCCTCTGCATCGTAGATTGGGAGACCATCATCATCTAGTGCATTCAAA
TAAAGATTTATCCATGCAATCTTGATAGCTCTTGGGTTTATATCCATAGCATATATAGAC
CTTGAAAAGAACAACCAATGCTCAAGTAAGTTCATGCACTGATACATGACATTGATCCCT
GAGATCCTAGTTGTGCACATAGACACGCCTAATGTTTCAGTAAATATAATAATTAATGTA
TAATGCAACAACTGATTATTGCCCTGTTGCAAACATGCTAATCTATTAAGTTTGCTAAAT
AATAAATATAATTTCTTTAGCTCACTCAAATTTGCCATAGAGAAGCATTTTTCATGTCCA
TTAGAAATACAGAAAAACATTAATTTAGCTCAGTCTGTGCAGTTTGCTGCCGCAGTCCAA
TACATGGCCAAGTGGGTGGATTTCCTCAGTAATGTCATGTTCATTCAGTCATTGTGTATT
GATCTTACAAGTAACACATACCAGGTCGGTGCACTTTTAATAAGCATGGCATTCATGTAT
CAATAGTGTGGATGCTTTTCTTGTCCAAGTGTGTTTTAAATATGAGAGGAATCTTAAGAT
TTGTTTGTGTTGCTCGCTAGCCTCATTCTTTCCGCTACAAATTATGCGTGCATGGATAGA
AAGATGTTCCTACTGCTTGCTCTATTAGCATAAGCTGAGCTTGATTTCAAGGACATCGTA
TACTTTTGTGATGGGTAGCATTTCTCGATTAGATACACCTCTGAACTTACAATTAGAAGT
TTCTGAACCACTTTATTCTTGATAGGGAGGTTGTGAACCTTTTTGCCAAAATGATGTGGT
TGTTGTGTGCAGAACCAGTATGCAGAGAGAAAGATCTGTCAAGAAAAGAGGGTGCTAAAA
ATGAAAAATTCTGGATTTTCAAGGCTAGTGTCACGTGCTTATTATGCTCAAATGTTGTAT
TTAGCTTTACGCAAAGCAGCCATACTGAAGACACGAATGTCCGCATGTGCCTACTGACCA
TATCGGTAGCCAAAAAGTCGCGGTCGCGGTGCACTGGTAATCCTGCGTTTAGAGTTACGA
ACGTTGCAGACTGATGCAGACGCGCCATGGACGTGTGCCCTGCCCTTGCATCCCGACATG
ACAGGGACATTTCTATATATGGTTAGACATCAAATGAATAATGTACATAGAAGCATTTGT
GAAGAACTCACCAGCTGGTGGGGGAGGAGAGTAACAATAGGAAAGGAGGCATGGGGATCA
CTGAGAACATCCGTTGGGAGCTTGTGAGCAAACCGATGATGCGCCCTGCTGCGTGGGGGA
GAATATCATGTGACATAGATAGTGGCGGAGCTAGAAAGAAAACAATGGACGGGCCTAGTT
AAGGAGAGCACAAAATAATTTAAATTCTAAACCATTTATACTACTCCCAAGTTAAAACAG
TATATCAGTAGGCATAGCTACTATGGAGATGCATAATTCTGTTTACGTTAATGACAAAAT
CAGCAGATACATATATACCACTTTTATTATCAGGCATGGTCAGCATGGAGTTACATATAC
TACAAATTTCAGATGTGCTTTAACCAGTGAAGTGGAATTTCGGAAGGTAAATGAAGAAAA
GAATCGACCTTTTCATGTAGCCTGCTTGTGTCGCCCAGTGTCGACAGTAACAGTGGAAGC
AGTGAACGTCTATCGCTGGCTTACATCACCCTTCCTTAATTTTGCTTGCTGCTTGCTTGC
CGAGTCGTCCATGGCTGGCTCCCGCTACTAGCTGTCTGTGCGACAGTGCCCTAAGGCATG
GCCACACCGCCTATCACCAGATTTACATCTACAGGCTCTGACCAACTGCTGGACCTCCAT
GCCACCTCCGTCATGTCCTACTGGTTCGAGCAGACGAGCAGGTCATGAGGGGCTGGCCGT
GTTTGGTTGTGCTGGCCAGCTTGTGAACTGGGCAGTGAAGGACAAGAGGCAAGCACCACA
TCCACCCCGCAACAATCCCTGCTCTTCCAGTTACAACATTCATACTCTCTTTCTAATAGA
CCAAGTCAACACATGTTACGTGTATTCATAGAAAGCACTGAAGCCTAAAAAAATCGAGCA
AAGCATGCCTGGCAATGGCCTGCGCCTCCTCTCCCGGCACTGCCTTCCGCTGCCAGCTGG
GGCGACACTCTTATGCTGTCATTCGGAACGAAGTCATGGGATTGAGGCAGCCAATAGATC
TAGCATCACCGGGCCATCTGGCTTGTTCCTTCTTCGCCCCCCGCAATCAAGGTCGTTGGC
GTCGTGTCCGAGCTGCATCCAGCTCTGCCTCTGCCCTGCACGTCCCCATAACCAAATCTC
ATTAGCTTGAGAGCACCTGTCCGCGGAGATAGGTCATGAGCTTGGTGGGAGCAAGACGGT
GTAGGGTCGATGGTGGAGAGGCGGGAGAGGCAGTGGTACCCTCGCTAGCCGGAGAGCACA
TGGCTGGAGGAAGAGAGGAACATGAACGGCGGAGAGAGAGAACGAGCATGAGCGGCGGAG
AGAGAGAGCTCGAGCATGGGCATCGGAGAGAGGCAGGCGGCCGCCGTACTATCTCGCCTC
TGGTCTTCTCTGAGTGCCGCCCCTCTAAACCTCTACACCGGAGGACATGACTAAGAGGAG
ATGCAGGAGGGAAATCCTCGCCTCATCGGCGGCAGTTGCCCGGCCGCATGCCGTCTAAGA
TGTGGATGTGGTTGCAAGAAGCGGTTGAGATGCAGGAGGGAAATCCTCGCCTCATCGGCG
GCAGTTGCCCGGCCGCATGCCGTCTAAGATGTGGATGTGGCTGCAAGAAGCGGCTCTCAT
CGCCTCATCGGGGCCGTTCTCATCCGAGAGAGAGGGATTGACAGATCGTGACGGAGGGGG
AGAAGTGGGATCGTGATGGGAAGGGGGTCGCACGCGTTCGTGGGTTGAGCCGAATTGTTG
TTTTTCCGTTGTGAATCTTGTACGTGGGCTGAGTTAGCCTTCAATTTTTGTATGATGAGG
ACGTGGCCCATCGCATATGAGAGGTGGGATCGAACGAGGTGGCCCATCGCGGGCTGGTTG
TCGTACAAGAGGTGGGAGTTGAGCAGGGTTGAACCATCACTACACATTCTCCTTTAATAG
TATATATACTAGCAAAAGGACCCATGCGTTGCAACGGGAGAAAGAAATATCATACGTCAC
ACGCTTTTAATTTATAAAAAAT