Map Locations of contig_129112 (5597 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_129112

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_3255 2 1969 bp AK369234 Available Available None
MLOC_3254 1 156 bp None Available Available None





CDS Structure of MLOC_3255






CDS Structure of MLOC_3254






Contig Sequence (5597 bp)

>contig_129112 5597 assembly3_WGSMorex_rbca.fasta
GTGGCGCCTAGGTGTCGGGCGCCACACAAAAAGGTCAGGGCGGTGAATTATTTCCCCCGC
GGGATCAATCCGTGAGTTCTTTCGTCCCAGGGGTCATTTTTGTCAGCTGCACTTCTTGAC
ACCTGGCCCATCGCTTCTCCAGAAGACCAGAATCTACAACTTTCTCCATTCCAAATTAAT
CTAACCATCTGAAGTCAAACTTCTCCATACATGATCAAAATATAAAAGAGCAATACGTTA
ATATCCACATCAAATCTAAGGGTACAGAAAATATATTATATTATTAATTTAATATAAACC
TAATTTATTGTTGTACTCCGTCCATCCCAAAATTCTTGTCTTAGTTTTGTCTAGAAATGA
GTGTATCTAAATACTAAAGAGATTTTTGGGACGGAGGGAGTATATGCTAATATTTTTTCC
TATATGCTTAAAACCATACAAAGCACTATAACAAAGCAGTCAGATACATCATACAAAGCA
TTAACTTATTTGTTCAAAAGCACAAGAACTGCGTCCAAATACAAACTGCGGAACACCCAA
ATTCGCTTACATCTCAGCACCAACTCACGAAACAATTAAAACGTTCAGCCTATTCTTTTT
CAGATATACAGCACGGACTCTTCTTACCCACTTCTGTTGTCTTGTTACAGAAATTGGTAG
AGAAGAACAAGCAAACCACTGACGCAGATCCAGCTCGGTCTTTCACTAAAAAACACGGAA
CGAGCACAATCCCCTGCAGACAGATCGCATCGAGTACAGAACTTTTTCTTCCTCGAGCGA
CCATGGTAGCTTAGCCAGCCACGACAAAACTGATGCAACAACTGCAAAATGTAAAAGGGT
GAGAGCATCCTTGAGCTAGCTAGGCATGGACACCATTCCCATTCGGATAGTATTTTCCAT
TCGCTAGACCATTGGCAAGCTTCTTCGCATGCCCATTTGAGTGTACATCAGCATTTTGGT
GTGCAGCCAGCGTGTATAGACCATTGCTAAATTGATGTTTGGCAGGAACCACATGGCCAT
TGGAGCAACCCTGCAGCACCTTGTCCAATTGCCCAGATGAGGCAGCAATTAGCCCTAAAA
TATAAACCAGGATTAACATATGGTTTTCCATTTCAAAGCATGATAAAGTAGGTGTTTCTG
AACAGTGGACAGGCAGCAAACAGCTTACCAACAAATAGTGGAGAAGGTTTCGCAGGTCTT
GACTTGAATTCAGGATGAAATTGTGCTCCAACGAAATACTGGTGACTGGGTATCTCGATT
ATCTAGAAAATTAGCAACTTGATCAAAGCGTGAATTTTTTTTTGAATGAAAGATTTTCAA
GCAAGCAAGTAATGGTTTTAGTCAAACCTCCATTCTCCTGCCACTCTCATCTTTGCCAAC
AAACTTGAGTCCAGCGTTTTCAAACTCTGGCACCATATCAGGATTCACCTGTGAAGAGGA
ACATGCTTCACTCATGTGAACAGGCATGAACTTAAATGCACTCATATGCTCATTGCAGCT
ATGAAAACACAATTATTAATGCCGGACCTCATATCTGTGCCGGTGCCTCTCATCGACATA
ATCCACGTTGCCATACCTAAAAAAGGTGAGAAAGCCCACAACTATGTAAGGAGAATGCTA
ATAAAATGAAACCTGGGCATAGGGAAATCATTATGGAGAAGGGACTATATTCACTCACAA
TTTAGCTGACTTGCAATCAGCAACCTTGAAGAATGTCCTCCTTGATCCTAGGCGCATTGT
GCCACCCATATGTGTTTTGGAACCCTAAAACAAAAATGAATAGAAATCTAACTCCAAGGT
ATGCATGGGACTGAAAAGAAGTTGCTTTGTTACCATTAATCTTTATGGCAACCAACGTGA
TCATTAATAACAAAAGTTGTGAATTTCAAAAATAATTACCTCAGGCATAAAAATAACACA
TGGGGTCTTGGCATTGGGGTCAAATTCAGTACTGTTCGCATGAGGGAGATTCATGACATG
CCTAGCAAACTCTACGACAGCCATCTGCATTCCAAGACATATACCAAGATATGGTACATT
GTTTTCACGGGCATACTTAGCAGCCAGAATTTTTCCTTGAACACCTCTGTCCCCAAAGCC
ACCAGGTACTAAAATGCCATCGGCACTCTGAAATGAAAGATCTTTATATAATCTAGATGA
TTTTTTTTAGTGTAGAACAGTTTCGGTGGTGAAAAATCCTCACCTTCAGTAAATTCCAAG
CTGCTTTGTAAGCATCAGGTGCCTAAGAAAAAAAAAACTTGTGTAAGAAAAGGAAATAGC
CCAGATCGAGCATACAGAACAATAGGAGACTACCAAACCTCAATTCTGGTAGAGTCCTCA
AGATCTGTAGAAGCAACCCAATCAACAACTAGCTTTCTGTGGCAATAAACCGAAGCATGC
AAGAGGGCCTACAATTGTGCAATTGCATCGGATTCAACTGTTAGACACTAGCAATCATTT
AGAAGGCATAAAGGGATAGTATAGCTGTGCAAATCTAACTCACCTTCAACACGGAGAGGT
AGGAATCAGATAGACCAGTGTACTTCCCAACCATAGCAATGTGTAGCTGAAATGAAACCA
TTAGTCACTTGGAACTATAAGAATAAAGAGACTTGAGGGTAACAATCAAAGTGGGAAAAA
CTAACAGTATCCTGAAGGGTGTCAAACATAGTAGCTCTTGCAACCCATTCGTCCAACTTT
GGCTCACGAGGAAAGCTGCAAATGTGTACACATAAATATTTATTGCACCGACACACTACA
GCCTGAACAAAAAACATACTGACTAGATATGTATAGGCAAACCTTTCAAGGTTCAGAACT
TTAAGAATAGCTTCATGCGCCTTTTGGTCCTGCGGGACAAAATAAGATTGAGCATTAAAC
GCAAATATTGAAGAACCAAAAATGAATTACTACACAGAAGATGAGATGTGCTATACCCGT
AGCAACAAAGGAATGCGCCAAATATTGGAAACATCATACAGAGTGAGAATGTTTGCTGCC
TACAGAACAAATTTGTTCATGAGCTACCAGGGGAAATTAGCTACTAAGAATATGAAGCAA
ACACTAACAACAACATTTACAGTTCAATTACCGGCACATGGCAAAACTGAGACAGTTTCT
CTTTCACATTTTCTTCCAGTTCCTGTCAAATACAAGTGCGAAAAATGAGATTGAGAATAC
AAACAAATATAAGTAACATACAACATCAAAGTAAATGAAGGGCTAACTAACTTTTGTACT
GCGACAAGCTAAAATATTTGGGGTGAGGCCAAGTCCCCTTAAACCACGCACACTGTGTTG
AGTCGGCTTGGTTTTCTATAAAAGTAAATGAAAAAAGAACAAATATTAGGCAGTGACATT
AAAATCAAAAAAAATTCACATATTAAGATGTACTGTACTATACATCATAAAACAAGAAAC
CAGAGAATTTGGATACCTGTTCACCAACAACATTCAGAACTGGAACAAGACTGACATGCA
CCAGACAGAAGTTACCAGGTCCTGGCAACCAAAACAATATCCAAAAGAAGATAAAGATCC
CCCTAACCCAGAAAAGACAGTACAGTTTTTTATGTATCAATATAAATGTGTAAGTTCCTC
ACCAACACGATACGAGAATTGACCCAAAGCTTCAATAAATGGCATAGATTCGATATCACC
TGTAGCAGTAGTGACAACATAATCAAGCTACAGACATCAGCTAATCAACATAAATAAACA
AATAAAATAATTAATTATCTCATGCCCACCAATTGTTCCGCCGAGTTCGATCACACAGAC
ATCAGCTGGTCCGTCCATGCCGTCCACCGGTATCATAGCAACACGCTCGATCCAGTCTTG
TATGGCATTTGTAATGTGTGGCACAACCTTGATGATTAATCGGTTTAATGATAAGCACTT
CAAGAAACATGCATACAGTAGTTACCAGGACAAACAAAAATAAAAATGGTGTGCATAGGT
GGTCCTCACCTGCACAGTCTTTCCCAAGTATTCCCCTTTCCTCTCCTTGTCAATAACAGA
CTGTCATGAACAAAAAAAAGCAAATAAGAAATGTCAGAACAGCTTGGCACACAGGGGGCA
ACAACTGTATTTAGAATGTCACATACTCCCTCCGTCCAGAAATACTTGTCATATGAATGG
ATGTATCTAGATGTATTTTTGTTCTAGATACATCCATTTTAATCTATTTGCATGACAAGT
AATTCCGGACAGAGGGAGTATTAGACATGCTGTCACGGGCTGGTGGGTTGGAACGGAGGT
TGTAGTCATGGAAGACAGGAGGCCGAGGCGCAGGAGCAAGGGGTGAGAGATTAGATTGTT
TTCTGCTTAACTTTATTGATCCCTAAAGCTGGCTATATAAAGCCTGATTACAAGACTAGA
CTCCTACTCTAATTGGGAGTTGGCAGGGTAACCTTCTACGGGACTAAACCTTTCCAACTA
GCCCAGACTCCTAATCTAACACAACTTCTGTAATTACAATATGCCATAGCTTAGGCTGGT
GCAGGCCCAGCCAGCGTGGGTCGTCGCCTATAGGGCTGACCCCACATGACATCTCCCCCT
CCATTCTGAAACAGCTCGTCCTCGAGCTGGAAACCTGGATAACGATCACGGAANGTAGGG
ACATCCTCCCATGATGCAGCAGACGCCGGCTGGCCCTCCCACTGAATGAGCACCTGTTGA
ACGCCGCGAGCAATACGAGCACGCAATGCCTTGATAGGAGTTGGATGCACTCGACCTTGA
AACAGCGGGGAAGCATCGGCTGAACTTCAGGTGGCTCGCCATGGTATTTCTTCAGGACCC
CGACATGGAACACATTGTGAATGCGGACGCTTGGGGGTAGCTCCAAACGGTAGGCAACCG
TATCAATCTTAGTGAGGACTTTGAAAGGCCCGTAGAATTTGGGAGCCAACTTCCCTTTAG
CGCCCACTCCAAGGAATGCAGCCGGCCGGTGCTGAAGACGTAGCCAAACCCACTCGCCAA
TATCAAAAGAAAGAGCCCGATGCTTATCATCATAGTAATGCTTGTACTATTGTGCTGCCT
GAAGGAGACGCTCACGGATGTCGAGTAGGTATTGATCACGGTTGAGGAGCTGTCGTTCGA
CTGCCTGATTGCGAATTTCGCCCGGCGTATAGTCCCGGAGCCGGAGCGAGGGGGGATCCC
GACCATAAACCACCCTGAAAGGAGTATCCTTCAATGCTGAATGGTACAAAGTGTTGTAGC
AGAACTCCGCCCAAGGTAACCATTGCAGCCACTACCTTGGACGATCCCCTCTGATGCAAC
ACAAGTACATAGTGATGACGCGATTCACGGCCTCCGATTGTCCATCGGACTGTGGATGAA
AGGCCGAACTCATGTGCAAGCGCGTCCCGGCGGCGGCAAACAGAGCCTTCCAAAAGCCCG
AAGTAAAAACCACATCCCGGTCTGAAACGATGGATGTTGGAAACCCATGAAGTCAGACAA
TTTTGGAAAAGAAGGTTGTAGCGACAGACTCAGCAGTGTACGGATGCGCCAAGGGTATGA
AATGTGCATACTTGGAGAAACGGTCCACGACGGTCAGGATCACACTCTTGCCGCCCACCT
TTGGAAGTGCCTCAATG