Contig Data
morexGenes
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Map Locations of contig_129534 (2358 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_129534

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_3295 1 667 bp None Available Available LOC_Os10g30510.1, FRAME:-1, EVALUE:3e-28, 13110.m02627 protein retrotransposon protein, putative, unclassified
MLOC_3294 1 428 bp AK371466 Not available Available None





CDS Structure of MLOC_3295






CDS Structure of MLOC_3294






Contig Sequence (2358 bp)

>contig_129534 2358 assembly3_WGSMorex_rbca.fasta
CTTGCACAAATGGGCTGCATGGGCCTCTAGGATNNNNNAGGAATTTTCTGAAATTATATA
TTGGACTGGCCCATAAGTAGACAAAATTCCAGCAGATAACTTCACCAGTTGCATTAGCTA
GAGCCTTGTACTCAGCTTACTGCTTGATCTAGAAACAGTAGCCTTCTTGCGAGCGCTTCA
TAGGATCAGATTGCTATCAAGGAACACTTCAAATTCCCCTGATGATCTTCTATCATTAGG
ACATCCTGTCCAATCTTCATCTGAAAAAGCATCTACTAGCATAGAGTCCGACTTGCCAAG
CCAAAGTCCATGAATCTTAGTTCTCTGAAGATACCTCAGAATCCTTTTTATTGTTGTCCA
ATGTACACTTGTAGGGGCATGTAAGAACCGCCAAACTTTGTAACCCTGGGACCTCACTTT
GGCCAAGCTCGTGGGTTCGACCATGCCTTCCCTCCCGATGTGGTGCCCAATCAAACTAAT
GCATAAGAAAAGTATATCCCCAATTTTGTAACCCTAATGCTAGAAAATTATCTGATGTTT
GATGTGAAAGAAGGCGCTGGAGCTCAAACCGTCACTCCAAGTAACCATCCCGCCGACAAA
TCGCAATGGCAGGCGAGTCAACACTCGCCGGAAACAAGAGAGAGGGTCGACTGAGAGGAA
GAGCTCATCTGATGCGATCCAACCAAACCCGACTTTGCCTCCTGAGCACACTGCGTGTGC
CTCCCCCGCCATGTCATCTCCGTATGCGGGCCCCAACAAAGTGTGATGCGAGTTCGTTGA
TCTAGCTCCAATTATGGTTTTTCTTTGGCGCAATTAACTCCATGTGAAATCCTTCTCGCA
AAAAGAAAACTCCATGTAAAGCAAAACAGTGTCGCAAAATGCCAATAGCGGGCAATCTCA
TTGTTTGAAAAACAAAAACATATTTTAAATTTTAAAAATCATATATGGATGTATTCTACA
TGTGTGTAAATATTGTAGATAAAATCGTGATTTTCAAACCATTGAACAGTACAAATACTG
TTCGCTTTTAGAAATGCAGGATTTCATTGTCAGATTTTATATACATGTAGAATAGATCTA
TATGAATGTGTAGAATTATTTTGAATTTTCTTTTTTATAAAACTCTAACATGCAATTTCC
TGCAAAAAAAAACCCCAACATGCAATTACCAATTAACTATTTTTTGCAAAATAACTACTT
CCTTCGTTCTTAAATATAAGTCTTTTTAAAGGTTACATGTGAAAGGGAATCGTTTCTGGC
CGGTGCACCGGCCGAATCGTTCGGCCGGCCGCACGCGACCGCCTGCGCCCGCTGACTGGT
CATGCAACATTTTTTCGTTTAAATTATTGCAACCACCGTCATATTTGCTGTAAGCGTTAT
TTTTTTCCTACATTTTGTCCAGTAAAAAAGCTGCATATACGTTTGGTTGCAACTCCAGTT
CTTCGAATTTTTCGTTACAATCAATGTTTTTATTTTTGCTATAACCGTGTTAATTTTTGC
TACAACCGGCATCATTTTTTGCTGCAACCATTCACTAAAAAAGTTGCATACACATCACAC
GTAAATATTTGTTACAATCGGCGTTTCACTTTTGCTACCACATACCATCAGCTGTGTTTT
TTTCCTACGTATCACGTAGATATTTATTTTGCTACAAATTTTGTTTTTTGTTGTAACCGT
TGGAAAAATTGCTGCAATCGCATCGAAATTTTGCTGCATCAAAAAAAAAATATTACATGA
AGATCCAACGGTGCGGACGCGCGGGGTTGATGGATCGTGCGGCCTGCGCACGGCCGGCCC
AAAGTTTCGCGCGCCGGCCCAGATCACTCCCCCGTGTGAAATCTTTGTCGCAAAAAGAAA
AAAATCCGTTCACAGCGGAGTGAAAGTCAGGCTGGGGGTTGTTCTTCCTCCGCCGCGCAC
GGCCTGCACGCCGGCGATTGCTCATAACCCGCGTTACATCCGCCGCCTCCTCCTCGTCGC
CGCCGCCGCGGCCTTCATCTACATCCAAGTAAACCCCCTCCCTCCCTCCTTTGCTCTGCT
CTCTCCGGCTCTCCCCGTATCAGATCCATTCCGCTCAGCCAGTCGCCGGCCGGGGATCTG
ACCGCCTCCACCCTCATCTCCTCCACCCGAAAATCAGATTAGCCGAGTAGATTTCCCCTT
GATTCGGTTCCCCCTTTCTGTTCAGGTGCGGCTCTTCTCTACCCAGTCTCATGACGCCGG
ACGCCTCGCCCTCGCCGGAGCAGTACGCCCCCCTACCCATCTCCAGTATCTGATATATAC
AGGATCCAAACTCTTAACTTGTTCTGCTCTACAGGATCAACCTGATCTCCCCGTCGCCGC
TGTTGTCATAATGGCTTG